BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G73130.1 Length=2532 Score E Sequences producing significant alignments: (Bits) Value Ahg339520 jgi|Araly1|339520|fgenesh1_pg.C_scaffold_2001619 706 0.0 Ahg312743 jgi|Araly1|312743|fgenesh1_pm.C_scaffold_1001523 132 1e-29 > Ahg339520 jgi|Araly1|339520|fgenesh1_pg.C_scaffold_2001619 Length=1863 Score = 706 bits (382), Expect = 0.0 Identities = 515/577 (89%), Gaps = 18/577 (3%) Strand=Plus/Plus Query 433 ATGGGACCAGAATCTAAAGGACGAGCATGGTTTAGTAAAATCTACAACAAGTTGGAAAAT 492 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| | Sbjct 1 ATGGGACCAGAATCTAAAGGAAGAGCATGGTTTGGTAAAATCTACAACAAGTTGGAAACT 60 Query 493 TTGCTTGTTGAGGTTGACTCTTTCACTTCTCAGAGCACGCTTTGTTTGAAATCAAGTGAA 552 | |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 ATACTTGTTGAGGTTGATTCTTTCACTTCTCAGACCACGCTTTGTTTGAAATCAAGTGAA 120 Query 553 CCTCCGAGATTCGAATATGTTAGAGGTGAATCAAAGGAAGTTGCAGAGGACCATTCTT-- 610 |||||| ||||||||| |||||||||||| ||||||||||| |||||||||| ||||| Sbjct 121 CCTCCGGGATTCGAATCTGTTAGAGGTGACTCAAAGGAAGTCGCAGAGGACCGTTCTTAC 180 Query 611 ----C-TA-A-TGTACAAGGACGTCATGATCGTGTTGCTTCACCGCGAAGTGAAAGTCCT 663 | || | ||| ||||||| |||| ||||||||| ||||||| | | |||||||| Sbjct 181 GGAACTTATAGTGTGCAAGGACATCATAATCGTGTTGATTCACCGAGTTTTAAAAGTCCT 240 Query 664 TCTGATCCACCGTCACATCAGAACTTTGACATTCCAGGACATGTTTTGGTTGAGAAACGA 723 | ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 241 TTTGATCCACCGTCACATCAGAACTTTGACATTCCAGGACATGTTCTGGTTGAGAAGCGA 300 Query 724 GTTCAAGGCGATATTTTGAAAGAGAATGTAGTTCAAAGAGATAGTTTTGAGGATAATTCA 783 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 301 GTTCAAGGCGATATTTTGAAGGAGAATGTAGTTCAAAGAGATAGTTTTGAGGAGAATTCA 360 Query 784 TCAGCTTCCTC-TTCGTCTGATGGAGAAATAGAATCTACATCTCCACTGCAT-GAAGAGT 841 ||||| |||| || |||| | ||||||| ||| |||||||||||||||| | ||||||| Sbjct 361 TCAGCAGCCTCCTT-GTCTAACGGAGAAACAGACTCTACATCTCCACTGC-TCGAAGAGT 418 Query 842 ACTGTGATGCTTATATGACATCAACCACTACTCTTAGTGATGAAGAACAATT-AGTTTCT 900 ||||||||||| |||||||||||| ||||| |||| ||| |||||||||||| | ||||| Sbjct 419 ACTGTGATGCTAATATGACATCAATCACTAGTCTTGGTGCTGAAGAACAATTTA-TTTCT 477 Query 901 GATGAAGA-G--TCTCAGATATTTCCTGATGGAGAAAGACTCTCTACATCCCCATTGCTT 957 |||||||| | |||||||| || ||||||| ||||| |||||||||||| ||||||||| Sbjct 478 GATGAAGAAGAGTCTCAGATCTTACCTGATGAAGAAATACTCTCTACATCTCCATTGCTT 537 Query 958 GAAGAGTATCATGATGCTAATCTGACATCAGCCGCTA 994 |||||||||||||||||||||||||||||| || ||| Sbjct 538 GAAGAGTATCATGATGCTAATCTGACATCACCCACTA 574 Score = 497 bits (269), Expect = 1e-139 Identities = 400/458 (87%), Gaps = 29/458 (6%) Strand=Plus/Plus Query 1938 AAACATGAGATCCTCTAATGCGGATAATCCAGATGATGTGATTAATAATTGCAAATCTGA 1997 ||||||||||||||||||||| ||||| ||||||||||||| | |||| |||||||||| Sbjct 1413 AAACATGAGATCCTCTAATGCAGATAACCCAGATGATGTGA-T--TAATGGCAAATCTGA 1469 Query 1998 CGTTACTCCATTGGATACCAA-G----G-A---CATTGCATTTCAAAAAGAACCCTCGTA 2048 ||||||||||| |||||||| | | | ||| | |||||||||||| |||||||| Sbjct 1470 TGTTACTCCATTAGATACCAATGCATTGTATGGCATAGAATTTCAAAAAGACCCCTCGTA 1529 Query 2049 TG-T--T-A-A-TG-AC---A--CAGTGCGTGTTAGGATCATGGCTGAACTGTGCGGCAT 2096 || | | | | || | | ||||||||| ||||||||| ||||| ||||||||||| Sbjct 1530 TGTTGATGACAGTGTGCTTTATGCAGTGCGTGCTAGGATCATTGCTGAGCTGTGCGGCAT 1589 Query 2097 GGAATCTCGAGAAGACCCCTTGTATGTTGAGGACAGTGAGCTTTATGCCATTCATCTTAG 2156 |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 1590 GGAATCTCGAGAAGACCCCT---ATGTTGAGGACAGTGTGCTTTATGCCATTCATCTTAG 1646 Query 2157 GACCAAGAAACTCAGATCCTTCAAGAGAAAGGTCTTGGACGTTTTAACTTCAAAGAGAAG 2216 |||| ||||||||||||||||||||||||| ||||||| | |||||||||||||||||| Sbjct 1647 GACCGAGAAACTCAGATCCTTCAAGAGAAAAATCTTGGATGCTTTAACTTCAAAGAGAAG 1706 Query 2217 AAGAGAGAAGGAATATGAGCAGCTTCCGATTTGGTACGGAGATGCGGGA-ATGGGTTCTG 2275 ||||||||| || |||||||||||||| ||||||| ||||||||||| | |||||||||| Sbjct 1707 AAGAGAGAAAGAGTATGAGCAGCTTCCAATTTGGTTCGGAGATGCGG-ATATGGGTTCTG 1765 Query 2276 ATCTGGCCACTAAGGAAGAGTCTCAACAAGTGGAAGCCACAGACTCCAAAAGCTCACTTT 2335 ||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 1766 ATCTGGCCACTAAGGAAGACTCTAAACAAGTGGAAGCCATAGACTCCAAAAGCTCACAGC 1825 Query 2336 TACTTGAATCAGAAGATTCCCAGTGGGAGCTATTGTGA 2373 ||||||||||||| |||||||||||||||||||||||| Sbjct 1826 TACTTGAATCAGACGATTCCCAGTGGGAGCTATTGTGA 1863 Score = 344 bits (186), Expect = 2e-93 Identities = 232/254 (91%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 1568 CTGAAGAAGAAATACTCTCTA-AGTCTCCATTGCTCGAAGAGCATTGTGATGCT-AATCT 1625 |||| | ||||||| |||||| | ||| ||||| | |||||| | ||||||| | ||| | Sbjct 1073 CTGATGGAGAAATATTCTCTACA-TCTTCATTGTTTGAAGAGTACTGTGATG-TGAATTT 1130 Query 1626 GACATCAGACACTACTCTTGGTGATGAAAAACCAATAATTACGGATGATGAGTCTTGGAT 1685 |||| ||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 1131 GACACCAGCCACTACTCTTGGTGATGAAGAACCAATAATTACCGATGATGAGTCTTGGAT 