BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73150.1
Length=1717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316265 jgi|Araly1|316265|fgenesh1_pm.C_scaffold_2001298 1940 0.0
Ahg312744 jgi|Araly1|312744|fgenesh1_pm.C_scaffold_1001524 719 0.0
> Ahg316265 jgi|Araly1|316265|fgenesh1_pm.C_scaffold_2001298
Length=1350
Score = 1940 bits (1050), Expect = 0.0
Identities = 1285/1391 (92%), Gaps = 46/1391 (3%)
Strand=Plus/Plus
Query 117 ATGGCGTCTGGTCCTATAGCTGGTGGTGGAGTTTCGAAGACGAAGCATAAATGGAGTGAT 176
||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGGCGTCTGGTCATATAGCCGGTGGTGGAGTTTCGAAGACGAAGCATAAATGGACTGAT 60
Query 177 AGTGGCAACAAAAGCCAAAAACGATCC-AAGCCCACGGTGGCGAATTCGAATTCGCTTGG 235
|||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||||||
Sbjct 61 AGTGGCAACAAAAGCCAAAAACGA-CCGAAGCCCACGATGGCGAAGTCGAATTCGCTTGG 119
Query 236 GTTGGAAGATAATCATCAGATGATGAAGATAAGTTTAAGCTCAATTTCCAAGCTTGAAGT 295
|| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 120 GTCGGAAGATAATCATCAGATGATGAAGATAAGTTTGAGCTCAATTTCGAAGCTTGAAGT 179
Query 296 TAGGAACTTGAAGCGGAAACTACAAGCTGAGCTTGAGGAAGTTAGGAGCTTGATCAAACG 355
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 TAGAAACTTGAAGCGGAAACTACAAGCTGAGCTTGAGGAAGTTAGGAGCTTGATCAAGCG 239
Query 356 GCTCGAACCACAAGGTAACAACTTCGCTCCCGTGCCGAACAAGAAGCTGAAAACAGCAAA 415
|||||| | | |||| |||||||||||||||||||||||||||||||||||
Sbjct 240 ACTCGAA-C-C------ACAA----GCTCCCGTGCCGAACAAGAAGCTGAAAACAGCAAA 287
Query 416 CGGTGGTAAGAAAG-GTGGAGTACATGGAGCTGCTGCTGATAAAGGTACTGTTCAGATTT 474
|||||||||| ||| |||||||||||||||||| | ||||||||||||||||||||| |
Sbjct 288 CGGTGGTAAG-AAGAGTGGAGTACATGGAGCTG--G-TGATAAAGGTACTGTTCAGATCT 343
Query 475 TGAAGAGCTGCAACAATTTGCTTACCAAGTTAATGAAGCATAAGTCTGGATGGATTTTCA 534
||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||
Sbjct 344 TGAAGAGCTGCAACAATTTGCTTACGAAATTAATGAAGCATAAGTCTGGATGGGTTTTCA 403
Query 535 ATACTCCAGTTGATGTAGTTACGCTTGGTTTACATGATTATCACAATATTATTAAGGAGC 594
||||||||||||||| ||||| |||||||||||||||||||||||||||| || || |||
Sbjct 404 ATACTCCAGTTGATGCAGTTATGCTTGGTTTACATGATTATCACAATATTGTTGAGAAGC 463
Query 595 CTATGGATTTAGGAACAGTGAAGACTAGGTTGAGTAAGAGTTTGTATAAGTCACCTTTGG 654
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 464 CTATGGATCTAGGAACAGTGAAGACTAGGTTGAGTAAGAGTTGGTATAAGTCACCATTGG 523
Query 655 AGTTTGCTGAGGATGTCAGACTTACTTTTAACAATGCAATGCTGTATAATCCTGTGGGGC 714
