BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73030.1
Length=998
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476433 jgi|Araly1|476433|fgenesh2_kg.2__1563__AT1G73030.1 1583 0.0
> Ahg476433 jgi|Araly1|476433|fgenesh2_kg.2__1563__AT1G73030.1
Length=978
Score = 1583 bits (857), Expect = 0.0
Identities = 939/979 (96%), Gaps = 4/979 (0%)
Strand=Plus/Plus
Query 4 AACGCGTCGAGATATTTTCCCCAAATACAGAG-AAACCCTAAAGTCTCTGTTTTTGAGAA 62
|||||||||||||||||| || |||||||||| ||||||||||||||||||||||| |||
Sbjct 1 AACGCGTCGAGATATTTT-CCTAAATACAGAGAAAACCCTAAAGTCTCTGTTTTTGCGAA 59
Query 63 TTTT-TCTACCGATAGATCCAAGCGAATTGATCTAGAGGAATTGATCCAACATGGGTAAC 121
|||| ||||| |||||||| |||| |||| |||||||||||| ||| |||||||||||||
Sbjct 60 TTTTCTCTACAGATAGATCGAAGCTAATT-ATCTAGAGGAATCGATTCAACATGGGTAAC 118
Query 122 ACAGATAAGCTGATGAATCAGATATTCGATTTGAAATTTACGTCAAAGTCTCTGCAAAGG 181
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 119 ACAGATAAGCTGATGAATCAGATATTCGATTTGAAATTCACGTCCAAGTCTCTGCAAAGG 178
Query 182 CAATCAAGGAAGTGTGAGAAGGAAGAGAAAGCAGAGAAATTGAAGGTGAAGAAGGCTATC 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 179 CAATCAAGGAAGTGTGAGAAGGAAGAGAAAGCAGAGAAATTGAAGGTGAAGAAGGCGATC 238
Query 242 GAGAAGGGTAATATGGATGGTGCTCGGATCTACGCTGAGAACGCCATTCGTAAGCGTAGC 301
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GAGAAGGGGAACATGGATGGTGCTCGGATCTACGCTGAGAACGCCATTCGTAAGCGTAGC 298
Query 302 GAGCAGATGAACTATCTCCGTCTCGCTTCTCGCCTTGACGCTGTTGTTGCTCGTCTTGAT 361
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 GAGCAGATGAACTACCTCCGTCTCGCTTCTCGCCTGGACGCTGTTGTTGCTCGTCTTGAT 358
Query 362 ACTCAGGCTAAGATGACCACCATCACCAAATCCATGACCAATATCGTCAAATCCCTTGAG 421
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 359 ACTCAGGCTAAGATGACCACCATCACCAAATCCATGACCAATATCGTCAAGTCCCTTGAG 418
Query 422 TCTTCTCTTGCCACAGGGAATCTACAGAAGATGTCAGAGACAATGGATTCATTCGAGAAG 481
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCTTCGCTTGCCACAGGGAATCTACAGAAGATGTCAGAGACAATGGATTCATTCGAGAAG 478
Query 482 CAGTTTGTGAACATGGAGGTCCAAGCTGAGTTCATGGAGAATGCTATGGCTGGTTCAACT 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CAGTTTGTGAACATGGAGGTCCAAGCTGAGTTCATGGAGAATGCTATGGCTGGTTCAACT 538
Query 542 TCATTGTCCACTCCAGAAGGCGAAGTCAACAGCCTTATGCAGCAGGTGGCAGATGACTAT 601
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 539 TCATTGTCCACTCCAGAAGGCGAAGTCAACAGCCTTATGCAGCAGGTTGCAGATGACTAT 598
Query 602 GGTTTGGAAGTCTCTGTGGGGCTTCCTCAGCCTGCTGGTCATGCCATTCCTACTAAGACT 661
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGTTTGGAAGTCTCTGTGGGACTTCCTCAGCCTGCTGGTCATGCCATTCCTACTAAGACA 658
Query 662 GAGGAGAAAGTCGATGAGGATGATTTGTCGAGGAGGCTTGCGGAGCTTAAAGCCAGAGGA 721
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 659 GAGGAGAAAGTCGATGAGGACGATTTGTCAAGGAGGCTTGCAGAGCTTAAAGCCAGAGGA 718
Query 722 TAAATGCGCTAACCAACATTCATGCTTGGATTACCTGCCACTTTGCATGCGATCCTTATC 781
||| |||||||||| |||| | |||||||| |||||||||||||||| ||||||||||||
Sbjct 719 TAAGTGCGCTAACCTACATCCGTGCTTGGACTACCTGCCACTTTGCACGCGATCCTTATC 778
Query 782 GAATTGTTGCTTCTATTATCCGCAAACACGGGCGTATTTGTGTATATTGCTCACTTTGAA 841
||||||||||||||||| || ||||||| |||||||||| ||||||||||||||||||||
Sbjct 779 GAATTGTTGCTTCTATTTTCTGCAAACATGGGCGTATTTATGTATATTGCTCACTTTGAA 838
Query 842 ATATGCTTTGTTTATAACTTTATATAAAAAACCTTCGTGTGTTTTTAGTTTTTACCATTT 901
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 839 ATATGCTTTGTTTATAACTTTATATAAAAAACCTTCGTGTGGTTTTAGTTTTTACCATTT 898
Query 902 GAATGATATGCTTTCCTTTTGAGTTGTTCATTAAAGAGTGTTTTGCTCAGTCACTTTTGG 961
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 899 TAATGATATGCTTTCCTTTTGAGTTGTGCATTAAAGAGTGTTTTGCTCAGTCGCTTTTGG 958
Query 962 TCTCATGGACTAAGATACA 980
|||||||||||||||||||
Sbjct 959 TCTCATGGACTAAGATACA 977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37093598241
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5