BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G73150.1 Length=1717 Score E Sequences producing significant alignments: (Bits) Value Ahg316265 jgi|Araly1|316265|fgenesh1_pm.C_scaffold_2001298 1940 0.0 Ahg312744 jgi|Araly1|312744|fgenesh1_pm.C_scaffold_1001524 719 0.0 > Ahg316265 jgi|Araly1|316265|fgenesh1_pm.C_scaffold_2001298 Length=1350 Score = 1940 bits (1050), Expect = 0.0 Identities = 1285/1391 (92%), Gaps = 46/1391 (3%) Strand=Plus/Plus Query 117 ATGGCGTCTGGTCCTATAGCTGGTGGTGGAGTTTCGAAGACGAAGCATAAATGGAGTGAT 176 ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 1 ATGGCGTCTGGTCATATAGCCGGTGGTGGAGTTTCGAAGACGAAGCATAAATGGACTGAT 60 Query 177 AGTGGCAACAAAAGCCAAAAACGATCC-AAGCCCACGGTGGCGAATTCGAATTCGCTTGG 235 |||||||||||||||||||||||| || ||||||||| ||||||| |||||||||||||| Sbjct 61 AGTGGCAACAAAAGCCAAAAACGA-CCGAAGCCCACGATGGCGAAGTCGAATTCGCTTGG 119 Query 236 GTTGGAAGATAATCATCAGATGATGAAGATAAGTTTAAGCTCAATTTCCAAGCTTGAAGT 295 || ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 120 GTCGGAAGATAATCATCAGATGATGAAGATAAGTTTGAGCTCAATTTCGAAGCTTGAAGT 179 Query 296 TAGGAACTTGAAGCGGAAACTACAAGCTGAGCTTGAGGAAGTTAGGAGCTTGATCAAACG 355 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 180 TAGAAACTTGAAGCGGAAACTACAAGCTGAGCTTGAGGAAGTTAGGAGCTTGATCAAGCG 239 Query 356 GCTCGAACCACAAGGTAACAACTTCGCTCCCGTGCCGAACAAGAAGCTGAAAACAGCAAA 415 |||||| | | |||| ||||||||||||||||||||||||||||||||||| Sbjct 240 ACTCGAA-C-C------ACAA----GCTCCCGTGCCGAACAAGAAGCTGAAAACAGCAAA 287 Query 416 CGGTGGTAAGAAAG-GTGGAGTACATGGAGCTGCTGCTGATAAAGGTACTGTTCAGATTT 474 |||||||||| ||| |||||||||||||||||| | ||||||||||||||||||||| | Sbjct 288 CGGTGGTAAG-AAGAGTGGAGTACATGGAGCTG--G-TGATAAAGGTACTGTTCAGATCT 343 Query 475 TGAAGAGCTGCAACAATTTGCTTACCAAGTTAATGAAGCATAAGTCTGGATGGATTTTCA 534 ||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||| Sbjct 344 TGAAGAGCTGCAACAATTTGCTTACGAAATTAATGAAGCATAAGTCTGGATGGGTTTTCA 403 Query 535 ATACTCCAGTTGATGTAGTTACGCTTGGTTTACATGATTATCACAATATTATTAAGGAGC 594 ||||||||||||||| ||||| |||||||||||||||||||||||||||| || || ||| Sbjct 404 ATACTCCAGTTGATGCAGTTATGCTTGGTTTACATGATTATCACAATATTGTTGAGAAGC 463 Query 595 CTATGGATTTAGGAACAGTGAAGACTAGGTTGAGTAAGAGTTTGTATAAGTCACCTTTGG 654 |||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 464 CTATGGATCTAGGAACAGTGAAGACTAGGTTGAGTAAGAGTTGGTATAAGTCACCATTGG 523 Query 655 AGTTTGCTGAGGATGTCAGACTTACTTTTAACAATGCAATGCTGTATAATCCTGTGGGGC 714 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 524 