BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73130.1
Length=2532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339520 jgi|Araly1|339520|fgenesh1_pg.C_scaffold_2001619 706 0.0
Ahg312743 jgi|Araly1|312743|fgenesh1_pm.C_scaffold_1001523 132 1e-29
> Ahg339520 jgi|Araly1|339520|fgenesh1_pg.C_scaffold_2001619
Length=1863
Score = 706 bits (382), Expect = 0.0
Identities = 515/577 (89%), Gaps = 18/577 (3%)
Strand=Plus/Plus
Query 433 ATGGGACCAGAATCTAAAGGACGAGCATGGTTTAGTAAAATCTACAACAAGTTGGAAAAT 492
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
Sbjct 1 ATGGGACCAGAATCTAAAGGAAGAGCATGGTTTGGTAAAATCTACAACAAGTTGGAAACT 60
Query 493 TTGCTTGTTGAGGTTGACTCTTTCACTTCTCAGAGCACGCTTTGTTTGAAATCAAGTGAA 552
| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 ATACTTGTTGAGGTTGATTCTTTCACTTCTCAGACCACGCTTTGTTTGAAATCAAGTGAA 120
Query 553 CCTCCGAGATTCGAATATGTTAGAGGTGAATCAAAGGAAGTTGCAGAGGACCATTCTT-- 610
|||||| ||||||||| |||||||||||| ||||||||||| |||||||||| |||||
Sbjct 121 CCTCCGGGATTCGAATCTGTTAGAGGTGACTCAAAGGAAGTCGCAGAGGACCGTTCTTAC 180
Query 611 ----C-TA-A-TGTACAAGGACGTCATGATCGTGTTGCTTCACCGCGAAGTGAAAGTCCT 663
| || | ||| ||||||| |||| ||||||||| ||||||| | | ||||||||
Sbjct 181 GGAACTTATAGTGTGCAAGGACATCATAATCGTGTTGATTCACCGAGTTTTAAAAGTCCT 240
Query 664 TCTGATCCACCGTCACATCAGAACTTTGACATTCCAGGACATGTTTTGGTTGAGAAACGA 723
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 241 TTTGATCCACCGTCACATCAGAACTTTGACATTCCAGGACATGTTCTGGTTGAGAAGCGA 300
Query 724 GTTCAAGGCGATATTTTGAAAGAGAATGTAGTTCAAAGAGATAGTTTTGAGGATAATTCA 783
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GTTCAAGGCGATATTTTGAAGGAGAATGTAGTTCAAAGAGATAGTTTTGAGGAGAATTCA 360
Query 784 TCAGCTTCCTC-TTCGTCTGATGGAGAAATAGAATCTACATCTCCACTGCAT-GAAGAGT 841
||||| |||| || |||| | ||||||| ||| |||||||||||||||| | |||||||
Sbjct 361 TCAGCAGCCTCCTT-GTCTAACGGAGAAACAGACTCTACATCTCCACTGC-TCGAAGAGT 418
Query 842 ACTGTGATGCTTATATGACATCAACCACTACTCTTAGTGATGAAGAACAATT-AGTTTCT 900
||||||||||| |||||||||||| ||||| |||| ||| |||||||||||| | |||||
Sbjct 419 ACTGTGATGCTAATATGACATCAATCACTAGTCTTGGTGCTGAAGAACAATTTA-TTTCT 477
Query 901 GATGAAGA-G--TCTCAGATATTTCCTGATGGAGAAAGACTCTCTACATCCCCATTGCTT 957
|||||||| | |||||||| || ||||||| ||||| |||||||||||| |||||||||
Sbjct 478 GATGAAGAAGAGTCTCAGATCTTACCTGATGAAGAAATACTCTCTACATCTCCATTGCTT 537
Query 958 GAAGAGTATCATGATGCTAATCTGACATCAGCCGCTA 994
