BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73066.1
Length=1931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476437 jgi|Araly1|476437|fgenesh2_kg.2__1567__AT1G73066.1 2776 0.0
Ahg908919 jgi|Araly1|908919|Al_scaffold_0002_2000 1459 0.0
> Ahg476437 jgi|Araly1|476437|fgenesh2_kg.2__1567__AT1G73066.1
Length=1815
Score = 2776 bits (1503), Expect = 0.0
Identities = 1703/1801 (95%), Gaps = 8/1801 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAATCTTGGGTTGTTCCAAATTCTTTTGCTATTCTGTCTCTTTGTCTC-GGTCCG 59
||||||||||||||||||||| |||||||||||||||||||||||||||| || || |||
Sbjct 1 ATGGAGAATCTTGGGTTGTTCAAAATTCTTTTGCTATTCTGTCTCTTTGTTTCTGG-CCG 59
Query 60 CATAGTTTCTGTTTCTTGTTTAAATTCAGATGGGTTAACTTTACTCTCGCTTCGGAAGCA 119
|||||| |||||||||||| |||||||||||||||||||||| |||||||||||||| |
Sbjct 60 CATAGTCTCTGTTTCTTGTCTAAATTCAGATGGGTTAACTTTGCTCTCGCTTCGGAATTA 119
Query 120 TTTGGACAAAGTACCACCAGAATTAACTTCGACATGGAAGACTAACGCATCTGAAGCCAC 179
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 TTTGGACAAAGTACCACCAGAATTAACTTCGACATGGAAGACAAACGCATCTGAAGCCAC 179
Query 180 TCCATGTAACTGGTTTGGTATTATCTGTGATGATTCTAAGAAGGTTACGTCTCTCAACTT 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCCATGTAACTGGTTTGGTATCATCTGTGATGATTCTAAGAAGGTTACGTCTCTCAACTT 239
Query 240 CACCGGTTCAGGTGTTTCAGGCCAATTGGGTCCTGAAATAGGGCAACTCAAAAGCTTAGA 299
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 240 CACCGGTTCAGGTGTTTCAGGCCGATTGGGTCCTGAAATAGGGCAGCTCAAAAGCTTAGA 299
Query 300 GATATTGGATATGAGTTCTAACAATTTCTCTGGGATTATACCTTCCAGTTTAGGGAACTG 359
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GATTTTGGATTTGAGTTCTAACAATTTCTCTGGGATTATACCTTCCAGTTTAGGGAACTG 359
Query 360 TAGCTCACTTGTGTACATTGATTTGTCTGAAAATAGTTTCTCTGGTAAGGTCCCCGATAC 419
||| ||||| ||||||||||||||||||||||| || |||||||||||| |||| |||||
Sbjct 360 TAGTTCACTGGTGTACATTGATTTGTCTGAAAACAGGTTCTCTGGTAAGATCCCGGATAC 419
Query 420 TCTCGGTAGCTTGAAGAGCTTGGCCGATTTGTATCTTTACAGCAACTCTCTTACT-GGGG 478
||| ||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct 420 TCTAGGTAGCTTGAAGAGCTTGGCCGATTTGTATCTTTACAGCAACTTTCTTA-TAGGGG 478
Query 479 AATTGCCTAAATCCTTGTTTCGCATTCCGGTGTTGAATTATCTGCATGTTGAGCATAACA 538
| ||||||| |||||||||||| ||||||| ||||||||||||||||| ||||||||||
Sbjct 479 AGTTGCCTAGATCCTTGTTTCGAATTCCGGCATTGAATTATCTGCATGTGGAGCATAACA 538
Query 539 ACCTAACCGGGTTAATCCCTCAAAATGTTGGTGAAGCTAAGGAACTTCTTCATCTGCGTT 598
|||| ||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 539 ACCTGACCGGGTTAATTCCTCAAAATGTTGGTGAGGCTAAGGAACTTCTTGATCTGCGTT 598
Query 599 TGTTTGACAATCAGTTTACTGGTACAATCCCTGAGTCTATTGGAAACTGCAGCAAGCTGG 658
