BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73100.1
Length=2424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926679 jgi|Araly1|926679|scaffold_202240.1 3221 0.0
> Ahg926679 jgi|Araly1|926679|scaffold_202240.1
Length=2050
Score = 3221 bits (1744), Expect = 0.0
Identities = 1936/2030 (95%), Gaps = 8/2030 (0%)
Strand=Plus/Plus
Query 200 AGGAGTTTAGCAATGCAAGGAGTTCCTGGATTTAATACTGTTCCAAATCCTAACCATTAT 259
|||| |||||||||| ||||||||||||| | ||||||||||| |||||||||||||||
Sbjct 9 AGGATTTTAGCAATGGAAGGAGTTCCTGGGGTCAATACTGTTCCGAATCCTAACCATTAT 68
Query 260 GACAAATCAATAGTGTTAGATATTAAACCGTTGCGAAGTTTGAAACCTGTTTTTCCAAAT 319
||||| ||||||||||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 69 GACAAGTCAATAGTGTTAGATGTAAAACCGCTGCGAAGTTTGAAACCTGTTTTTCCAAAT 128
Query 320 GGTAATCAAGGTCCACCTTTTGTTGGTTGTCCACCTTTTGGTCCTTCCTCATCTGAGTAT 379
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
Sbjct 129 GGTAATCAAGGTCCACCTTTTGTTGGTTGTCCACCTTTTGGTCCTTCTTCATCTGGGTCT 188
Query 380 TCTTCTTTCTTCCCATTTGGAGCACAACAACCAACGCATGATACTCCAGATCTCAACCAA 439
||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 189 TCTCCTTTCTTCCCATTTGGAACACAACAACCAACGCAGGATACTCCAGATCTCAACCAA 248
Query 440 ACTCAGAACACGCCTATTCCATCATTTGTTCCACCTCTTCGATCGTATAGAACACCTACT 499
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 ACTCAGGACACGCCTACTCCATCATTTGTTCCACCTCTTCGATCGTATAGAACACCTACT 308
Query 500 AAAACAAATGGCCCCAGCAGCTCCAGTGGAACTAAAAGAGGTGTTGGTCGACCTAAGGGA 559
|||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||
Sbjct 309 GAAACAAATGGCCCCAGCAGCTCTAGTGGAACTAAACGAGGAGTTGGTCGACCTAAGGGT 368
Query 560 ACTACTAGTGTGAAGAAAAAAGAGAAGAAGACTGTGGCCAATGAGCCTAACTTAGATGTT 619
||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 369 CCTAGTAGTGTGAAGAAAAAAGAGAAGAAGACTGTGGCCAATGAGGCTAATTTAGATGTT 428
Query 620 CAGGTAGTGAAAAAATTCAGTTCAGATTTTGACAGTGGGATCAGTGCAGCAGAGCGAGAA 679
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 429 CAGGTAGTGAAAAGATTCAGTTCAGATTTTGACAGTGGGATCAGTCCAGCAGAGCGAGAA 488
Query 680 GATGGAAATGCGTACTTAGTAAGTAGTGTATTGATGCGTTTTGATGCAGTTAGGAGGCGG 739
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 489 GATGGAAATGCGTACTTAGTAAGTAGCGTATTGATGCGTTATGATGCAGTTAGGAGGCGG 548
Query 740 CTCAGCCAAGTAGAATTCACAAAGTCCGCTACTTCTAAAGCAGCAGGTACTCTGATGAGC 799
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 549 CTCAGCCAAGTAGAATTTGCAAAGGCCGCTACTTCTAAAGCAGCAGGTACTCTGATGAGC 608
Query 800 AATGGGGTGCGGACAAACATGAAGAAGAGAGTTGGGACGGTTCCTGGAATTGAGGTTGGA 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 AATGGGGTGCGGACAAACATGAAGAAGAGAGTTGGGACGGTTCCTGGAATTGAGGTTGGA 668
Query 860 GATATCTTCTTTTCCCGGATAGAGATGTGTTTAGTGGGTCTTCACATGCAGACTATGGCT 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 GATATCTTCTTTTCCCGGATAGAGATGTGTTTAGTGGGTCTTCACATGCAGACTATGGCT 728
Query 920 GGCATTGACTATATAATTAGTAAGGCCGGTTCAGATGAAGAGTCTTTAGCAACTAGCATT 979
|||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||
Sbjct 729 GGCATTGACTATATAACTAGTAAAGCCGGTTCAGATGAAGAGCCTTTAGCAACTAGCATT 788
Query 980 GTTTCATCTGGACGTTATGAAGGTGAAGCTCAGGATCCTGAGTCATTAATTTACAGTGGA 1039
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 789 GTTGCATCTGGACGTTATGAAGGTGAAGCTCAGGATCCTGAGTCATTAATTTATAGTGGA 848
Query 1040 CAAGGCGGCAATGCAGACAAGAACAGACAAGCATCTGATCAGAAGCTTGAAAGGGGTAAT 1099
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 849 CAAGGCGGCAATGCAGACAAGAACGGACAAGCATCTGATCAGAAGCTTGAAAGGGGTAAT 908
Query 1100 CTAGCATTAGAGAATAGCTTGAGGAAGGGAAATGGAGTAAGAGTCGTAAGAGGGGAGGAG 1159
|||||| ||||||| |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 909 CTAGCACTAGAGAAAAGCTTGAGGAAGGGTAATGGAGTAAGAGTCATAAGAGGGGAGGAA 968
Query 1160 GATGCAGCTTCGAAAACAGGAAAGATCTATATCTATGATGGGCTTTATTCGATCTCAGAG 1219