|||||||||||||||||||||||||||||| || |||
Sbjct 538 GAAGAGTATCATGATGCTAATCTGACATCACCCACTA 574
Score = 497 bits (269), Expect = 1e-139
Identities = 400/458 (87%), Gaps = 29/458 (6%)
Strand=Plus/Plus
Query 1938 AAACATGAGATCCTCTAATGCGGATAATCCAGATGATGTGATTAATAATTGCAAATCTGA 1997
||||||||||||||||||||| ||||| ||||||||||||| | |||| ||||||||||
Sbjct 1413 AAACATGAGATCCTCTAATGCAGATAACCCAGATGATGTGA-T--TAATGGCAAATCTGA 1469
Query 1998 CGTTACTCCATTGGATACCAA-G----G-A---CATTGCATTTCAAAAAGAACCCTCGTA 2048
||||||||||| |||||||| | | | ||| | |||||||||||| ||||||||
Sbjct 1470 TGTTACTCCATTAGATACCAATGCATTGTATGGCATAGAATTTCAAAAAGACCCCTCGTA 1529
Query 2049 TG-T--T-A-A-TG-AC---A--CAGTGCGTGTTAGGATCATGGCTGAACTGTGCGGCAT 2096
|| | | | | || | | ||||||||| ||||||||| ||||| |||||||||||
Sbjct 1530 TGTTGATGACAGTGTGCTTTATGCAGTGCGTGCTAGGATCATTGCTGAGCTGTGCGGCAT 1589
Query 2097 GGAATCTCGAGAAGACCCCTTGTATGTTGAGGACAGTGAGCTTTATGCCATTCATCTTAG 2156
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1590 GGAATCTCGAGAAGACCCCT---ATGTTGAGGACAGTGTGCTTTATGCCATTCATCTTAG 1646
Query 2157 GACCAAGAAACTCAGATCCTTCAAGAGAAAGGTCTTGGACGTTTTAACTTCAAAGAGAAG 2216
|||| ||||||||||||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 1647 GACCGAGAAACTCAGATCCTTCAAGAGAAAAATCTTGGATGCTTTAACTTCAAAGAGAAG 1706
Query 2217 AAGAGAGAAGGAATATGAGCAGCTTCCGATTTGGTACGGAGATGCGGGA-ATGGGTTCTG 2275
||||||||| || |||||||||||||| ||||||| ||||||||||| | ||||||||||
Sbjct 1707 AAGAGAGAAAGAGTATGAGCAGCTTCCAATTTGGTTCGGAGATGCGG-ATATGGGTTCTG 1765
Query 2276 ATCTGGCCACTAAGGAAGAGTCTCAACAAGTGGAAGCCACAGACTCCAAAAGCTCACTTT 2335
||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||
Sbjct 1766 ATCTGGCCACTAAGGAAGACTCTAAACAAGTGGAAGCCATAGACTCCAAAAGCTCACAGC 1825
Query 2336 TACTTGAATCAGAAGATTCCCAGTGGGAGCTATTGTGA 2373
||||||||||||| ||||||||||||||||||||||||
Sbjct 1826 TACTTGAATCAGACGATTCCCAGTGGGAGCTATTGTGA 1863
Score = 344 bits (186), Expect = 2e-93
Identities = 232/254 (91%), Gaps = 4/254 (2%)
Strand=Plus/Plus
Query 1568 CTGAAGAAGAAATACTCTCTA-AGTCTCCATTGCTCGAAGAGCATTGTGATGCT-AATCT 1625
|||| | ||||||| |||||| | ||| ||||| | |||||| | ||||||| | ||| |
Sbjct 1073 CTGATGGAGAAATATTCTCTACA-TCTTCATTGTTTGAAGAGTACTGTGATG-TGAATTT 1130
Query 1626 GACATCAGACACTACTCTTGGTGATGAAAAACCAATAATTACGGATGATGAGTCTTGGAT 1685
|||| ||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1131 GACACCAGCCACTACTCTTGGTGATGAAGAACCAATAATTACCGATGATGAGTCTTGGAT 1190
