BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73090.2
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476439 jgi|Araly1|476439|fgenesh2_kg.2__1569__AT1G73090.1 867 0.0
> Ahg476439 jgi|Araly1|476439|fgenesh2_kg.2__1569__AT1G73090.1
Length=982
Score = 867 bits (469), Expect = 0.0
Identities = 526/554 (95%), Gaps = 2/554 (0%)
Strand=Plus/Plus
Query 507 AGGCTTATATCTAGAGCATGGGAAATAGCAAGCACTCGGTATGAAGATCCAAAGTTAGCT 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 AGGCTTATATCTAGAGCATGGGAAATAGCAAGCACTCGGTATGAAGATCCAAAGTTAGCT 459
Query 567 AAAATGACTGCATCCAAGATATTCTCTGCTGGAAATGCGGAAATTCCAGTTGAATACTTC 626
|||||||||||||||||| |||||||| ||||| ||||||||||| || ||||||||||
Sbjct 460 AAAATGACTGCATCCAAGTTATTCTCTACTGGAGATGCGGAAATTTCACTTGAATACTTT 519
Query 627 AGCTGCCGAACAAGTCAGGGTCCACTAATCATATCTTGGATAAATTTCTTCAAGATGGCT 686
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 520 AGCTGCCGAACAAGTCAGGGTCCACTGATCGTATCTTGGATAAATTTCTTCAAGATGGCT 579
Query 687 TTGTTTCGCTCCTACAACGGCCAAATCTATGGGCGAGTTTGTGGTGGACCGGTAGTTTCA 746
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TTGTTTCGCTCCAACAACGGCCAAATCTATGGGCGAGTTTGTGGTGGACCGGTAGTTTCA 639
Query 747 ACCCTTGCCAATGCTTTCAGTCCACTATACTTTGAGGTCACAGAAGCAATGGAAGTAATG 806
||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 640 ACCCTTGCCAATGCTTTAAGTCCGCTATACTTTGAGGTCACAGAAGCTATGGAAGTTATG 699
Query 807 GCCACAGAAGAACCCTGCGATGTAGCGTGCAAATTCGGCGATGGGCTTCTTGCTATTGAA 866
||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||
Sbjct 700 GCCACAGAAGAACCCTGCGATGTTGCATGCAAATTTGGTGATGGGCTTCTTGCTATTGAA 759
Query 867 GATTACCCACAAGGCTTCCCTCGACCAGCAAAACATCCTTATCCATTCAACGACAGTGTC 926
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 760 GATTACCCACAAGGCTTCCCTCGACCAGCAAAGCATCCGTATCCATTCAACGACAGTGTG 819
Query 927 GTCATTTACATACGGCACATCGGTCCAGGTGTATGCGTAGGACAGGCATGGCAAGAAGGT 986
||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 820 GTCATATACATACGCCACATCGGTCCAGGTGTATGCGTGGGACAGGCATGGCAAGAAGGT 879
Query 987 AGAGAACTGCAACAAGTTCCTCAACGATTATGCTCGGACATTCTTA-TGGTCAAACAATA 1045
| |||||||||||||||||||||| |||||||||| |||||| ||| |||||||||||||
Sbjct 880 AAAGAACTGCAACAAGTTCCTCAAAGATTATGCTCCGACATT-TTAATGGTCAAACAATA 938
Query 1046 CAGATGAATTAAGA 1059
||||||||||||||
Sbjct 939 CAGATGAATTAAGA 952
Score = 619 bits (335), Expect = 1e-176
Identities = 377/398 (95%), Gaps = 0/398 (0%)
Strand=Plus/Plus
Query 24 GGGAAAATTTTCGTTTGGCCGGAGATGAAGATAGGGGCGGTTCAGGAGAGTTGGCTTATA 83
||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct 1 GGGAAAATTTTCGTTTGGCCGGAGATGAAGATAGGGGCGTTTCGGGATAGTTGGCTTATA 60
Query 84 CGGACTCCGGTACTTAGGCCGGCGGTTCAAGGCTCAATTCGCCGGAATGGAAAGCCGCAG 143
||| ||||||||||| ||||||||||| |||||||||||||||||| ||||| |||||
Sbjct 61 CGGGCTCCGGTACTTTCTCCGGCGGTTCACGGCTCAATTCGCCGGAATCGAAAGTCGCAG 120
Query 144 CTTGAGTTTCCTCTCTCGAACAGGTTGTCTCGTTGTGTGGTTATGGCTGTTCAAGGAGGG 203
|||| ||||| |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 121 CTTGGGTTTCGTCTCTCGAACAGGTTGTCTCGTGGTGTGGTTCTGGCTGTTCAAGGAGGA 180
Query 204 AGAGGATATGAATCTCCATGGGATGAAAAACCCTATGAAACTCTTCCTACTGGTAAAAGG 263
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 181 AGAGGATATGAATCTCCATGGGATGAAAAACCCTTTGAAACTCTTCCCACTGGTAAAAGG 240
Query 264 GTTTATGTTGATGAATCTGATGTTGTGACGTTTCTTGATCCCCCCAAGGAGTTGATTCCA 323
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GTTTACGTTGATGAATCTGATGTTGTGACGTTTCTTGATCCACCCAAGGAGTTGATTCCA 300
Query 324 TTGGACCCTGCTTCATATAACCCGGCTGCTTATCTCTGGAAAAAGATTGAAGACATCCCC 383
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTAGATCCTGCTTCATATAACCCGGCTGCTTATCTCTGGAAAAAGATTGAAGACATCCCC 360
Query 384 GAAGAGAGGCGCCACCATTTGCTGCAATTATTAGAGCC 421
||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAGAGAGGCGCCACCATTTGCTGCAATTATTAGAGCC 398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45747500400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5