BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73020.1
Length=2551
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476432 jgi|Araly1|476432|fgenesh2_kg.2__1562__AT1G73020.1 3783 0.0
> Ahg476432 jgi|Araly1|476432|fgenesh2_kg.2__1562__AT1G73020.1
Length=2526
Score = 3783 bits (2048), Expect = 0.0
Identities = 2402/2565 (94%), Gaps = 56/2565 (2%)
Strand=Plus/Plus
Query 2 TTTCAAATTCAAACCCCAAATGCTTTTGTCTTGTCTCTTCCATTTC-CCAGAAACGtttt 60
||||||||||||||||| || || |||||||||||||||||| ||| ||||||||| |||
Sbjct 1 TTTCAAATTCAAACCCCGAAGGC-TTTGTCTTGTCTCTTCCA-TTCTCCAGAAACG-TTT 57
Query 61 tttGAAGTAATGGAAGATTCAAATTCGTGAGAGAT-ACGTAGTAAAT-TAGGTCCTTTTC 118
| |||| ||| | |||||||||||||||||||||| ||| || | || | | ||||
Sbjct 58 TCTGAATTAACGCAAGATTCAAATTCGTGAGAGATAACG-AG-AGATACATTTTTTTTTA 115
Query 119 GTGGAATGTTGGAATCGAATTCTTGATTTTTGCAGTGTTCTGAC-TTAAAACCCTGATCC 177
||||||||||||||| |||||||||| ||||||||||| ||| |||||||||||||||
Sbjct 116 AAGGAATGTTGGAATCGTATTCTTGATTGTTGCAGTGTTCCGACTTTAAAACCCTGATCC 175
Query 178 CCTTTTGTGGCCCAGAAACCGGAAAATTAGATTAATTACAGAGGA-GAAAAGTAGTTCAG 236
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 176 CCTTTTGTGGCCCAGAAACCGGAAAATTAGATTAATTACAGGGGAGGAAAAGTAGTTCAG 235
Query 237 AG-GaaaaaaaGTGAATAAAGGTGGATTCTTTGGTGAATACACATTTGGGCATTTTGAGT 295
|| |||||||||||||||| || | | | | || | |||||||
Sbjct 236 AGAAAAAAAAAGTGAATAAA---GG------T-G-G---A-AC-------C--TTTGAGT 271
Query 296 CAGATCTTAGAAAAAGGA-AGCTTTCCAGCTACTGAGAAGAAATCTCAAAATTCTGCTTG 354
|||||||||||| || || ||||| ||||||||||||||||||||| ||||| | ||||
Sbjct 272 CAGATCTTAGAAGAATGAGGGCTTT-CAGCTACTGAGAAGAAATCTC-AAATTTTTCTTG 329
Query 355 TGTGA-TAGGGTTTTTGGAAATGAATGGGAGTAATGGGGAGGAGCGAGTTGTTCACGAGG 413
||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 TGTGAGT-CGGTGTTTGGAAATGAATGGGAGTAATGGGGAGGAGCGAGTTGTTCACGAGG 388
Query 414 TTGCAATGGTGGTTCCTAAGAGGGTTCTGGAAGAAGAAGAAGGAGACTGTGTTGAGGTTT 473
|||||||||||||||||||||||||||| | |||||||||||| ||||||||||| |||
Sbjct 389 TTGCAATGGTGGTTCCTAAGAGGGTTCT-G--GAAGAAGAAGGAAACTGTGTTGAGTTTT 445
Query 474 TGGTGACTGAGCTAAGGAAGAAAGGGATGGTTGTTGATAGAGTCGTCGGTCTTGCTCATG 533
|||||||||| |||| ||||| ||||||| |||||||||||||||||||||| || |||
Sbjct 446 TGGTGACTGAACTAAAGAAGAGAGGGATGATTGTTGATAGAGTCGTCGGTCTCGCAGATG 505
Query 534 AGTTTCTCAAGGTAGCAGCTCCTTCGGAGATCTTGGGCAATGCAGCTGCAGAGCTTCATA 593
||||||||||||| |||||||||| ||||| ||||||||||||||| |||||||||||||
Sbjct 506 AGTTTCTCAAGGTCGCAGCTCCTTTGGAGACCTTGGGCAATGCAGCAGCAGAGCTTCATA 565
Query 594 TACGCAAACCTACTCGTCTCGGAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTT 653
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 566 TACGTAAACCTACTCGTCTCGGAATTGATCTGCCCTTTGAGATGCAAGGGTCTGAGGCTT 625
Query 654 TCATTCGGCAACCTGATGGGTTATTATTCAGCTGGTTTGAACGTTTTCGGTGCTATCAAC 713
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 626 TCATTCGGCAACCTGATGGGTTACTGTTCAGCTGGTTTGAACGTTTTCGGTGCTATCAAC 685
Query 714 ATCTTATTTATGGAATTGTAAACTCTGGTGGACACGATGTCACTCTGAAACTTGACGGCA 773
|||||||||| ||||||||||||| ||||||| |||||||||||||||||||| ||||||
Sbjct 686 ATCTTATTTACGGAATTGTAAACTGTGGTGGATACGATGTCACTCTGAAACTTAACGGCA 745
Query 774 GAGAGTTTTGTTGGACAGCAGGGGAATCATTACTTCGAAGGTTGGAATCAGAGGGCGTCA 833
