BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72970.1
Length=2149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926666 jgi|Araly1|926666|scaffold_202227.1 3044 0.0
> Ahg926666 jgi|Araly1|926666|scaffold_202227.1
Length=1835
Score = 3044 bits (1648), Expect = 0.0
Identities = 1777/1840 (97%), Gaps = 6/1840 (0%)
Strand=Plus/Plus
Query 77 GCTCTTCAGTTTTGGTTTCTGCAGtctccaatggctctcaagctctttctctttgctctt 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTCTTCAGTTTTGGTTTCTGCAGTCTCCAATGGCTCTCAAGCTCTTTCTCTTTGCTCTT 60
Query 137 cttctctgtctcccgacttctctctcctccactgcctctAAAGGTAAAGAGAAGAAGTCG 196
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 61 CTTCTCTGTCTCCCGACTTCTCTCTCATCCACGGCCTCTAAAGGTAAAGAGAAGAAGTCA 120
Query 197 AAGTTTAATCCATACAGATACACATTCATCGATAAAGCAAGCACATTCTCATCATCTTCC 256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 AAGTTTAATCCATACAGATACACATTCATCGATAAAGCAAGCACATTCTCATCATCATCC 180
Query 257 TCATCTTCATTTTCATCCAACGGTCAAGATTC-GTCCTACGACTACATAGTCATCGGAGG 315
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 181 TCATCTTCATTTTCATCCAACGGTCAAGATTCAG-CCTACGACTACATAGTCATCGGAGG 239
Query 316 TGGAACCGCAGGGTGTCCTCTCGCCGCAACGTTGTCGCAGAATTTCAGCGTTCTTGTTTT 375
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 240 TGGAACCGCAGGGTGTCCTCTCGCCGCAACGCTGTCGCAAAATTTCAGCGTTCTTGTTTT 299
Query 376 AGAGAGAGGTGGCGTTCCGTTTACAAACGCAAACGTTTCTTTCCTCAGGAATTTTCACAT 435
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGAAAGAGGTGGCGTTCCGTTTACAAACGCAAACGTTTCTTTCCTCAGGAATTTTCACAT 359
Query 436 CGGACTTGCTGACATTTCAGCTTCTTCCGCGTCTCAAGCGTTTGTTTCCACTGACGGCGT 495
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 CGGACTTGCTGACACGTCAGCTTCTTCCGCGTCACAAGCGTTTGTTTCCACTGACGGCGT 419
Query 496 TTACAACGCCCGTGCTAGAGTTCTCGGTGGCGGTTCCTGTATTAACGCCGGTTTTTACTC 555
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTACAACGCTCGTGCTCGAGTTCTCGGTGGCGGTTCCTGTATTAACGCCGGTTTTTACTC 479
Query 556 CAGAGCCGATGCTGCGTTCGTGAAGCGAGCAGGATGGGATCCGAAGCTGGTGAAGGAGTC 615
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 CAGAGCCGATGCTGCGTTCGTGAAGCGGGCAGGATGGGATCCGAAGCTGGTGAAGGAGTC 539
Query 616 GTATCCATGGGTGGAGAGAGAGATTGTTCATCAGCCAAAGTTAACGTTATGGCAGAAAGC 675
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTATCCATGGGTGGAGCGAGAAATTGTTCATCAGCCAAAGTTAACGTTATGGCAGAAAGC 599
Query 676 TCTCAGAGACAGTCTTTTAGAGGTTGGAGTCAGACCTTTCAATGGTTTCACTTACGATCA 735
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 TCTCAGAGACAGTCTTTTAGAGGTTGGAGTCAGACCTTTCAATGGCTTCACTTACGATCA 659
Query 736 CGTTTCCGGAACCAAAATCGGCGGTACAATTTTCGACAGATTCGGCCGTCGTCACACCGC 795
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 CGTCTCCGGAACCAAAATCGGCGGCACAATTTTCGACAGATTCGGCCGTCGTCACACCGC 719
Query 796 GGCGGAGCTTCTCGCTTACGCTAATCCTCAGAAGCTTAGAGTCTTGATCTACGCCACCGT 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 GGCGGAGCTTCTCGCTTACGCTAATCCTCAGAAGCTTAGAGTCTTGATCTACGCCACTGT 779
Query 856 GCAAAAAATCGTCTTTGACACTTCTGGAACAAGGCCTCGAGTAACAGGAGTAATATTCAA 915
|||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||
Sbjct 780 GCAAAAAATCGTCTTTGACACTTCGGGAACAAGGCCTAGAGTAACAGGAGTGATATTTAA 839
Query 916 AGATGAGAAAGGTAATCAACACCAGGCTTTACTCTCGAATAGAAAGGGAAGTGAAGTGAT 975
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGACGAGAACGGTAATCAACATCAGGCTTTACTCTCGAATAGAAAGGGAAGTGAAGTGAT 899