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 524 AGTTTGCTGAGGATGTGAGACTTACTTTTAACAATGCAATGCTGTATAATCCCGTGGGGC 583
Query 715 ATGATGTGTATCATATGGCTGAGATTTTGTTGAATCTGTTTGAAGAGAAATGGGTGCCTC 774
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 584 ATGATGTGCATCATATGGCTGAGTTTTTGTTGAATCTGTTTGAAGAGAAATGGGCGCCTC 643
Query 775 TTGAAACGCAGTAT-GAGTTACTTATTAGGAAGCAACAACCAGTCCGTGATATCGATTTC 833
|||||||||||||| || ||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 644 TTGAAACGCAGTATGGA-TTACTTAATAGGAAGCAACAACCAGTCCGTGATATCGATCTC 702
Query 834 CATGCTCCTGTTTCGACAAACACTCATAATGTAGAGGCGTTACCGTTACCCGCTCCTACA 893
|||||||||||||| |||||||||||||| |||| | || || ||| | | |
Sbjct 703 CATGCTCCTGTTTCAACAAACACTCATAACATAGA---G---CCATT-TCCG-T--T--A 750
Query 894 CCTTCCCTGTctcctcctcctcctcctAAAGTAGTTGAAAATAGGACTTTGGAGAGAGCT 953
|||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 751 -----CCTG----CTCCTCCTCCTCCTACAGTAGTTGAAAATAGGACTTTGGAGAGAGCA 801
Query 954 GAATCTATGACAAACCCAGTGAAACCTGCAGTTTTACCTGTTGTCCCCGAGAAGCTTGTA 1013
||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||
Sbjct 802 GAATCTATGACAAACCCAGTGAAACCTGCAGTTCTACCGGTTGTCCCTGAGAAGCCTGTA 861
Query 1014 GAAGAGGCGTCTGCAAACAGGGACTTGACGTTTGATGAGAAGCGGCA-ACTAAGTGAAGA 1072
||| | ||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 862 GAAAACGCGTCTGCAAACAGGGACTTGACGTTTGATGAGAAGCGG-AGACTTAGTGAAGA 920
Query 1073 CCTCCAGGATTTACCTTATGACAAGCTAGAGGCAGTTGTGCAGATTATAAAGAAGAG-AA 1131
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 921 CCTTCAGGATTTACCTTATGACAAGCTAGAGGCAGTTGTGCAGATTATAAAGAAGAGTAA 980
Query 1132 CTCCAGAACTCTCTCAACAAGATGATGAGATTGAGTTAGATATTGATAGTCTTGATCTGG 1191
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 -TCCAGAACTCTCTCAACAAGATGATGAGATTGAGTTAGATATTGATAGTCTTGATCTGG 1039
Query 1192 AAACACTTTGGGAGCTTTTCAGATTCGTGACTGAATATAAGGAGAGCTTAAGCAAGAAAA 1251
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1040 AAACACTTTGGGAGCTTTACAGATTCGTGACTGAATATAAGGAGAGCTCGAGCAAGAAAA 1099
Query 1252 AGGAGGAACAGGGATTAGACTCAGAAAGAGATGCTGAATCTTTTCACAATAGTGTGCACG 1311
| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1100 AAGAGGAACATGGATTAGACTCAGAAAGAGATGCTGAATCTTGTCACAATAGTGTGCAAG 1159
Query 1312 AATCGAACACGCTAGTAACTGGCCTTGAATCGTCAAAAGTTACTGAATTAGGTCATGTGG 1371
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 AACCGAACACGCTAGTAACTGGCCTTGAATCGTCAAAAGTTACTGAATTAGGTCATGTGG 1219
Query 1372 CATCTACTGTTCGACAAGAAGTAAATGTTGGAGGATCAAGTAGTTCTAACAGTTCTAGTA 1431