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 GAGTGTTTTGTTGGGTAGCAGGGGAATCATTACTTCGAAGGTTGGAATCAGAGGGCGTCA 805
Query 834 TTAAACAAATGTTTCCTCTTCATGATGAACTCAAGAGAAAGGAACTTCTCCAAAATTGGG 893
||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||
Sbjct 806 TTAAACAAATGTTTCCTCTTCATGATGAATTCAAGAGGAAGGAACTTCTCCAAACTTGGG 865
Query 894 CATTAAATTGGTGGAACTGCACAAACCAACCAATTGATCAGATCTACTCTTACTTTGGTG 953
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 866 CATTAAATTGGTGGAACTTCACAAACCAACCAATTGATCAGATCTACTCTTACTTCGGTG 925
Query 954 CAAAGATTGGAGTCTACTTTTCGTTCTTGGGAATGTATACGCAATGGTTGATATTTCCAG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 CAAAGATTGGAGTCTACTTTTCGTTCTTGGGAATGTATACGCAATGGTTGATATTTCCAG 985
Query 1014 CCTTACTTGGGTTTATAGTGCAGATGGTTGATTTTGGATCCTTGCAGTTTCTTGCTCTCC 1073
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 CCTTACTGGGGTTTATAGTGCAGATGGTTGATTTTGGATCCTTGCAGTTTCTTGCTCTCC 1045
Query 1074 CAAGTTTCTTTGTGGGCACAATACTCTGGGCTGCCTTGTTTCTTCAGTTCTGGAAACGTA 1133
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 CAATTTTCTTTGTGAGCACAATACTCTGGGCTGCCTTGTTTCTTCAGTTCTGGAAACGTA 1105
Query 1134 AAAATGCGGCCTTGTTAGCCAGATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGAT 1193
|||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 1106 AAAACGCGGCCTTGTTAGCTAGATGGCAAATTAATTGTTTAGTTGGCCCCAGCCAAGGAT 1165
Query 1194 ATAGATTTCTCGGAATGGAATGGAGTTCCCTTCCTTTTCCAAAGGAGCTTATTAAGAATC 1253
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1166 ATAGATTTCTCGGAATGGAATGGAGTTCCCTTCCGTTTCCAAAGGAGCTTATTAAGAATC 1225
Query 1254 TCGGAAATGAGAGAGCCAAAGAGAAGGAAGCCTACCAGAGATATGAATGGTTTGCTTATC 1313
|||||||||||||| |||||||||||||||| || || ||||||||||||||||||||||
Sbjct 1226 TCGGAAATGAGAGATCCAAAGAGAAGGAAGCATATCAAAGATATGAATGGTTTGCTTATC 1285
Query 1314 GCAAGAGGTTTAGGAATGATGTTCTTGTTATCATGAGCATTATCTGCCTCCAACTTCCAT 1373
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1286 GCAAGAGGTTTAGGAATGATGTTCTAGTTATCATGAGCATTATCTGCCTCCAACTTCCAT 1345
Query 1374 TTGAGCTCGCGTATGCTCATATTTTCGAGATTATCACATCTGATATAATCAAGTACGTAT 1433
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1346 TTGAGCTGGCGTATGCTCATATTTTCGAGATTATCACATCTGACATAATCAAGTATGTAT 1405
Query 1434 TGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCTAGGAGGGAAAGTATCTG 1493
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1406 TGACAGCTATCTACCTTCTAATCATTCAGTACCTCACTCGGCTAGGAGGCAAAGTATCTG 1465
Query 1494 TCAAGCTGATAAACCGAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTT 1553
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1466 TCAAGCTGATAAATCGAGAAATCAACGAGAGTGTGGAATATCGAGCTAATAGCTTGATTT 1525
Query 1554 ACAAAGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTTCTTT 1613
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 1526 ACAAAGTTTTTGGGCTCTATTTTATGCAGACATACATTGGGATCTTCTATCACGTTCTTT 1585
Query 1614 TACATCGAAACTTCATGACACTTCGACAAGTATTGATCCAACGGTTAATAATCTCACAGG 1673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 TACATCGAAACTTCATGACACTTCGACAAGTATTGATCCAACGGTTAATAATCTCACAGG 1645
Query 1674 TTTTCTGGACTTTGATGGATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATC 1733
