BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G73000.1

Length=883
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926669 jgi|Araly1|926669|scaffold_202230.1                       1013    0.0  


> Ahg926669 jgi|Araly1|926669|scaffold_202230.1
Length=674

 Score = 1013 bits (548),  Expect = 0.0
 Identities = 634/674 (94%), Gaps = 12/674 (2%)
 Strand=Plus/Plus

Query  81   AAAGTACACCCAAAACCATG------AATCTTGCTccaatccatgatccatcatcatcat  134
            |||||||||||||||| |||      ||||||||||||||| || || ||||||||||||
Sbjct  5    AAAGTACACCCAAAACTATGAACCTTAATCTTGCTCCAATCAATAATTCATCATCATCAT  64

Query  135  caacaacaacaacatcatcgtcaacaccatACGGATTAACAAAGGACGAGTTCTCAACAC  194
            || ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  65   CATCAACAACAACATCATCGTCAACACCATACGGATTAACGAAGGAAGAGTTCTCAACAC  124

Query  195  TAGACTCCATCATCCGAACACACCACACGTTCCCAAGATCGCCAAACACGTGCACATCAC  254
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  125  TAGACTCCATCATCCGAACACACCACACGTTCCCAAGATCGCCAAACACGTGCACATCTC  184

Query  255  TCATAGCACACCGTGTAGACGCACCGGCACATGCCATATGGAGATTCGTCCGCGACTTCG  314
            ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  185  TCATAGCACACCGCGTAGACGCACCGGCACATGCCATATGGAGATTCGTCCGAGACTTCG  244

Query  315  CCAATCCAAACAAATACAAACACTTCATCAAGAGTTGCACCATCAGAGTTAACGGTAACG  374
            | ||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct  245  CGAATCCGAACAAATACAAACACTTCATCAAGAGTTGCACCATCAGAGGTGACGGTAACG  304

Query  375  GCATCAAAGAGATTAAAGTTGGGACTATAAGGGAAGTTAGCGTGGTCTCTGGTCTTCCAG  434
            || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  305  GCGTCAAAGAGATTAAAGTTGGGACAATAAGGGAAGTTAGCGTGGTCTCTGGTCTTCCAG  364

Query  435  CGTCAACAAGCGTTGAGATACTCGAAGTTCTTGACGAAGAGAAACGAATCTTGAGTTTTC  494
            ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct  365  CGTCAACAAGCGTTGAGATACTCGAAGCTCTTGACGAAGAGAAACGGATCTTGAGTTTTC  424

Query  495  GTGTTCTTGGAGGAGAACACCGGTTAAATAATTACCGGTCGGTTACATCGGTCAACGAGT  554
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  425  GTGTTCTTGGAGGAGAACACCGGTTAAATAATTACCGGTCGGTTACATCGGTTAACGAGT  484

Query  555  TCGTCGTCTTGGAAAAGGATAAGAAGAAGAGAGTGTATAGTGTGGTATTGGAGTCTTACA  614
            |||||||||||||||||||||||||||| ||  ||||||||||||| |||||||||||  
Sbjct  485  TCGTCGTCTTGGAAAAGGATAAGAAGAA-AG--TGTATAGTGTGGTTTTGGAGTCTTATG  541

Query  615  TTGTTGATATACC-ACAAGGTAACACGGAAGAAGATACAAGGATGTTTGTGGATACGGTC  673
            ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |||
Sbjct  542  TTGTTGATATACCTA-AAGGTAACACGGAAGAAGATACGAGGATGTTTGTGGATACTGTC  600

Query  674  GTTAAGTCGAATCTACAGAATCTCGCCGTCATTTCCACGGCTTCTCCGACCTGAAAGTGT  733
            ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
Sbjct  601  GTTAAATCGAATCTACAGAATCTCGCCGTCGTTTCCACGGCTTCTCCGACTTGAAAGTTT  660

Query  734  TT-GTGTTGAAAAT  746
            || |||||||||||
Sbjct  661  TTTGTGTTGAAAAT  674



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32709462786


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5