BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G72990.1
Length=2529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908910 jgi|Araly1|908910|Al_scaffold_0002_1991 2857 0.0
> Ahg908910 jgi|Araly1|908910|Al_scaffold_0002_1991
Length=2061
Score = 2857 bits (1547), Expect = 0.0
Identities = 1919/2089 (92%), Gaps = 63/2089 (3%)
Strand=Plus/Plus
Query 234 AGCTGGCCATCAACGGGAAGACAAAGAAGACATCAATTGGCTTCCATGTTGCTCCTGGTT 293
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 22 AGCTGGCCATCAACGGGAAGACAAACAAGACATCAATTGGCTTTTGTGTTGCTCCTGGTT 81
Query 294 CTTGTAGTTGTCGGAATCTATGTTCCTGTCTTCGCTCTTCTCCCTTCACTGTCATATACT 353
||||||| |||||||||| |||| || ||||| |||| | | |||||| | | | ||
Sbjct 82 CTTGTAGCTGTCGGAATCCATGTGCCCGTCTTAGCTC-T-T-CCTTCA---T--TGT-CT 132
Query 354 CCTCAGTCTCTACCTTCTGCTATACCTCAGGACGAGAAGATG---AT-ATCTC--GCAAG 407
|| | | || | ||| |||||| ||||||||||||| || || || | |||
Sbjct 133 -CT--G-C-CT--C--CTGAAATACCTGGGGACGAGAAGATGATAATGATATCAAGGAAG 183
Query 408 TTTTATATCAAGGATGACAATTTCTGGAAAGATGGGAATCGTTTTCAGATCATTGGTGGT 467
||||||||||| ||||||| |||||||||||||||||||| |||||||||||| ||||||
Sbjct 184 TTTTATATCAAAGATGACAGTTTCTGGAAAGATGGGAATCATTTTCAGATCATCGGTGGT 243
Query 468 GATTTGCATTACTTTCGTGTTCTTCCAGAGTACTGGGAGGATCGGCTTTTAAGAGCCAAT 527
|||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 244 GATTTGCACTACTTCCGTGTTCTTCCTGAGTACTGGGAGGATCGGCTTCTAAGAGCCAAG 303
Query 528 GCTTTAGGCTTGAATACTATTCAAGTATACGTTCCTTGGAATCTGCATGAACCAAAGCCT 587
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GCTTTAGGCCTGAATACTATTCAAGTATACGTTCCTTGGAATCTGCATGAACCAAAGCCT 363
Query 588 GGGAAGATGGTTTTTGAGGGTATTGGTGATCTTGTCTCCTTTCTCAAGCTGTGTGAGAAA 647
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 364 GGGAAGATGGTTTTTGAGGGTATTGGTGATCTTGTGTCCTTTCTCAAGCTATGTGATAAA 423
Query 648 CTAGATTTTCTGGTTATGCTACGTGCTGGACCTTATATCTGTGGAGAATGGGATTTGGGA 707
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 424 CTAGATTTTCTGGTTATGCTGCGTGCTGGACCTTACATCTGTGGAGAATGGGATTTGGGG 483
Query 708 GGCTTTCCTGCTTGGTTACTTGCTGTGAAACCACGTCTCCAACTAAGGACATCAGATCCT 767
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 484 GGCTTTCCTGCTTGGGTACTTTCTGTGAAACCACGTCTCCAACTAAGGACATCAGATCCT 543
Query 768 GTATATCTTAAGTTGGTTGAAAGATGGTGGGATGTTCTGTTACCGAAGGTATTTCCTCTG 827
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GCATATCTTAAGTTGGTTGAAAGATGGTGGGATGTTCTGTTACCGAAGGTATTTCCTCTA 603
Query 828 CTTTACAGCAACGGGGGTCCTGTTATAATGGTTCAGATTGAAAATGAATATGGTTCATAT 887
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 ATTTACAGCAATGGGGGTCCTGTTATAATGGTTCAGATTGAAAATGAATATGGTTCATAT 663