AGTTTGCTGAGGATGTGAGACTTACTTTTAACAATGCAATGCTGTATAATCCCGTGGGGC 583 Query 715 ATGATGTGTATCATATGGCTGAGATTTTGTTGAATCTGTTTGAAGAGAAATGGGTGCCTC 774 |||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 584 ATGATGTGCATCATATGGCTGAGTTTTTGTTGAATCTGTTTGAAGAGAAATGGGCGCCTC 643 Query 775 TTGAAACGCAGTAT-GAGTTACTTATTAGGAAGCAACAACCAGTCCGTGATATCGATTTC 833 |||||||||||||| || ||||||| ||||||||||||||||||||||||||||||| || Sbjct 644 TTGAAACGCAGTATGGA-TTACTTAATAGGAAGCAACAACCAGTCCGTGATATCGATCTC 702 Query 834 CATGCTCCTGTTTCGACAAACACTCATAATGTAGAGGCGTTACCGTTACCCGCTCCTACA 893 |||||||||||||| |||||||||||||| |||| | || || ||| | | | Sbjct 703 CATGCTCCTGTTTCAACAAACACTCATAACATAGA---G---CCATT-TCCG-T--T--A 750 Query 894 CCTTCCCTGTctcctcctcctcctcctAAAGTAGTTGAAAATAGGACTTTGGAGAGAGCT 953 |||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 751 -----CCTG----CTCCTCCTCCTCCTACAGTAGTTGAAAATAGGACTTTGGAGAGAGCA 801 Query 954 GAATCTATGACAAACCCAGTGAAACCTGCAGTTTTACCTGTTGTCCCCGAGAAGCTTGTA 1013 ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| |||| Sbjct 802 GAATCTATGACAAACCCAGTGAAACCTGCAGTTCTACCGGTTGTCCCTGAGAAGCCTGTA 861 Query 1014 GAAGAGGCGTCTGCAAACAGGGACTTGACGTTTGATGAGAAGCGGCA-ACTAAGTGAAGA 1072 ||| | ||||||||||||||||||||||||||||||||||||||| | ||| |||||||| Sbjct 862 GAAAACGCGTCTGCAAACAGGGACTTGACGTTTGATGAGAAGCGG-AGACTTAGTGAAGA 920 Query 1073 CCTCCAGGATTTACCTTATGACAAGCTAGAGGCAGTTGTGCAGATTATAAAGAAGAG-AA 1131 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 921 CCTTCAGGATTTACCTTATGACAAGCTAGAGGCAGTTGTGCAGATTATAAAGAAGAGTAA 980 Query 1132 CTCCAGAACTCTCTCAACAAGATGATGAGATTGAGTTAGATATTGATAGTCTTGATCTGG 1191 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 981 -TCCAGAACTCTCTCAACAAGATGATGAGATTGAGTTAGATATTGATAGTCTTGATCTGG 1039 Query 1192 AAACACTTTGGGAGCTTTTCAGATTCGTGACTGAATATAAGGAGAGCTTAAGCAAGAAAA 1251 |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1040 AAACACTTTGGGAGCTTTACAGATTCGTGACTGAATATAAGGAGAGCTCGAGCAAGAAAA 1099 Query 1252 AGGAGGAACAGGGATTAGACTCAGAAAGAGATGCTGAATCTTTTCACAATAGTGTGCACG 1311 | |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 1100 AAGAGGAACATGGATTAGACTCAGAAAGAGATGCTGAATCTTGTCACAATAGTGTGCAAG 1159 Query 1312 AATCGAACACGCTAGTAACTGGCCTTGAATCGTCAAAAGTTACTGAATTAGGTCATGTGG 1371 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1160 AACCGAACACGCTAGTAACTGGCCTTGAATCGTCAAAAGTTACTGAATTAGGTCATGTGG 1219 Query 1372 CATCTACTGTTCGACAAGAAGTAAATGTTGGAGGATCAAGTAGTTCTAACAGTTCTAGTA 1431 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1220 