BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G73120.1

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476442 jgi|Araly1|476442|fgenesh2_kg.2__1572__AT1G73120.1         573    5e-163


> Ahg476442 jgi|Araly1|476442|fgenesh2_kg.2__1572__AT1G73120.1
Length=511

 Score =  573 bits (310),  Expect = 5e-163
 Identities = 375/406 (92%), Gaps = 5/406 (1%)
 Strand=Plus/Plus

Query  5    ATATATTTACCTACATCAGATTCTTCAT----ACACATTGTAATCAATAGACCATAGAGA  60
            |||||||| |||||||||||||||||||    ||||||||||||||| ||| ||||||||
Sbjct  1    ATATATTTGCCTACATCAGATTCTTCATACACACACATTGTAATCAAGAGATCATAGAGA  60

Query  61   TTTACATGGCGACTTCTACCTTCTCTTCTCGTGGGGCACAAACCATGAACACCATGTTCG  120
            || |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct  61   TTGACATGGCGACTTCTACCTTCTCGTCTCGTGGAGCACAAACCATGAACACCATGTTCG  120

Query  121  TCAAGCCGATGCTTAGGAAATCAATTCACAAGAAGAGTGCCTCGCATGATATAGTGAGGG  180
            ||||||||||||||||||| || ||||||||||||||||| ||||| || ||||| ||||
Sbjct  121  TCAAGCCGATGCTTAGGAAGTCGATTCACAAGAAGAGTGCGTCGCACGACATAGTCAGGG  180

Query  181  ATACGGTGAAGACTGAGGGCTCTAGCTCCGGAGAGGAGGTGAAGACGATGAGAGGCTTCT  240
            | || | |||||| ||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct  181  AGACAGCGAAGACGGAGGGTTCAAGCGCCGGAGAGGAGGTGAAGACGATGAGAGGCTTCT  240

Query  241  ACGGCGCCGGAGAAACGTCGTCGCCGGCGAGTAGTTGGGTGCCACATGAAGGTACGGGAA  300
            ||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct  241  ACGGCGCCGGAGAGACGTCGTCGCCGGCGAGTAGTTGGGTGCCACATGATGGAACGGGAA  300

Query  301  TATACTATCCAAAGGGACAAGAGAAAGTGATGCAAGATGTGCCTCCTCCTCCAGCTGGCA  360
            |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct  301  TATACTATCCAAAGGGGCAAGAGAAAGTAATGCAAGATGTGCCTCCTCCTCCAGCTGGCA  360

Query  361  GCCACGCGGACGAGCTCGTTAATTGGTTCTCTTGATCCATTAGTCT  406
            ||||||||||||| |||||||| |||||||||||||||||| ||||
Sbjct  361  GCCACGCGGACGACCTCGTTAACTGGTTCTCTTGATCCATT-GTCT  405


 Score =  128 bits (69),  Expect = 4e-29
 Identities = 99/113 (88%), Gaps = 3/113 (3%)
 Strand=Plus/Plus

Query  460  ATTGTCTATTGTTCTAATGGG-AAACCA-TA-AAATATATGTGTAATTAAGTGGAAATAT  516
            ||||||||||||| | ||||| ||| || || |||||||||||||||||||| || ||  
Sbjct  399  ATTGTCTATTGTTGTGATGGGTAAAACATTACAAATATATGTGTAATTAAGTTGATATGC  458

Query  517  ATTGTCATATAACCAATGATAATGAATAATTAATGATGATTACAAAATGAGTT  569
            | ||||| ||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct  459  AATGTCACATAGCCAATGATAATGAATAATTAATGATGATTATAAAATGAGTT  511



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20985573950


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5