Query 888 GGAAATGACAAAGCTTATCTTCGTAAGCTAGTTAGTATGGCTAGGGGACACCTGGGGGAT 947
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 GGAAATGACAAAGCCTATCTTCGTAAGCTAGTTAGTATGGCTAGGGGACACCTGGGGGAT 723
Query 948 GACATTATTGTGTACACAACAGATGGAGGGACAAAAGAAACTCTTGATAAAGGAACTGTC 1007
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 724 GACATTATTGTGTACACAACAGATGGAGGGACAAAAGAAACTCTTGAGAAAGGAACTGTC 783
Query 1008 CCTGTAGCTGATGTCTACTCAGCTGTTGATTTCTCTACCGGTGATGATCCTTGGCCAATA 1067
||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 784 CCTGTAGATGATGTCTACTCAGCTGTTGATTTCACAACCGGTGATGATCCTTGGCCAATA 843
Query 1068 TTTAAATTGCAAAAGAAGTTTAATGCTCCAGGAAGATCACCTCCACTTTCCTCGGAGTTC 1127
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TTTGAATTGCAAAAGAAGTTTAATGCTCCAGGAAGATCACCTCCACTTTCCTCGGAGTTT 903
Query 1128 TACACTGGTTGGCTCACGCATTGGGGTGAGAAA-ATTA-CAAAAACAGATGCCGAATTTA 1185
|| ||||||||||| || ||||||||||| ||| || | ||||||| ||||| |||||||
Sbjct 904 TATACTGGTTGGCTAACACATTGGGGTGA-AAAGAT-AGCAAAAACCGATGCTGAATTTA 961
Query 1186 CGGCAGCTTCTCTTGAAAAAATTCTGTCTCGAAATGGTTCTGCTGTGCTCTATATGGTGC 1245
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 962 CGGCAACTTCTCTTGAAAAAATACTGTCTCGAAATGGTTCTGCTGTGCTCTATATGGTGC 1021
Query 1246 ATGGAGGAACAAACTTTGGTTTCTACAATGGCGCAAATACTGGCTCTGAAGAATCTGACT 1305
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1022 ATGGAGGAACAAACTTTGGTTTCTACAATGGTGCAAATACTGGCTCTGAAGAATCTGACT 1081
Query 1306 ATAAACCAGATCTGACATCTTATGACTATGATGCTCCCATTAAGGAGTCTGGTGACATAG 1365
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1082 ATAAACCAGATCTGACATCCTATGACTATGATGCTCCCATTAAGGAATCTGGTGACATAG 1141
Query 1366 ATAATCCAAAATTCCAAGCTCTTCAGAGAGTGATTAAGAAGTACAATGCTT-CACCACAC 1424
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1142 ATAATCCAAAATTCCAAGCTCTTCAGAGAGTGATTAAGAAGTACAATG-TTGCATCACAC 1200
Query 1425 CCCATTAGCCCATCCAATAAGCAACGGAAAGCTTATGGCTCT-ATCAAGATGCAGATGAC 1483
|||||| ||| |||||||||||||||||||| ||||| ||| |||||||||||||||||
Sbjct 1201 TCCATTATCCCCTCCAATAAGCAACGGAAAGCGTATGG-TCTTATCAAGATGCAGATGAC 1259
Query 1484 AACATCACTGTTTGATTTAGTTCGTATGACAGATCCTGCAGATGTGATCACCTCCGCCAA 1543
||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1260 AACTTCACTGATTGATTTAGTTAGTATGACAGATCCTGCAGATGTGATCATCTCCGCCAA 1319
Query 1544 CCCAATTTCAATGGAATCTGTTGGACAGATGTTCGGATTTCTTTTATATGAATCTTCATA 1603
|||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||
Sbjct 1320 CCCAATTTCAATGGAATCTGCTGGACAGATGTTCGGATTTGTTTTATATGAGTCTTCATA 1379
Query 1604 CATCGCAAAAAAGAGTGGGAATACACTAAGAATACCCAAGGTTCATGACAGAGCTCAAGT 1663