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 CATCTCCTGTTCGACAAGAAGTAAATGTTGGAGGATCAAGTAGTTCTAACAGTTCTAGTA 1279
Query 1432 GTGGCTCAGGCTCGGGTTCTAGTGGCTCTGACAGTGATAGCTCAGGACATGAATCTGATA 1491
|||||||||||||||||||||||| || ||||||||||||||||| |||| ||||||||
Sbjct 1280 GTGGCTCAGGCTCGGGTTCTAGTGATTCCGACAGTGATAGCTCAGGGCATGGATCTGATA 1339
Query 1492 CCGGTAATTAA 1502
||||||||||
Sbjct 1340 TCGGTAATTAA 1350
> Ahg312744 jgi|Araly1|312744|fgenesh1_pm.C_scaffold_1001524
Length=1449
Score = 719 bits (389), Expect = 0.0
Identities = 918/1161 (79%), Gaps = 86/1161 (7%)
Strand=Plus/Plus
Query 393 AACAAGAAGCTGAAAACA-GCAA---ACGGTGGTAAGAAAGGTGGAGTACATGGAGCTGC 448
|||||||||||||||||| | || | || ||||||||| |||| | ||||||
Sbjct 322 AACAAGAAGCTGAAAACAGGGAATGGA-GGAGGTAAGAAAAGTGG-G--CATGGA----- 372
Query 449 TGCTGATAAAGGTACTGTTCAGATTTTGAAGAGCTGCAACAATTTGCTTACCAAGTTAAT 508
|||||||||||||| ||||||||||| |||| ||| |||| ||||||||| || || ||
Sbjct 373 -GCTGATAAAGGTACGGTTCAGATTTTCAAGAACTGTAACAGTTTGCTTACGAAATTGAT 431
Query 509 GAAGCATAAGTCTGGATGGATTTTCAATACT-CCAGTTGATG-TAGTTACG-CTTGGTTT 565
||||||||||| || |||| | ||| || | ||||| |||| | | | | ||||| ||
Sbjct 432 GAAGCATAAGTGTGCATGGGTATTCCAT-GTCCCAGTGGATGCT-G-AAGGACTTGGCTT 488
Query 566 ACATGATTATCACAATATTATTAAGGAGCCTATGGATTTAGGAACAGTGAAGACTAGGTT 625
|||||||||||||||||| |||| |||||||||||||| || ||||||||||||| |||
Sbjct 489 GCATGATTATCACAATATTGTTAAAGAGCCTATGGATTTGGGTACAGTGAAGACTAAGTT 548
Query 626 GAGTAAGAGTTTGTATAAGTCACCTTTGGAGTTT-GCTGAGGATGTCAGACTTACTTTTA 684
| | || |||||||||||||| || ||||| ||| ||||| ||||| |||||||||||||
Sbjct 549 GGGGAAAAGTTTGTATAAGTCGCCATTGGA-TTTCGCTGAAGATGTTAGACTTACTTTTA 607
Query 685 ACAATGCAATGCTGTATAATCCTGTGGGGCATGATGTGTATCATATGGCTGAGATTTTGT 744
||||||| || |||||||||| || |||||||||||| ||| | | |||||| ||||||
Sbjct 608 ACAATGCGATTTTGTATAATCCGGTTGGGCATGATGTGCATCGTTTTGCTGAGCTTTTGT 667
Query 745 TGAATC-TGTTTGAAGAGAAATGGGT-GCCTCTTGAAACGCAGTATGAGTTA-CTT-ATT 800
|||| | |||||||||| |||||||| || |||||| ||||||||| | | ||| | |
Sbjct 668 TGAA-CATGTTTGAAGATAAATGGGTATCC-ATTGAAATGCAGTATGA-TAATCTTCA-T 723
Query 801 AGGAAGCAAC-AACC-AGTCCGTGATATCGATTTCCATGCTCCTGTTTCGACAAACACTC 858
|||||| | |||| | | |||||||| || |||| |||||||| ||| || | |||
Sbjct 724 AGGAAG-TTCAAACCAACT-CGTGATATTGAGTTCCCTGCTCCTGCTTCAACCATTGCTC 781
Query 859 ATAATGTAGAGGCGTTACCGTTACCCGCTCCT--A-CACCTTCCCTGTctcctcctcctc 915
|| ||||||| | ||||| | | | |||| | ||||||||| |||||||||||| |