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1646 TTTTCTGGACTTTGATGGATGGTTCTTTACCTTATCTTAAGTACAGCTACAGAAAATATA 1705
Query 1734 GAGCTAGGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCCT 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 GAGCTAGGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCCT 1765
Query 1794 CAAGAGTGGAGAAGGAATATTTCAAGCCTACATATTCAGCAAGCATTGGGGTAGAACTTG 1853
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1766 CAAGAGTGGAGAAGGAATATTTCAAGCCTACATATTCAGCAAGCATTGGAGTAGAACTTG 1825
Query 1854 AAGATGGACTTTTCGATGATTCCCTCGAGCTGGCTTTGCAGTTTGGAATGATTATGATGT 1913
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1826 AAGATGGACTTTTTGATGATTCCCTCGAGCTGGCTTTGCAGTTTGGAATGATTATGATGT 1885
Query 1914 TTGCTTGTGCCTTCCCTCTTGCTTTTGCCCTTGCTGCAGTGAGCAATGTAATGGAAATAA 1973
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1886 TTGCTTGTGCCTTCCCTCTTGCTTTTACCCTTGCTGCAGTGAGCAATGTAATGGAAATAA 1945
Query 1974 GAACAAATGCTTTAAAGCTTTTGGTGACACTTCGAAGACCTCTTCCTCGTGCTGCTGCAA 2033
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1946 GAACAAATGCTTTAAAGCTATTGGTGACACTTCGAAGACCTCTTCCTCGTGCTGCTGCAA 2005
Query 2034 CAATTGGAGCTTGGTTAAACATCTGGCAGTTTCTAGTAGTTATGTCCATATGCACAAACT 2093
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2006 CAATTGGAGCTTGGTTAAACATATGGCAGTTTCTAGTAGTAATGTCCATATGCACAAACT 2065
Query 2094 CGGCACTCTTGGTATGCTTATATGATCAAGAAGGCAAATGGAAGATTGAACCGGGACTCG 2153
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2066 CGGTACTCTTGGTATGCTTATATGATCAAGAAGGCAAATGGAAGATTGAACCGGGGCTCG 2125
Query 2154 CCGCAATTCTCATCATGGAACATGTACTCTTACTTCTGAAATTTGGACTCTCTCGTCTCG 2213
| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 2126 CGGCAATTCTCATCATGGAACATGTACTTTTGCTTCTGAAATTTGGTCTCTCTCGTCTCG 2185
Query 2214 TCCCTGAAGAGCCTGCTTGGGTTAGAGCCAGTCGTGTGAAGAACGTGACACAAGCACAAG 2273
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2186 TCCCTGAAGAGCCTGCTTGGGTTAGAGCCAGTCGTGTGAAGAATGTGACACAAGCACAAG 2245
Query 2274 ACATGTACTGTAAACAGCTCTTAAGAAGCATTTCTGGTGAATTTAA-TTCCTTGACAAAA 2332
|||||||||||||||||||||| |||||||||||||||||||| | |||| ||||||||
Sbjct 2246 ACATGTACTGTAAACAGCTCTTGAGAAGCATTTCTGGTGAATT-AGCTTCCATGACAAAA 2304
Query 2333 CCTGAACAAGAACAA---CAACAAGACTCAG-AGCGCTTTTGACCTGAAAGATAAGAAAC 2388
||||||||||||||| ||||||||||| | |||||||||||||||||| || ||||||
Sbjct 2305 CCTGAACAAGAACAAGAACAACAAGACTCGGGAGCGCTTTTGACCTGAAAAATCAGAAAC 2364
Query 2389 AAAGAACACCAAAAGGCTCTCACTTTTT----GTGTGACAGTTTGATTTTTCGTTGCCAC 2444
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 2365 AAAGAACACCAAAAGGCTCTCTCTTTTTTTTTGTGTGACAGTTTGATTTTTCGTTGCCAC 2424
Query 2445 CTTTTGTGCATAGTAGCTGTGTGATAATATCTTGAAGACATTGTATCTTCGGTTTTGTCT 2504
||||||||||||| | |||||||| | | ||||||||| ||||||||||||||||||||
Sbjct 2425 CTTTTGTGCATAGAAACTGTGTGAGA-T--CTTGAAGACTTTGTATCTTCGGTTTTGTCT 2481
Query 2505 ATAACACGTTAACTTATGAGGAAATCATTATAATATATATTTGAT 2549
||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2482 ATAACACGTTAACGTACGAGGAAATCATTATAATATATATTTGAT 2526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96177868625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5