BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73040.1
Length=716
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908915 jgi|Araly1|908915|Al_scaffold_0002_1996 848 0.0
> Ahg908915 jgi|Araly1|908915|Al_scaffold_0002_1996
Length=531
Score = 848 bits (459), Expect = 0.0
Identities = 508/532 (95%), Gaps = 2/532 (0%)
Strand=Plus/Plus
Query 87 ATGGATCAACAACAACAAGGTGATAAGAATCTGACAGTGTTCGTAGGACCCTGGGGAGGA 146
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1 ATGGATCAACAACAACAAGGTGATAAGAATCTGACTGTGTTCGTAGGACCCTGGGGAAGA 60
Query 147 AATGGAGGAACCACTTGGGATGATGGGATTTATGATGGTGTCCGTGAGATCAGACTTGTT 206
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 61 AATGGAGGAACCACTTGGGATGATGGGATCTATCATGGTGTCCGTGAGATCAGACTTGTA 120
Query 207 TATGACCATTGCATTGACTCCATCTCGGTGATCTACGATAAGAATGGTAAACCCGC-AAA 265
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TATGATCATTGCATTGACTCCATCTCGGTGATCTACGATAAGAATGGTAAACCCGCGAAA 180
Query 266 GTCAGAGAAGCATGGAGGTGTGGGAGGCAACAAAACATCAGAGATAAAGCTGCAATACCC 325
|||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||
Sbjct 181 -TCAGAGAAGCATGGAGGTGTAGGAGGCAACAAAACAGCAGAGCTAAAGCTGCAATACCC 239
Query 326 AGAGGAGTATCTGACTGGCGTGAGTGGCTACTACTGTCCAATGGTTAACAGTGGCACTCC 385
||| ||||||||||||||||||||||||||||||| | | ||||| |||||||||||||
Sbjct 240 AGATGAGTATCTGACTGGCGTGAGTGGCTACTACTCTATAGTGGTTGACAGTGGCACTCC 299
Query 386 TGTAATCAGATCAATGACCTTCAAGAGCAATAAACAAGTGTATGGACCTTATGGAGTTGA 445
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 300 TGTAATCAGATCAATGACCTTCAAGAGCAATAAACAGGTATATGGACCTTATGGAGTTGA 359
Query 446 ACAGGGAACACCCTTCACTTTCTCAGTCAATGGGGGACGCATTGTTGGTATGAACGGTAG 505
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 360 ACAGGGAACACCCTTCACTTTCTCAGTCAATGGGGGACGCATTGTTGGCATGAGCGGTAG 419
Query 506 GAGTGGCTGGTACCTTGACTCCATCGGCTTCCATCTATCACGCCCTAAATCAACCAAGAT 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGTGGCTGGTACCTTGACTCCATCGGCTTCCATCTATCACGCCCTAAATCAACCAAGAT 479
Query 566 GATCAACAAGCTCCGAAAGAAGATTCACTGGCTCACAAGGATAGTAGCATGA 617
|||||||||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct 480 GATCAACAAGCTTCTAAAGAAGATTCACTGGCTCACAAGGATTGTAGCATGA 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26342935647
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5