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1380 CATCGCAAAGAAGAGTGGGAATATACTAAGAATACCCAAGGTTCATGACAGAGCTCAAGT 1439
Query 1664 GTTTGTTTCATGTCTTTCCCAAGATGTTGATGTGGGAGTACTGAGATACATTGGTACTAC 1723
||||||||||||||||||||||||||| | | | ||||||||||||||||||||| ||
Sbjct 1440 GTTTGTTTCATGTCTTTCCCAAGATGT-G--G-G--AGTACTGAGATACATTGGTACAAC 1493
Query 1724 TGAGAGATGGAACAACCAACCTATTTCTCTTCCAACTATTGAGTGTACCACAAACACTAG 1783
||| |||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 1494 TGAAAGATGGAACAACCAACCTGTTTCTGTTCCAACTATTGAGTGCACCACAAACACTAG 1553
Query 1784 CTTATTTATTCTGGTTGAAAACATGGGTCGTGTAAATTATGGGCCATATATCTTTGATGA 1843
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1554 CTTATTTATTCTGGTTGAAAACATGGGTCGTGTAAACTATGGGCCATATATCTTTGATGA 1613
Query 1844 CAAGGGTATTTTGTCTTCGGTTTATCTAGATGGTCAAATTCTCCATGGATGGAAGATGAT 1903
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1614 GAAGGGTATACTGTCTTCGGTATATCTAGATGGTCAAATTCTCCATGGATGGAAGATGAT 1673
Query 1904 ACCAATTCCTTTTCACAATCTAAATCAAGAGCCAAATCTCACTTTCGAGATGCAACATAC 1963
||||||||| |||||||| |||||||||| ||||||| ||| ||||||||||||||||||
Sbjct 1674 ACCAATTCCGTTTCACAACCTAAATCAAGTGCCAAATATCAGTTTCGAGATGCAACATAC 1733
Query 1964 CAAAAACAGAAGTAAAAAGTTCGAGCTTACTAATGATGTTGGTCGAAAGGAACCCGCTCT 2023
||||| || | ||| || || | | | || | ||||||||| |||||
Sbjct 1734 TAAAAA--GA-G-AAAT-GT-CG---T--C----G--GT----CAAAAGGAACCAGCTCT 1772
Query 2024 GTTTGCTGGTGAATTCTCTATCAACAGTGA-AGAAGAAATCAAAGACACATATCT-ATCA 2081
|||||||||||||||||||||||||| | | |||||||||| ||||||| || || ||||
Sbjct 1773 GTTTGCTGGTGAATTCTCTATCAACACT-ACAGAAGAAATCGAAGACACGTA-CTTATCA 1830
Query 2082 TTCAACGGTTGGGGTAAAGGAGTTGCTTTTGTCAATGAATTCAACATTGGAAGATATTGG 2141
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1831 TTCAACGGTTGGGGTAAAGGAGTTGCTTTTGTCAATGAATTCAACATCGGAAGATATTGG 1890
Query 2142 CCGTCTGTTGGACCACAGTGCAACCTCTATGTTCCTGCGCCACTTCTTAAGCGTGGCAAA 2201
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1891 CCGTCTGTTGGACCACAGTGCAACCTCTATGTTCCTGCGCCGCTTCTTAAGCCTGGCAAA 1950
Query 2202 AACACTTTGGTGGTATTCGAGTTGGAATCTCCGCATCTCGAGCTTTCGCTGGAGGCAGTG 2261
|| ||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1951 AATACTTTGGTGATTTTCGAGTTGGAATCTCCGCATCTCGAGCTTTTACTGGAGGCAGTG 2010
Query 2262 GATCACCAAGACTTCACATGCGGTTCAAATGTTTCCAAAGTTAATCAGT 2310
||||| |||||||| ||||||||| ||| ||||||||||| |||||
Sbjct 2011 GATCAAGAAGACTTCGTATGCGGTTCTTATGATTCCAAAGTTAGTCAGT 2059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95339883235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5