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 GATGCAGCTACCAAAACAGGAAAGATCTATATCTATGATGGGCTTTATTCGATCTCAGAG 1028
Query 1220 TCATGGGTAGAGAAAGGGAAATCTGGTTGCAACACCTTTAAATATAAATTGGTGAGACAA 1279
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1029 TCATGGGTAGAGAAAGGGAAATCTGGTTGCAACACCTTTAAATATAAATTGGTGAGACTA 1088
Query 1280 CCTGGTCAACCACCTGCGTTTGGCTTTTGGAAATCTGTTCAGAAGTGGAAGGAAGGTTTG 1339
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1089 CCTGGTCAACCACCTGCTTTTGGCGTTTGGAAATCTGTTCAGAAGTGGAAGGAAGGTTTG 1148
Query 1340 ACTACAAGACCAGGCCTGATCCTTCCAGATCTCACCTCAGGAGCTGAAAGTAAACCTGTT 1399
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1149 ACTACAAGACCAGGCCTGATCCTTCCAGATATCACTTCAGGAGCTGAAAGTAAACCTGTT 1208
Query 1400 TCACTTGTGAATGATGTTGATGAGGATAAAGGGCCTGCTTATTTTACCTATACCTCCTCT 1459
||||||||||| ||| |||||||||| || |||||||||||||||||||||| |||||||
Sbjct 1209 TCACTTGTGAACGATATTGATGAGGAGAAGGGGCCTGCTTATTTTACCTATATCTCCTCT 1268
Query 1460 CTGAAATACTCAGAGACCTTTAAACTAACTCAGCCTGTAATTGGTTGTTCCTGCAGTGGT 1519
|||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1269 CTGAAATACTCAGATTCCTTTAAACTAACTCAGCCCGCAATTGGTTGTTCCTGCAGTGGC 1328
Query 1520 TCATGTTCACCAGGAAATCATAACTGCTCTTGTATCAGAAAAAATGATGGTGATCTCCCT 1579
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 TCATGTGCACCAGGAAATCTTAACTGCTCTTGTATCAGAAAAAATGATGGTGATCTCCCT 1388
Query 1580 TACCTTAATGGGGTTATACTCGTTTCCCGGAGGCCTG-TGATATATGAATGTGGCCCAAC 1638
||||||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||
Sbjct 1389 TACCTTAATGGGGTTATGCTCGTTTCCCGGAGGCC-GATTATATATGAATGTGGCCCAAC 1447
Query 1639 GTGTCCTTGTCATGCCAGTTGCAAAAACAGAGTGATTCAGACAGGACTGAAATCCCGCCT 1698
|||||| |||||||||||||||||||||| |||||||||||||||||||||||| || ||
Sbjct 1448 GTGTCCATGTCATGCCAGTTGCAAAAACAAAGTGATTCAGACAGGACTGAAATCGCGTCT 1507
Query 1699 GGAAGTGTTTAAGACAAGAAACCGCGGTTGGGGTTTACGTTCGTGGGATTCCTTACGTGC 1758
|||||||||||||||| |||| |||||||||||||||||||| ||||||||| |||||||
Sbjct 1508 GGAAGTGTTTAAGACAGGAAATCGCGGTTGGGGTTTACGTTCATGGGATTCCATACGTGC 1567
Query 1759 TGGTTCTTTCATATGTGAATATGCTGGTGAAGTCAAAGACAATGGCAACCTTAGAGGAAA 1818
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1568 TGGTTCTTTCATATGTGAATATGCTGGTGAAGTCAAAGACAAAGGCAACCTTAGAGGAAA 1627
Query 1819 CCAAGAAGAGGATGCGTATGTCTTTGACACATCGCGTGTTTTTAACTCGTTTAAGTGGAA 1878
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1628 CCAAGAAGAGGATGAGTATGTCTTCGACACATCGCGTGTTTTTAACTCGTTTAAGTGGAA 1687
Query 1879 TTATGAGCCTGAGCTTGTAGATGAAGACCCTTCA-ACTGAAGTTCCCGAAGAGTTTAATC 1937
|||||||||||| ||||||||||||||||||||| | |||||| ||||| ||||||||||
Sbjct 1688 TTATGAGCCTGAACTTGTAGATGAAGACCCTTCAGA-TGAAGTGCCCGAGGAGTTTAATC 1746
Query 1938 TCCCATCACCACTCCTAATCAGTGCCAAGAAATTTGGCAATGTAGCTCGGTTCATGAACC 1997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1747 TCCCATCACCACTCCTAATCAGTGCCAAGAAATTTGGCAATGTAGCTCGGTTCATGAACC 1806
Query 1998 ATAGTTGCTCTCCTAACGTTTTTTGGCAGCCAGTTATTCGTGAAGGAAACGGTGAATCAG 2057
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1807 ATAGTTGCTCTCCCAACGTTTTTTGGCAGCCAGTTATTTGTGAAGGAAACGGTGAATCGG 1866
Query 2058 TTATCCACATTGCTTTCTTTGCCATGCGTCATATCCCTCCTATGGCAGAATTGACATATG 2117
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1867 TTATCCATATTGCTTTCTTTGCCATGCGTCACATCCCTCCTATGGCAGAATTGACATATG 1926
Query 2118 ATTATGG-GATTTCTCCTACATCCGAGGCCAGAGATGAG-AGCCTTTTACATGGACAGAG 2175
||||||| | |||||||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct 1927 ATTATGGAG-TTTCTCCTACATCCGAGGCCAGGGATG-GTAGCCTTTTACATGGACAGAG 1984
Query 2176 GACATGTCTCTGTGGATCTGAGCAATGTCGTGGTTCATTCGGATGATCTG 2225
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1985 GACATGTCTCTGTGGATCTGAGCAATGTCGTGGTTCATTCGGATGATCTG 2034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91340407510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5