BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73140.1
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316264 jgi|Araly1|316264|fgenesh1_pm.C_scaffold_2001297 1989 0.0
> Ahg316264 jgi|Araly1|316264|fgenesh1_pm.C_scaffold_2001297
Length=1242
Score = 1989 bits (1077), Expect = 0.0
Identities = 1189/1244 (96%), Gaps = 4/1244 (0%)
Strand=Plus/Plus
Query 77 ATGTCTATACAAACAACTGCAGATTCGA-GGATGATTCAATCCATCTTCCAAGTTGTGCT 135
||||| |||||||| |||||| ||| | | |||||||| |||||||| |||||| ||||
Sbjct 1 ATGTCGATACAAACTTCTGCAGCTTC-ACGAATGATTCACTCCATCTTTCAAGTTCTGCT 59
Query 136 TGTTAGTCTTCTAGTTCTAGGATCCGTGAGATGGATACTTGATGAACTCAAGAGCAAAGA 195
|||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 60 TGTTAGTCTTCTAGTTCTAGGATCCGCCAGATGGATCCTTGATGAACTCAAAAGCAAAGA 119
Query 196 AAGTCGAATA-TCCAAACTATATGGTTTCAGACAGAAAGAGGCAGTGTTTGTCACTAAAG 254
|||||||||| ||| |||||||| |||||||||||||||||||||||||||| || ||||
Sbjct 120 AAGTCGAATATTCC-AACTATATCGTTTCAGACAGAAAGAGGCAGTGTTTGTAACCAAAG 178
Query 255 AGGATCAGCTTGATGAGAGCTGCAATGTCTTTGAAGGACAATGGGTTTGGGACAATGTCT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 179 AGGATCAGCTTGATGAGAGCTGCAATGTCTTTGAAGGACAATGGGTTTGGGACAACGTCT 238
Query 315 CTTATCCTCTTTATACAGAGAAGAGCTGTCCTTATTTAGTCAAACAAACAACATGTCAAC 374
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 239 CTTACCCTCTTTATACTGAGAAGAGCTGTCCTTACTTAGTCAAACAAACAACATGTCAAC 298
Query 375 GAAATGGACGGCCTGATTCTTATTACCAGAACTGGAGATGGAAACCGAGCTCATGCGACT 434
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 299 GAAATGGACGGCCTGATTCTTATTACCAGAGCTGGAGATGGAAACCGAGCTCATGCGACT 358
Query 435 TGCCAAGGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTTCA 494
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGCCCAGGTTCAATGCTCTGAAACTGTTGGACGTGTTGAGAAACAAAAGACTAATGTTCA 418
Query 495 TAGGAGACTCAGTGCAGAGAAGCACGTTCGAGTCAATGGTCTGTATGGTGCAATCAGTAA 554
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 419 TAGGAGACTCAGTGCAGAGAAGCACGTTCGAGTCAATGGTCTGTATGGTACAATCAGTTA 478
Query 555 TTCCTGAGAAGAAGAAGTCCTTCCATAGGATTCCTCCTATGAAGATCTTCAAAGCTGAGG 614
||||||| |||||||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 479 TTCCTGACAAGAAGAAGTCCTTTCACAGGATTCCTCCTATGAAGATCTTCAAAGCTCAGG 538
Query 615 AATACAATGCATCCATCGAGTATTACTGGGCACCTTTCATCGTGGAATCGATTTCAGATC 674
||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 539 AATACAATGTATCCATCGAGTATTACTGGGCACCTTTTATCGTGGAATCAATTTCAGATC 598
Query 675 ATGCAACTAATCATACAGTACACAAAAGGTTGGTTAAGCTCGACGCCATTGAAAAACATA 734
||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 599 ATGCAACTAATCATACAGTTCACAAAAGGTTGGTTAACCTTGACGCCATTGAAAAACATA 658
Query 735 GCAAGAGCTGGGAAGGGGTTGATGTTCTAGTCTTTGAGAGCTATGTATGGTGGATGCATC 794
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GCAAGAGCTGGGAAGGCGTTGATGTTCTAGTCTTTGAGAGCTATGTATGGTGGATGCATC 718
Query 795 AACCTAAGATCAATGCAACGTATGGAGATACCAGTGAAGTCCGAGAGTATAATGTGACGA 854
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 719 AACCTAAGATCAATGCAACATATGGAGATACTAGTGAAGTCCGAGAGTATAATGTGACGA 778
Query 855 CTGCTTATAAAATGGCGTTAGAAACATGGGCCAAGTGGTTTAAGACGAAGATCAATTCCG 914
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 779 CTGCTTATAAAATGGCGTTAGAAACATGGGCCAAGTGGTTTGAGACGAAGATCAATCCCG 838
Query 915 AGAAGCAAAAAGTTTTCTTCACGAGTATGTCTCCGACTCATCTATGGAGCTGGGAGTGGA 974
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 839 AGAAGCAAAGAGTTTTCTTCACAAGTATGTCTCCGACTCATCTATGGAGCTGGGAGTGGA 898
Query 975 ATCCAGGGAGCGATGGAACCTGTTATGATGAGTTATATCCAATAGACAAAAGATCATATT 1034
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 899 ATCCAGGGAGCGATGGAACCTGTTATGATGAGTTATATCCAATAGACAAAATATCATATT 958
Query 1035 GGGGTACAGGATCAAATCAAGAAATCATGAAGATTGTTGGTGATGTTCTAAGCAGAGTTG 1094
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 959 GGGGTACAGGATCAAATCAAGAAATCATGAAGATTGTTGGTGATGTTCTAAGCAGAGTCG 1018
Query 1095 GAGAAAATGTCACGTTCCTGAACATTACGCAACTGTCGGAATACAGGAAAGATGGACATA 1154
||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 1019 GAGAAAATGTCACATTCCTGAACATTACGCAACTGTCAGAATATAGGAAGGATGGACATA 1078
Query 1155 CGACTGTGTATGGAGAACGGAGAGGGAAGCTCTTGACAAAGGAACAGAGAGCTGATCCGA 1214
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CGACTGTCTATGGCGAACGGAGAGGGAAGCTCTTGACAAAGGAACAGAGAGCTGATCCGA 1138
Query 1215 AAAACTATGGAGATTGCATCCACTGGTGTTTGCCAGGAGTTCCTGATACATGGAATGAGA 1274
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1139 AAAACTATGGAGATTGCATCCACTGGTGTTTGTCAGGAGTTCCTGATACATGGAACGAGA 1198
Query 1275 TTCTCTATGCATATTTGCTTCGCAGTCACCGCAATTTCTTCTGA 1318
|||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1199 TTCTCTATGCATATTTGCTTCGCAGTCACCGCAATTTCTTTTGA 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49292931681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5