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGTTTGACAATCAGTTTTCTGGTACAATCCCTGAGTCTATTGGAAACTGCAGCAAGCTGG 658
Query 659 AGATTCTGTATCTGCACAAGAATAAGTTAGTTGGTTCATTGCCTGCAAGTCTCAATCTTT 718
||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 AGATTTTGTATTTGCACAAGAACAAGTTAGTTGGTTCATTGCCTGCAAGTCTCAATCTTT 718
Query 719 TGGAGAGTCTCACTGATCTGTTTGTTGCAAACAACAGCCTAAGAGGAACAGTTCAGTTTG 778
|||||| ||||||||| |||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 719 TGGAGAATCTCACTGACCTGTTTGTTGCAAATAACAGCCTACGAGGAACAGTTCAGTTTG 778
Query 779 GCTCAACCAAATGCAGGAATCTGGTGACTTTAGATTTGTCATACAATGAATTCGAAGGTG 838
| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
Sbjct 779 GTTCAACCAAATGCAGGAATCTGGTAACTTTAGATTTGTCATACAATCAATTCGAAGGCG 838
Query 839 GTGTCCCTCCTGAACTGGGAAATTGCAGTAGCCTTGACGCTTTAGTCATTGTGAGTGGTA 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 839 GTGTCCCTCCTGAACTGGGAAATTGCAGTAGCCTTGACGCTTTAGTCATTGTGAAAAGTA 898
Query 899 ACTTGTCAGGTACAATCCCTTCCTCATTGGGTATGTTGAAGAATCTCACAATTCTTAACC 958
| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 899 ATTTGTCAGGTAAAATCCCTTCATCATTGGGTATGTTAAAGAATCTCACAATTCTTAACC 958
Query 959 TTTCCGAGAATCGTCTTTCTGGGAGTATCCCCGCGGAGCTCGGGAACTGCAGTAGCTTGA 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 959 TTTCCGAGAATCGTCTTTCTGGGAGTATCCCCGCGGAGCTCGGGAACTGCAGCAGCTTGA 1018
Query 1019 ACTTGTTGAAGCTGAACGATAACCAGCTTGTAGGTGGAATACCAAGTGCATTAGGTAAGC 1078
|||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||
Sbjct 1019 ACTTGTTGAAGCTGAACGATAACCAGCTTGAAGGCGGAATACCGAGTGCATTAGGTAAGC 1078
Query 1079 TGAGGAAGCTAGAAAGTCTGGAGCTTTTCGAAAACCGGTTTTCGGGCGAGATTCCTATCG 1138
| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 1079 TAAGGAAGCTAGAAAGTCTGGAGCTTTTTGAAAACCGGTTTTCGGGTGAGATTCCTATTG 1138
Query 1139 AGATATGGAAGATTCAGAGTCTTACGCAGTTGCTAGTTTATCGGAACAATCTCACAGGAA 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1139 AGATATGGAAGATTCAGAGTCTTACGCAGTTGCTAGTTTATCGGAACAATCTCACAGGGA 1198
Query 1199 AATTACCAG-AGGAAATAACCAAGCTCAAGAATCTCAAGATCGTTACTCTCTTCAACAAT 1257
||||||| | ||||||||||| ||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1199 AATTACC-GAAGGAAATAACCGAGCTCAAGAATCTGAAGATTGTTACTCTCTTTAACAAT 1257
Query 1258 AGCTTTTATGGAGTGATACCACCCAATTTAGGTCTGAACAGCAACTTGGAGATTATCGAT 1317
||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |||
Sbjct 1258 AGCTTTTATGGAGTGATACCACCTGGTTTAGGTCTGAACAGCAACCTAGAGATTATTGAT 1317
Query 1318 TTCATTGGTAACAATTTTACAGGTGAGATACCACGAAATCTCTGCCATGGAAAGATGTTG 1377
|| |||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 1318 TTGATTGGTAACAATCTTACAGGTGAGGTACCGCCAAATCTCTGCCATGGAAAGATGTTG 1377