Sbjct 782 CTATTGTAGAGCCATTACC---AGCAGTTCCTACACCACCTTCCCCGTCTCCTCCTCCAC 838
Query 916 ctcctA-AA------GTAGTTGAAAATAGGACTTTGGAGAGAGCTGAATCTATGACAAAC 968
| || | || ||| ||||||||||||||| |||||||| ||||||||||||| |
Sbjct 839 CACC-ACAACCTCCGGTACTTGAAAATAGGACTTGGGAGAGAGAAGAATCTATGACAATC 897
Query 969 CCAGTGAAACCTGCAGTTTTACCTGTTGTC-CCCGA-GAAGCTTGTAGAAGA-G--GCGT 1023
|||||| |||||| || | || || || | ||||| |||| || |||||| | ||
Sbjct 898 CCAGTGGAACCTGAAGCTGTAACTACTG-CTCCCGACAAAGC-TGAAGAAGAGGAAGCAC 955
Query 1024 CTG--CA-AACAGGGACTTGACGTTT-GATGAGAAGCGGCA-ACTAAGTGAAGACCTCCA 1078
||| | ||||||||| | || ||| || ||||| ||| | ||| |||||||| || ||
Sbjct 956 CTGTTAACAACAGGGACCTCAC-TTTGGAAGAGAAACGG-AGACTCAGTGAAGAGCTTCA 1013
Query 1079 GGATTTACCTTATGACAAGCTAGAGGCAGTTGTGCAGATTATAAAGAAGAG-AACTCCAG 1137
||| || ||||||||||| |||||| | ||||| ||||| ||||||||||| || |||||
Sbjct 1014 GGACTTGCCTTATGACAAACTAGAGACTGTTGTTCAGATCATAAAGAAGAGCAA-TCCAG 1072
Query 1138 AACTCTCTCAACAAGATGATGAGATTGAGTTAGATATTGATAGTCTTGATCTGGAA-ACA 1196
| ||||||||||||||||||||||||||| | |||||||||||||||||| | || ||
Sbjct 1073 AGCTCTCTCAACAAGATGATGAGATTGAGCTGGATATTGATAGTCTTGATAT-CAACACG 1131
Query 1197 CTTTGGGAGCTTT-TCAGATTCGTGACTGAATATAAGGAGAGCTTAAGCAAGAAAAAGGA 1255
||||||||||||| | ||||| ||||||| |||||||||||||| ||||||||||| |
Sbjct 1132 CTTTGGGAGCTTTAT-AGATTTGTGACTGGGTATAAGGAGAGCTTGAGCAAGAAAAACGT 1190
Query 1256 GGAACAGGGATTAGACTCAGAAAGAGATGCTGAATCTTTTCACAATAGTGTGCACGAATC 1315
|| |||||||| | ||||||||||||||||||||| ||||||||||| | || ||| |
Sbjct 1191 GGCTCAGGGATTTGGTTCAGAAAGAGATGCTGAATCTGTTCACAATAGTATTCAAGAA-C 1249
Query 1316 GAA-CACGCTAGTAACTGGC-CTTGAATCGTCAAAAGTTACTGAATTAGG----TC-A-T 1367
|| ||| |||||||||||| | || | || | ||||||||||| ||| | | |
Sbjct 1250 CAACCACTCTAGTAACTGGCAC-CAAAACATCGAGAGTTACTGAATCAGGAAAAGCAATT 1308
Query 1368 -GT--GGCATCTACTGTTCGACAAGAAGTA-AATGTTGGAGGATCAAGTAGTTCTAACAG 1423
|| ||||| ||| ||| |||||| | |||| | ||||||||||||||||||||
Sbjct 1309 CGTACATCATCTCCTGGTCGGCAAGAA-AACAATGCAAGTGGATCAAGTAGTTCTAACAG 1367
Query 1424 TTCTAGTAGTGGCTCAGGCTCGGGTTCTAGTGGCTCTGACAGTGATAGCTC---AGGACA 1480
||||||||||| |||||| || | ||||||| ||||| ||||| ||||| |||||
Sbjct 1368 TTCTAGTAGTGACTCAGGATCTTGCTCTAGTGATTCTGATAGTGACAGCTCCTCAGGACG 1427
Query 1481 TGAATCTGATACCGGTAATTA 1501
|| ||| |||| ||||||||
Sbjct 1428 TGGATCAGATAATGGTAATTA 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64410604295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5