BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72980.1
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476427 jgi|Araly1|476427|fgenesh2_kg.2__1557__AT1G72980.1 852 0.0
> Ahg476427 jgi|Araly1|476427|fgenesh2_kg.2__1557__AT1G72980.1
Length=615
Score = 852 bits (461), Expect = 0.0
Identities = 569/620 (92%), Gaps = 12/620 (2%)
Strand=Plus/Plus
Query 3 ATGTCCTTAAGCACTTTCTCCGGTGGTTCCACCACAGCTTGCGCTGCCTGCAAACACCAA 62
|||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGTCCTTAAGCACCTTATCCGGTGGTTCCACCACAGCTTGCGCTGCCTGCAAATACCAA 60
Query 63 AGAAAAAAGTGTAAGAAAAACTGTATTCTCGCTCGTTATTTCCCACAAGATGGCACAAAT 122
||||||||||| |||||||||||| ||||||||| |||||||||||||||| || |||||
Sbjct 61 AGAAAAAAGTGCAAGAAAAACTGTCTTCTCGCTCCTTATTTCCCACAAGATCGCTCAAAT 120
Query 123 AAGTTTCTAAACGCTCATAAACTGTTTGGAGTAAGCAACATCACCAAGATGCTC-AAGAG 181
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
Sbjct 121 CAGTTTCTAAACGCTCATAAACTCTTTGGAGTAAGCAACATCACCAAGATGCTCAAAG-G 179
Query 182 AATCGAAGAATCTCAACGAGACATCGCTATGGAGAATCTTATCTACCACGCTAATGCTCG 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AATCGAAGAATCTCAACGAGACATCGCTATGGAGAATCTTATCTACCACGCTAATGCTCG 239
Query 242 TGCCCTAGATCCAGTAGGAGGGGTTTACAGGACAATCTGTGATCTTAAGTGCAAGATCGA 301
|||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 240 TGCCCTAGATCCAGTAGGAGGGGTTTACAGTACTATCTGTGATCTTAAGCGCAAGATCGA 299
Query 302 GTTTGTTCAGACTGAGCTTAACTTAACTCGTCAGCAAATCGATATGTGTCGCTCTCTAGC 361
| | |||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 300 GATCGTTCAGGCTGAGCTTAACTTTACTCGTCAGCAAATCGCTATGTGTCGCTCTCTAGC 359
Query 362 TCAGGAGCAGCATAGGCAAAGGCAAAATCTTCCATATCGCTGCAATTCCT-TCGAA-AGT 419
|||| ||||||| |||||||||||| ||||||||||| ||||| |||||| | ||| | |
Sbjct 360 TCAGCAGCAGCAGAGGCAAAGGCAAGATCTTCCATATGGCTGCTATTCCTAT-GAACA-T 417
Query 420 CTATTACAACAAGACGGAGATGAATACGTTAATGTGGATGGTTTAGATCATCAGAACATG 479
|||||||||||||| | |||||||||||||||||| |||||||| |||| ||||||||||
Sbjct 418 CTATTACAACAAGATGAAGATGAATACGTTAATGTCGATGGTTTTGATCTTCAGAACATG 477
Query 480 CAACAACAACAAGAGATGCAGCAGCAGCAACA---GAATCCG-TCAAACTACGATATGTT 535
|||||||| || ||||||||||||||||| || |||||| | ||||||||| |||||
Sbjct 478 CAACAACATCAGGAGATGCAGCAGCAGCAGCAACCGAATCCAAT-AAACTACGAGATGTT 536
Query 536 TTTGGAGATGCCTGAACAAACCAGCAAAGTAAAGCTTGAGGAGGAAAAAATCTCTGACCA 595
||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 537 TTTGGAGATGCCTGAACAAACTAGCAAGGTAAAGCTTGAGGAGGTAAAAATCTCTGACCA 596
Query 596 GAGAAAAAACAATCTCATGA 615
| || ||| ||||||| |||
Sbjct 597 GGGAGAAA-CAATCTCGTGA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30727071102
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5