Query 1378 ACAGTGTTTAACTTAGGATCTAACCGGCTTCACGGCAAAATACCGGCATCCGTTAGTCAG 1437
|||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct 1378 ACAGTGTTTAACTTAGGATCTAACCGGCTTCATGGCAAAATACCGACATCTGTTAGTCAG 1437
Query 1438 TGCAAGACTCTAAGCAGATTCATCCTCAGAGAAAACAACCTTTCAGGCT-TTCTTCCTAA 1496
||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||| |
Sbjct 1438 TGCAAGACTCTAAGCAGATTCATTCTCAGAGAAAACAACCTTTCAGG-TGTTCTTCCTGA 1496
Query 1497 GTTTTCGAAGAATCAAGATCTTTCGTTTCTCGACCTCAATAGCAACAGCTTCGAAGGACC 1556
|||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1497 GTTTTCTAAGAATCAAGATCTTTCGTTTCTCGATCTCAATAGCAACAACTTCGAAGGACC 1556
Query 1557 AATCCCTCGTAGTCTCGGAAGCTGTAGGAATCTCACGACCATCAATCTGTCTCGGAACAA 1616
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1557 AATCCCTCGTACCCTCGGAAGCTGTAGGAATCTCACGACCATCAATCTGTCTAGGAACAA 1616
Query 1617 GCTCACGAGGAATATTCCTAGAGAACTTGAGAATCTACAAAACCTTAGTCACCTGAATCT 1676
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 GCTCACGGGGAATATTCCTAGAGAACTTGAGAATCTACAAAACCTTAGTCACCTGAATCT 1676
Query 1677 TGGGTCTAACTTATTAAACGGTACGGTTCCTTCAAAGTTTAGTAACTGGAAAGAGTTGAC 1736
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 TGGGTTTAACTTATTAAACGGTACGGTTCCTTCAAAGTTTAGTAACTGGAAAGAGTTGAC 1736
Query 1737 CACTTTGGTTCTCTCCGGAAACCGGTTTTCAGGATTCGTTCCGCCCGATCGCCACTCTTA 1796
|||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||
Sbjct 1737 CACTTTGGTTCTCTCCGGAAACCGTTTTTCAGGAGTCGTTCCGCCGGATCGCCACTCTTA 1796
Query 1797 G 1797
|
Sbjct 1797 G 1797
> Ahg908919 jgi|Araly1|908919|Al_scaffold_0002_2000
Length=3369
Score = 1459 bits (790), Expect = 0.0
Identities = 1409/1700 (83%), Gaps = 73/1700 (4%)
Strand=Plus/Plus
Query 1 ATGGAGAATCTTGGGTTGTTCCAAATTC-T-TT-TGCTATTCTGTCTCTTTGTCTCGGTC 57
||| ||||||||||||||||| |||||| | || | | |||||||||||| ||||| |
Sbjct 1 ATGAAGAATCTTGGGTTGTTCAAAATTCTTCTTCTTTTCTTCTGTCTCTTTCTCTCGACC 60
Query 58 CGCATAGTTTCTGTTTCTTGTTTAAATTCAGATGGGTTAACTTTACTCTCGCTTCGGAAG 117
| ||||||||||||||||||| |||| |||||||||||| || |||||||||||| ||||
Sbjct 61 CACATAGTTTCTGTTTCTTGTCTAAACTCAGATGGGTTAGCTCTACTCTCGCTTCTGAAG 120
Query 118 CATTTGGACAAAGTACCACCAGAATTAACTTCGACATGGAAGACT-AACGCATCTGAAGC 176
|||||||| ||||||||||| || |||||||||||||||||| | ||||||||||||||
Sbjct 121 CATTTGGATAAAGTACCACCTCAAGTAACTTCGACATGGAAGA-TAAACGCATCTGAAGC 179
Query 177 CACTCCATGTAACTGGTTTGGTATTATC-TGTGATGATTCTAAGAAGGTTACGTCTCTCA 235
|| |||||||||||||||||||| | | ||||||||||||||||| ||| || ||||||
Sbjct 180 AACCCCATGTAACTGGTTTGGTATCA-CTTGTGATGATTCTAAGAATGTTGCGGCTCTCA 238
Query 236 ACTTCAC-CGGTTC-AGGTGTTTCAGGCCAATTGGGTCCTGAAATAGG-GCAACTCAAAA 292
||||||| | |||| ||| |||||||| ||||||||||||||||| || | | |||||||