1190 Query 1686 CAGTAACAGTTTAACCTCTCAGAAATCTTCTGCTGGAAACTCTTGGGTTTTTTCAGGCGA 1745 || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1191 CACTAACAGTTTAACCTCTCAGAAATCTTCTGCTGGAAACTCTTGGGTTGTTTCAGGCGA 1250 Query 1746 GGATAGTGTAGAAGAAGTTAAAGTTAAATCGTGCAGAGATGTTGTTTCCACAGAATCTCA 1805 ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1251 GGAAAATGTAGAAGAAGTTAAAGTTAAATCGTGCAGAGATGTTGTTTCCACAGAACCTCA 1310 Query 1806 ATCTACTCAAAGTT 1819 |||||||||||||| Sbjct 1311 ATCTACTCAAAGTT 1324 Score = 195 bits (105), Expect = 2e-48 Identities = 177/211 (84%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 1569 TGAAGAAGAAATACTCTCTA-AGTCT-CCATTGCTCGAAGAGCA-TTGTGATGCTAATCT 1625 ||| |||||||||||||| | | | | | ||||| |||||| | || |||||||||||| Sbjct 858 TGATGAAGAAATACTCTCCACA-T-TGCGGTTGCTTGAAGAG-AGTTATGATGCTAATCT 914 Query 1626 GACATCAGACACTACTCTTGGTGATGAAAAACCAATAATTA-CGGATGATGAGTCTTGGA 1684 |||||||||||||||||||||||||||| |||||||||||| || ||| ||||||| || Sbjct 915 GACATCAGACACTACTCTTGGTGATGAAGAACCAATAATTAACG-ATGCTGAGTCTCAGA 973 Query 1685 TCAGTAACAGTTTAACCTCTCAGAAATCTTCTGCTGGAAACTCTTGGGTTTTTTCAGGCG 1744 ||| ||||| ||||||| ||||||| | ||||||||||| ||||| |||||| ||| || Sbjct 974 TCACTAACACTTTAACCACTCAGAAGTTTTCTGCTGGAAGCTCTTCTGTTTTTCCAGACG 1033 Query 1745 AGGATAGTGTAGAAGAAGTTAAAGTTAAATC 1775 ||| |||||| |||| |||| |||| |||| Sbjct 1034 GGGAAAGTGTACAAGACGTTAGAGTTGAATC 1064 > Ahg312743 jgi|Araly1|312743|fgenesh1_pm.C_scaffold_1001523 Length=2937 Score = 132 bits (71), Expect = 1e-29 Identities = 146/182 (80%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 2103 TCGAGAAGACCCCT-TGTATGTTGAGGACAGTGAGCTTTATGCCATTCATCTTAGGACCA 2161 |||||||||||||| | || |||| |||| | ||| ||||| | | | ||||| | Sbjct 2661 TCGAGAAGACCCCTCAG-ATTTTGACGACAATTTGCTATATGCAACGCGTGACAGGACTA 2719 Query 2162 AGAAACTCAGATCCTTCAAGAGAAAGGTCTTGGACGTTTTAACTTC-AAAGAGAAGAAGA 2220 || |||||||||| |||||||||||||| |||| | | ||||||| ||| ||||||||| Sbjct 2720 AGCAACTCAGATCATTCAAGAGAAAGGTAATGGATGCTATAACTTCGAAA-AGAAGAAGA 2778 Query 2221 GAGAAGGAATATGAGCAGCTTCCGATTTGGTACGGAGATGCGGGA-ATGGGTTCTGATCT 2279 ||||||||||||||||||||| | || |||| ||||| || | | ||||||| |||||| Sbjct 2779 GAGAAGGAATATGAGCAGCTTTCTATATGGTTTGGAGACGCAG-ACATGGGTTGTGATCT 2837 Query 2280 GG 2281 || Sbjct 2838 GG 2839 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95454153970 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5