BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73010.1
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476431 jgi|Araly1|476431|fgenesh2_kg.2__1561__AT1G73010.1 1583 0.0
Ahg920694 jgi|Araly1|920694|scaffold_101975.1 592 3e-168
> Ahg476431 jgi|Araly1|476431|fgenesh2_kg.2__1561__AT1G73010.1
Length=1102
Score = 1583 bits (857), Expect = 0.0
Identities = 1045/1130 (92%), Gaps = 36/1130 (3%)
Strand=Plus/Plus
Query 2 ATTCACAAACCAACAAGAACTCA-A-AGAGAGATCCATCAATTAGAATCACTAATTTCTT 59
||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 1 ATTCACAAACCAACAAGAACTCAGAGAGAGAGATCCATCAATTGGAATCACTAATTTCTC 60
Query 60 TAG-AAATTTCCTGAGTCATGGCTTACAATAGCAATAGCAATAACAACAACAACAACATT 118
||| |||||| ||||||||||||||||||||||||| || || |||| ||||||||||
Sbjct 61 TAGAAAATTT-CTGAGTCATGGCTTACAATAGCAAT---AACAAGAACAGCAACAACATT 116
Query 119 GTCGTTGTTTTCGACTTCGACAAGACCATCATCGACGTTGATAGCGATAATTGGGTAATC 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GTCGTTGTTTTCGACTTCGACAAGACCATCATCGACGTTGATAGCGATAATTGGGTAATC 176
Query 179 GATGAACTTGGCTTCACTGATTTGTTCAATCAACTTCTCCCCACCATGCCTTGGAACACA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GATGAACTTGGCTTCACTGATTTGTTCAATCAACTTCTCCCCACCATGCCTTGGAACACA 236
Query 239 CTCATGGACCGTATGATGAAGGAGCTTCATGATCAAGGCAAAACCATTGAGGAGATCAAA 298
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTCATGGATCGTATGATGAAGGAGCTTCATGATCAAGGCAAAACCATTGAGGAGATCAAA 296
Query 299 CAAGTCTTGAGAACAATCCCAATTCATCCACGTGTCGTCCCTGCCATCAAATCTGCACAT 358
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 297 CAAGTCTTGAGAACAATCCCAATCCATCCACGTGTCGTCCCTGCCATCAAATCTGCTCAT 356
Query 359 GATTTAGGGTGTGAGCTTAGGATAGTGAGCGATGCAAACATGTTTTTCATCGAGACCATC 418
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 357 GATTTAGGGTGTGAACTGAGGATAGTGAGTGATGCAAACATGTTTTTCATCGAGACCATC 416
Query 419 GTTGAACATCTCGGAATTAGCGAACTCTTCTCTGAGATCAACTCGAACCCAGGATATGTC 478
|||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 417 GTTGAACATCTCGGGATTAGTGAATTATTCTCTGAGATCAACTCGAACCCAGGATATGTC 476
Query 479 GATGAACGTGGCACATTGAAAATCTCTCCCTACCACGACTTCACTAAATCCCCTCATAGC 538
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct 477 GATGAACGTGGCACATTGAGAATCTCTCCCTACCACGACTTCACTAAATCGTCTCATGGC 536
Query 539 TGCTCTTGTGGCACTTGCCCTCCTAACATGTGCAAGGGTTTGATCATTGAGAGGATTCAA 598
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 537 TGCTCTTGTGGCACTTGCCCTCCTAACATGTGCAAGGGCTTGATCATTGAGAGAATTCAA 596
Query 599 CAATCTTTAGCTAAAGAAGGGAAGAAGAAAATGATCTATCTAGGAGATGGAGCTGGCGAT 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 597 CAATCTTTAGCTAAAGAAGGGAAGAAGAAAATGATCTATCTAGGAGATGGAGCTGGTGAT 656
Query 659 TACTGTCCAAGTTTGAAACTAAACACTGAAGATTACGTGATGCCACGTAAGAATTTCCCT 718
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TACTGTCCGAGTTTGAAACTAAACACTGAAGATTACGTGATGCCACGTAAGAATTTCCCG 716
Query 719 GTATGGGATCTAATTAGTCAAAATCCAATGCTGATTAAAGCAGCGATTAGAGAATGGACC 778
||||||||||| |||||| ||||||| |||||||||||||||| |||||||||||||||
Sbjct 717 GTATGGGATCTGATTAGTAAAAATCCGATGCTGATTAAAGCAGGGATTAGAGAATGGACT 776
Query 779 GATGGCCAAAGCATGGAGATGATATTGATAGGAACGATCGAGGAGATTAGATTGGAGGAA 838
||||| |||||| ||||||||||||| |||||||| ||||| ||||||| ||||||||||
Sbjct 777 GATGGTCAAAGCTTGGAGATGATATTAATAGGAACAATCGAAGAGATTATATTGGAGGAA 836
Query 839 GAGAAGGAGAAGATGTTGACTAGTGCGGAGAATAATTGCAAGATGCAGACCATCTCTATC 898
|||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| ||
Sbjct 837 GAGAAGGAGAAGATGTTGACTAGTGCGGAGAACAATTGCAAGTTGCAGACTATCTCTGTC 896