Query 976 CTTATCTAGTGGAGCTATTGGGTCACCACAGATGCTGATGTTAAGTGGGATTGGACCTAA 1035
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTTATCTAGTGGAGCCATTGGGTCACCACAGATGCTGATGTTAAGTGGGATTGGACCTAA 959
Query 1036 GAAGGAGCTTCAGAGGCTGAAGATTCCTGTGGTTTTAGAGAATGAGCATGTAGGAAAAGG 1095
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 GAAGGAGCTTCAGAGGCTGAAGATTCCTGTGGTTTTAGAGAATGAGCATGTAGGGAAAGG 1019
Query 1096 AATGGCTGATAATCCCATGAACACGATCTTGGTGCCTTCAAAGGCGCCTATAGAGCAGTC 1155
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 AATGGCTGATAATCCCATGAACACGATCTTGGTACCTTCAAAGGCGCCTATAGAGCAGTC 1079
Query 1156 ACTTATTCAGACTGTTGGAATTACAAAGATGGGTGTGTATGTTGAAGCCAGTACTGGCTT 1215
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ACTCATTCAGACTGTTGGAATTACAAAGATGGGTGTGTATGTTGAAGCCAGTACTGGCTT 1139
Query 1216 TGGGCAATCTCCTGAGAGTATTCATACTCACTATGGGATTATGTCGAACAAGAATGAATT 1275
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1140 TGGGCAATCTCCTGAGAGTATTCATACTCACTATGGGATTATGTCAAACAAGAATGAGTT 1199
Query 1276 GTTTTCCACCATTCCTGCAAAGCAGAGAAGACCAGAAGCAACGCAAGCTTACATCACAAG 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GTTTTCCACCATTCCTGCAAAGCAGAGAAGACCAGAAGCAACGCAAGCTTACATCACAAG 1259
Query 1336 AAACAAATACCAACTTCACGAAGCATTCAATGGAAGTTTCATCTTGGAGAAACTTGCTTA 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AAACAAATACCAACTTCACGAAGCATTCAATGGAAGTTTCATCTTGGAGAAACTTGCTTA 1319
Query 1396 CCCGATCTCTAGAGGGCATTTGAGCTTGGTCAACACAAATGTTGATGACAACCCTTCAGT 1455
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1320 CCCCATCTCTAGAGGGCATTTGAGCTTGGTCAACACCAATGTAGATGACAACCCTTCAGT 1379
Query 1456 CACCTTCAATTACTTTAAACACCCGGTGGATCTCCAACGCTGTGTTGAAGCCATTCGTCT 1515
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1380 CACCTTCAATTACTTCAAACACCCGGTAGATCTCCAACGCTGTGTTGAAGCCATTCGTCT 1439
Query 1516 TGTTTCCAAAGTGGTGACGTCTAACCGTTTCTTAAACTACACGCAGTGTGACAAGCAAAA 1575
||||||||||||||||| ||||| || |||||||||||||| ||||| || ||||||||
Sbjct 1440 GGTTTCCAAAGTGGTGACATCTAAGCGCTTCTTAAACTACACACAGTGCGATAAGCAAAA 1499
Query 1576 CGTACACAAGATGCTTAGCTTAAGCGTCAAGGCAAACATCAATCTAAGGCCAAAGCAACT 1635
||| |||||||||||||||||||| || |||||||||||||||||| |||||||||||||
Sbjct 1500 CGTCCACAAGATGCTTAGCTTAAGTGTTAAGGCAAACATCAATCTACGGCCAAAGCAACT 1559
Query 1636 GAACGATACCAAATCAATGGCTCAGTTCTGCAAAGACACTGTTGTCACAATCTGGCACTA 1695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GAACGATACCAAATCAATGGCTCAGTTCTGCAAAGACACTGTTGTCACAATCTGGCACTA 1619
Query 1696 CCATGGTGGATGTCTTGTGGGTAAAGTTGTGAGCCCTAACCGCAAAGTTCTTGGTGTCGA 1755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 CCATGGTGGATGTCTTGTGGGTAAAGTTGTGAGCCCTAACCGCAAAGTTCTTGGTGTCGA 1679
Query 1756 CAGGCTCAGAGTTATTGATGGTTCAACGTTTGACGAGTCTCCAGGAACCAACCCGCAAGC 1815
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1680 CAGGCTGAGAGTTATTGATGGTTCAACCTTTGACGAGTCTCCAGGAACCAACCCTCAAGC 1739
Query 1816 TACTATGATGATGATGGGAAGATACATGGGAGTCAAGATTCTTCGGGAGAGACTTGGAAA 1875
||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1740 TACGATGATGATGATGGGAAGATACATGGGAGTCAAGATTCTTAGGAAGAGACTTGGAGA 1799
Query 1876 CAAAGCTGGTGTTTAGTTTGCAGATTGAGCTTTTATGGTA 1915
||| ||||||||||||||||| | |||||||||| |||
Sbjct 1800 CAAGGCTGGTGTTTAGTTTGC---T-GAGCTTTTATCGTA 1835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80865590135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5