Sbjct 239 ACTTCACTC-GTTCTAGG-GTTTCAGGTCAATTGGGTCCTGAAATTGGAG-AGCTCAAAA 295
Query 293 GCTTAG-AGATATTGGATATGAGTTCTAACAATTTCTCTGGGATTATACCTTCCAGTTTA 351
|||| | |||| |||||| ||||| |||||||||||||||||| ||||||||||||||||
Sbjct 296 GCTT-GCAGATTTTGGATCTGAGTACTAACAATTTCTCTGGGACTATACCTTCCAGTTTA 354
Query 352 GGGAACTGTAGCTC-A-CTTGTGTACAT-T-GATTTGTCTGAAAATAGTTTCTCTGGTAA 407
|| ||||||| | | | || || ||| | | ||||||||||||||| | ||| |||||||
Sbjct 355 GGAAACTGTA-C-CAAGCTCGT-TAC-TCTAGATTTGTCTGAAAATGGATTCACTGGTAA 410
Query 408 GGTCCCCGATACTCTCGGTAGCTTGAAGAGCTTGGCCGAT--TTGTATCTTTACAGCAAC 465
| |||| |||||||||| ||||||||||||||||| | | || |||||||||| |||
Sbjct 411 GATCCCAGATACTCTCGATAGCTTGAAGAGCTTGG-AGGTGCTT-TATCTTTACATAAAC 468
Query 466 -TCTCTTACTGGGGAATTGCCTAAATCCTTGTTTCGCATTCCG-GTGTTG-A-ATTATCT 521
|| || ||||| || || ||| ||||||||||||| |||||| | |||| | ||| | |
Sbjct 469 TTC-CTCACTGGTGAGTTACCTGAATCCTTGTTTCGAATTCCGAG-GTTGCAGATT-T-T 524
Query 522 GCATGTTGAGCATAACAACCTAACCGGGT-TAATCCCTCAAAATGTTGGTGAAGCTAAGG 580
|| ||||| ||||||| ||||| ||| || || |||| ||||||||| |||||||
Sbjct 525 AAATCTTGAGTATAACAATTTAACC-GGTCCGATTCCGCAAAGTGTTGGTGATGCTAAGG 583
Query 581 AACTTCTTCATCTGC-GTTTGTTTGAC-AATCAGTTTACTGGT-ACAATCCCTGAGTCTA 637
| |||||| |||| | || ||| || | ||||||||| ||||| || ||||||||||| |
Sbjct 584 AGCTTCTTGATCT-CAGTATGTATG-CGAATCAGTTTTCTGGTAAC-ATCCCTGAGTCGA 640
Query 638 TTGGAAACTGCAGCAAG-CTGGAGATTCTGTATCTGCACAAGAATAAGTTAGTTGGTTCA 696
|||| |||||||| || ||| || || ||||| |||||| ||| ||||||||||||||
Sbjct 641 TTGGGAACTGCAG-TAGTCTGCAGGTTGTGTATTTGCACAGGAACAAGTTAGTTGGTTCG 699
Query 697 TTGCCTGCAAGTCTCAATCTTTTGGAGAGTCTCACTGATCTGTTTGTTGCAAACAACAGC 756
|| |||| ||||||||||||||||| || |||||||||||| ||||||| ||||||||
Sbjct 700 TTACCTGAAAGTCTCAATCTTTTGGGGAATCTCACTGATCTATTTGTTGGTAACAACAGT 759
Query 757 CTA-AGAGGAACAGTTCAGTTT-GGCTCAACCAAATGCAGGAATCTGGTGACTTTAGATT 814
||| | ||| | |||| |||| || ||| | || |||| |||| || ||||||||||||
Sbjct 760 CTACA-AGGGCCGGTTC-GTTTCGGATCATCTAATTGCAAGAATTTGTTGACTTTAGATT 817
Query 815 TGTCATACAATGAATTCGAAGGTGGTGTCCCTCCTGAACTGGGAAATTGCAGTAGCCTTG 874
|||| ||||| ||||||||||| ||||| || ||| | ||||||||||||||| |||||
Sbjct 818 TGTCCTACAACGAATTCGAAGGCGGTGTTCCAGCTGCATTGGGAAATTGCAGTAACCTTG 877
Query 875 ACGCTTTAGTCATTGT-GAGTGGTAACTTGTCAGGTACAATCCCTTCCTCATTGGGTATG 933
||||| |||| ||||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct 878 ACGCTCTAGTGATTGTGGA-TGGTAACTTGTCAGGTACAATTCCTTCCTCATTGGGTATG 936
Query 934 TTGAAGAATCTCACAATTCTTAACCTTTCCGAGAATCGTCTTTCTGGGAGTATCCCCGCG 993
|| ||||| || ||| || | |||||||||||||||||||| |||||||||||||||||
Sbjct 937 TTAAAGAAGCTTACAGTTATAAACCTTTCCGAGAATCGTCTCTCTGGGAGTATCCCCGCA 996