Query 899 GGGATTAATAATGTTCATCATGAACCAATATTGCCTCGTGCTCTTCGTGTGTCTCAGTCT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GGGATTAATAATGTTCATCATGAACCAATATTGCCTCGTGCTCTTCGTGTGTCTCAGTCT 956
Query 959 AGTTAGACGTTTTTGAAATAGTGGAGGAAGAAGATTTACAACTGTGGTGTTTCTTCTTCC 1018
||||||| ||||||||||||||||||||||||||||| | | | |||| |
Sbjct 957 AGTTAGATGTTTTTGAAATAGTGGAGGAAGAAGATTT-C---T-T-------CTTC--C- 1001
Query 1019 TCATATATGCATAATTTGTAGTACGTACGATTCCAAAAAGATTG-AATTTATCCTA-A-A 1075
| ||||||| | |||||||||| | | ||||| |||||| ||||||||||| | |
Sbjct 1002 T--TATATGCTTGATTTGTAGTA--T----T-CCAAAGAGATTGGAATTTATCCTATATA 1052
Query 1076 TTAA-T-ATTGTATGACGATGAAATTGCAAGAAGATTGCGATCTTTGTTT 1123
|| | | ||| ||||||||||||||||||||||||| ||| |||||||
Sbjct 1053 TTGTGTGAGTGTTTGACGATGAAATTGCAAGAAGATTGTGATTTTTGTTT 1102
> Ahg920694 jgi|Araly1|920694|scaffold_101975.1
Length=901
Score = 592 bits (320), Expect = 3e-168
Identities = 590/717 (82%), Gaps = 32/717 (4%)
Strand=Plus/Plus
Query 110 AACAACATTGTCG-TTGT-TTTCGACTTCGACAAGACCATCATCGACGTTGATAGCGATA 167
|||||||| || | | || ||| || || |||||||| |||||||| || || || ||||
Sbjct 39 AACAACATCGT-GATCGTCTTT-GATTTTGACAAGACAATCATCGATGTAGACAGTGATA 96
Query 168 ATTGGGTAATCGATGAACTTGGCTTCACTGATTTGTTCAATCAACTTCTCCCCACCATGC 227
||||||| ||||||||||||| |||||||| |||||||| || |||||||| || ||||
Sbjct 97 ATTGGGTTGTCGATGAACTTGGTTTCACTGAATTGTTCAACCAGCTTCTCCCAACAATGC 156
Query 228 CTTGGAACACACTCATGGACCGTATGATGAAGGAGCTTCATGATCAAGGCAAAACCATTG 287
|||||||| | |||||| | || ||||||||||||||||||||||| || ||||||||||
Sbjct 157 CTTGGAACTCTCTCATGAATCGGATGATGAAGGAGCTTCATGATCATGGTAAAACCATTG 216
Query 288 AGGAGATCAAACAAGT-CTTGAGAACAATCCCAATTCATCCACGTGTCGTCCCTGCCATC 346
| || ||||||||||| ||| || | |||||||||||||||||||||| |||||||||||
Sbjct 217 AAGAAATCAAACAAGTCCTT-AGGAGAATCCCAATTCATCCACGTGTCATCCCTGCCATC 275
Query 347 AAATCTGCACATGATTTAGGGTGTGAGCTTAGGATAGTGAGCGATGCAAACATGTTTTTC 406
|||||||| |||| ||||||||||||||| |||||||||||||| ||||||| ||| |||
Sbjct 276 AAATCTGCTCATGCTTTAGGGTGTGAGCTGAGGATAGTGAGCGACGCAAACACGTTATTC 335
Query 407 ATCGAGACCATCGTTGAACATCTCGGAATTAGCGAACTCTTCTCTGAGATCAACTCGAAC 466
||||| || ||| |||||||||| || ||||| || | ||||| ||||| ||| | ||
Sbjct 336 ATCGAAACGATCATTGAACATCTTGGGATTAGAGAGTTTTTCTCCGAGATTAACACAAAT 395
Query 467 CCAGGA-TATGTCGATGAACGTGGCACATTGAA-AATCTCTCCCTACCACGACTTCACTA 524
|||||| | ||| ||||||| || | ||| || | ||||||| ||||| |||||||| |
Sbjct 396 CCAGGACT-TGTAGATGAACAAGGAAGATT-AATAGTCTCTCCTTACCATGACTTCACCA 453
Query 525 AATCCCCTCATAGCTGCTCTTGTGGCACTTGCCCTCCTAACATGTGCAAGGGTTTGATCA 584
|||| ||||| | ||||| | | |||||||||||||||||||||||||||||| |
Sbjct 454 AATCTTCTCATGGTTGCTC---T--C-GTTGCCCTCCTAACATGTGCAAGGGTTTGATAA 507
Query 585 TTGAGAGGATTCAA-CAATCTTT-AGCTAAAGAAGGGAAGAAGA--AA-ATGATCTATCT 639
| || ||||||||| | ||| | | | |||||||||| ||||| || ||||| |||||
Sbjct 508 TCGAAAGGATTCAAGCT-TCTCTGACC-AAAGAAGGGAGGAAGACCAATATGATATATCT 565
Query 640 AGGAGATGGAGCTGGCGATTACTGTCCAAGT-TTGAAACT-AAACACTGAAGATTACGTG 697
|||||||| ||||| ||||||||||||||| ||| | || ||| ||||||||||| ||
Sbjct 566 TGGAGATGGTGCTGGTGATTACTGTCCAAGTCTTGGA-CTCAAAG-CTGAAGATTACATG 623
Query 698 ATGCCACGTAAGAATTTCCCTGTATGGGATCTAATTAGTCAAAATCCAATGCTGATTAAA 757
|||||| | ||||||||||| || |||||| | |||||||||||||| ||| || ||||
Sbjct 624 ATGCCAAGGAAGAATTTCCCGGTTTGGGATTTGATTAGTCAAAATCCCATGTTGGTTAAG 683
Query 758 GC-AGCGATTAGAGAATGGACCGATGGCCAA-AGCATGGAGATGATATTGATAGGAA 812
|| | || ||||||| ||||||||||| || | ||||||| |||| | || ||||
Sbjct 684 GCTACCG-TTAGAGATTGGACCGATGGAGAAGAT-ATGGAGAGGATACTAAT-GGAA 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43726985799
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5