Query 1686 CAGTAACAGTTTAACCTCTCAGAAATCTTCTGCTGGAAACTCTTGGGTTTTTTCAGGCGA 1745
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1191 CACTAACAGTTTAACCTCTCAGAAATCTTCTGCTGGAAACTCTTGGGTTGTTTCAGGCGA 1250
Query 1746 GGATAGTGTAGAAGAAGTTAAAGTTAAATCGTGCAGAGATGTTGTTTCCACAGAATCTCA 1805
||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1251 GGAAAATGTAGAAGAAGTTAAAGTTAAATCGTGCAGAGATGTTGTTTCCACAGAACCTCA 1310
Query 1806 ATCTACTCAAAGTT 1819
||||||||||||||
Sbjct 1311 ATCTACTCAAAGTT 1324
Score = 195 bits (105), Expect = 2e-48
Identities = 177/211 (84%), Gaps = 8/211 (4%)
Strand=Plus/Plus
Query 1569 TGAAGAAGAAATACTCTCTA-AGTCT-CCATTGCTCGAAGAGCA-TTGTGATGCTAATCT 1625
||| |||||||||||||| | | | | | ||||| |||||| | || ||||||||||||
Sbjct 858 TGATGAAGAAATACTCTCCACA-T-TGCGGTTGCTTGAAGAG-AGTTATGATGCTAATCT 914
Query 1626 GACATCAGACACTACTCTTGGTGATGAAAAACCAATAATTA-CGGATGATGAGTCTTGGA 1684
|||||||||||||||||||||||||||| |||||||||||| || ||| ||||||| ||
Sbjct 915 GACATCAGACACTACTCTTGGTGATGAAGAACCAATAATTAACG-ATGCTGAGTCTCAGA 973
Query 1685 TCAGTAACAGTTTAACCTCTCAGAAATCTTCTGCTGGAAACTCTTGGGTTTTTTCAGGCG 1744
||| ||||| ||||||| ||||||| | ||||||||||| ||||| |||||| ||| ||
Sbjct 974 TCACTAACACTTTAACCACTCAGAAGTTTTCTGCTGGAAGCTCTTCTGTTTTTCCAGACG 1033
Query 1745 AGGATAGTGTAGAAGAAGTTAAAGTTAAATC 1775
||| |||||| |||| |||| |||| ||||
Sbjct 1034 GGGAAAGTGTACAAGACGTTAGAGTTGAATC 1064
> Ahg312743 jgi|Araly1|312743|fgenesh1_pm.C_scaffold_1001523
Length=2937
Score = 132 bits (71), Expect = 1e-29
Identities = 146/182 (80%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 2103 TCGAGAAGACCCCT-TGTATGTTGAGGACAGTGAGCTTTATGCCATTCATCTTAGGACCA 2161
|||||||||||||| | || |||| |||| | ||| ||||| | | | ||||| |
Sbjct 2661 TCGAGAAGACCCCTCAG-ATTTTGACGACAATTTGCTATATGCAACGCGTGACAGGACTA 2719
Query 2162 AGAAACTCAGATCCTTCAAGAGAAAGGTCTTGGACGTTTTAACTTC-AAAGAGAAGAAGA 2220
|| |||||||||| |||||||||||||| |||| | | ||||||| ||| |||||||||
Sbjct 2720 AGCAACTCAGATCATTCAAGAGAAAGGTAATGGATGCTATAACTTCGAAA-AGAAGAAGA 2778
Query 2221 GAGAAGGAATATGAGCAGCTTCCGATTTGGTACGGAGATGCGGGA-ATGGGTTCTGATCT 2279
||||||||||||||||||||| | || |||| ||||| || | | ||||||| ||||||
Sbjct 2779 GAGAAGGAATATGAGCAGCTTTCTATATGGTTTGGAGACGCAG-ACATGGGTTGTGATCT 2837
Query 2280 GG 2281
||
Sbjct 2838 GG 2839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95454153970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5