Query 994 GAGCTCGGGAACTGCAGTAGCTTGAACTTGTTGAAGCTGAACGATAACCAGCTTGTAGGT 1053
||||||||||| || |||||||||| |||||||||||||||| |||||||||||| ||||
Sbjct 997 GAGCTCGGGAATTGTAGTAGCTTGAGCTTGTTGAAGCTGAACAATAACCAGCTTGGAGGT 1056
Query 1054 GGA-ATACCAAGTGCATTAGGTAAGCTGAGGAAGCTAGAAAGTCTGGAGCTTTTCGAAAA 1112
|| ||||| ||| |||| |||||||| | ||| ||||||||| ||||||||||||||||
Sbjct 1057 -GAGATACCGAGTACATTGGGTAAGCTTAAGAAACTAGAAAGTTTGGAGCTTTTCGAAAA 1115
Query 1113 CCGGTTTTCGGGCGAGATTCCTATCGAGATATGGAAGATTCAGAGTCTTACGCAGTTGCT 1172
|||||||||||| ||||||||||| || |||||||||| |||||||||||||||||||||
Sbjct 1116 CCGGTTTTCGGGTGAGATTCCTATGGAAATATGGAAGAGTCAGAGTCTTACGCAGTTGCT 1175
Query 1173 AGTTTATCGGAACAATCTCACAGGAAAATTACCAGAGGAAATAACCAAGCTCAAGAATCT 1232
|||||||| ||||||||||||||| || |||| | |||||| || || | ||| |||
Sbjct 1176 AGTTTATCAAAACAATCTCACAGGAGAACTACCTGTGGAAATGACTGAGATGAAGCGTCT 1235
Query 1233 CAAGATCGTTACTCTCTTCAACAATAGCTTTTATGGAG-TGATACCACCCAATTTAGGTC 1291
||||||| || || |||||||| || |||||||||| | |||||| | |||||||
Sbjct 1236 AAAGATCGCGACGCTGTTCAACAACAGTTTTTATGGAGCT-ATACCATCGGGTTTAGGTG 1294
Query 1292 TGAACAGCAACTTGGA-GAT-TATCGA-TTTCATTGGTAACAATTTTACAGGTGAGATAC 1348
||||||||| ||| || || | | || ||| ||||||||||| ||||||| |||||||
Sbjct 1295 TGAACAGCAGCTTAGAAGAGGT-T-GACTTT-ATTGGTAACAAACTTACAGGAGAGATAC 1351
Query 1349 CAC-GAAATCTCTGCCATGGAAAGATGTTGACAGTGTTTAACTTAGGATCTAACCGGCTT 1407
| | ||| ||| |||||||||| || ||||| | | | || || || ||||| | ||||
Sbjct 1352 CGCCGAA-TCTATGCCATGGAAGGAAGTTGAGAATACTCAATTTGGGTTCTAATCTGCTT 1410
Query 1408 CACGGCAAAATACCGGCATCCGTTAGTCAGTGCAAGACTC-TAAGCAGATTCATCCTCAG 1466
|| |||| |||||| | || || |||| || ||||| | | || ||||||||||| ||
Sbjct 1411 CATGGCACAATACCAACTTCTATTGGTCACTGTAAGAC-CATCAGGAGATTCATCCTTAG 1469
Query 1467 AGAAAACAACCTTTCAGG-CTTTCTTCCTAAGTTTTCGAAGAATCA-AGATCTTT-CGTT 1523
|||||| ||||||||||| ||| || ||| ||||||| | |||| || |||| | ||
Sbjct 1470 AGAAAATAACCTTTCAGGTCTT-CTACCTGAGTTTTCTCGGGATCATAGC-CTTTTC-TT 1526
Query 1524 TCTCGACCTCAATAGCAACAGCTTCGAAGGACCAATCCCTCGTAGTCTCGGAAGCTGTAG 1583
||| || |||||||||||| ||| | |||||||||||| || || ||||||||||||||
Sbjct 1527 TCTTGATTTCAATAGCAACAACTTTGTAGGACCAATCCCGCGCAGCCTCGGAAGCTGTAG 1586
Query 1584 GAATCTCACGACCATCAATCTGTCTCGGAACAAGCTCACGAGGA-ATATTCCTAGAGAAC 1642
||||||| ||| |||||| |||||||| ||||| || ||| ||| | || ||| | |||
Sbjct 1587 GAATCTCTCGAGCATCAACCTGTCTCGAAACAAACTTACG-GGACAGATACCTCCACAAC 1645
Query 1643 TTGAGAATCTACAAAACCTT 1662
||| |||| |||||||||||
Sbjct 1646 TTGGGAATTTACAAAACCTT 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72561916725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5