CATCTCCTGTTCGACAAGAAGTAAATGTTGGAGGATCAAGTAGTTCTAACAGTTCTAGTA 1279 Query 1432 GTGGCTCAGGCTCGGGTTCTAGTGGCTCTGACAGTGATAGCTCAGGACATGAATCTGATA 1491 |||||||||||||||||||||||| || ||||||||||||||||| |||| |||||||| Sbjct 1280 GTGGCTCAGGCTCGGGTTCTAGTGATTCCGACAGTGATAGCTCAGGGCATGGATCTGATA 1339 Query 1492 CCGGTAATTAA 1502 |||||||||| Sbjct 1340 TCGGTAATTAA 1350 > Ahg312744 jgi|Araly1|312744|fgenesh1_pm.C_scaffold_1001524 Length=1449 Score = 719 bits (389), Expect = 0.0 Identities = 918/1161 (79%), Gaps = 86/1161 (7%) Strand=Plus/Plus Query 393 AACAAGAAGCTGAAAACA-GCAA---ACGGTGGTAAGAAAGGTGGAGTACATGGAGCTGC 448 |||||||||||||||||| | || | || ||||||||| |||| | |||||| Sbjct 322 AACAAGAAGCTGAAAACAGGGAATGGA-GGAGGTAAGAAAAGTGG-G--CATGGA----- 372 Query 449 TGCTGATAAAGGTACTGTTCAGATTTTGAAGAGCTGCAACAATTTGCTTACCAAGTTAAT 508 |||||||||||||| ||||||||||| |||| ||| |||| ||||||||| || || || Sbjct 373 -GCTGATAAAGGTACGGTTCAGATTTTCAAGAACTGTAACAGTTTGCTTACGAAATTGAT 431 Query 509 GAAGCATAAGTCTGGATGGATTTTCAATACT-CCAGTTGATG-TAGTTACG-CTTGGTTT 565 ||||||||||| || |||| | ||| || | ||||| |||| | | | | ||||| || Sbjct 432 GAAGCATAAGTGTGCATGGGTATTCCAT-GTCCCAGTGGATGCT-G-AAGGACTTGGCTT 488 Query 566 ACATGATTATCACAATATTATTAAGGAGCCTATGGATTTAGGAACAGTGAAGACTAGGTT 625 |||||||||||||||||| |||| |||||||||||||| || ||||||||||||| ||| Sbjct 489 GCATGATTATCACAATATTGTTAAAGAGCCTATGGATTTGGGTACAGTGAAGACTAAGTT 548 Query 626 GAGTAAGAGTTTGTATAAGTCACCTTTGGAGTTT-GCTGAGGATGTCAGACTTACTTTTA 684 | | || |||||||||||||| || ||||| ||| ||||| ||||| ||||||||||||| Sbjct 549 GGGGAAAAGTTTGTATAAGTCGCCATTGGA-TTTCGCTGAAGATGTTAGACTTACTTTTA 607 Query 685 ACAATGCAATGCTGTATAATCCTGTGGGGCATGATGTGTATCATATGGCTGAGATTTTGT 744 ||||||| || |||||||||| || |||||||||||| ||| | | |||||| |||||| Sbjct 608 ACAATGCGATTTTGTATAATCCGGTTGGGCATGATGTGCATCGTTTTGCTGAGCTTTTGT 667 Query 745 TGAATC-TGTTTGAAGAGAAATGGGT-GCCTCTTGAAACGCAGTATGAGTTA-CTT-ATT 800 |||| | |||||||||| |||||||| || |||||| ||||||||| | | ||| | | Sbjct 668 TGAA-CATGTTTGAAGATAAATGGGTATCC-ATTGAAATGCAGTATGA-TAATCTTCA-T 723 Query 801 AGGAAGCAAC-AACC-AGTCCGTGATATCGATTTCCATGCTCCTGTTTCGACAAACACTC 858 |||||| | |||| | | |||||||| || |||| |||||||| ||| || | ||| Sbjct 724 AGGAAG-TTCAAACCAACT-CGTGATATTGAGTTCCCTGCTCCTGCTTCAACCATTGCTC 781 Query 859 ATAATGTAGAGGCGTTACCGTTACCCGCTCCT--A-CACCTTCCCTGTctcctcctcctc 915 || ||||||| | ||||| | | | |||| | ||||||||| |||||||||||| | Sbjct 782 CTATTGTAGAGCCATTACC---AGCAGTTCCTACACCACCTTCCCCGTCTCCTCCTCCAC 838 Query 916 ctcctA-AA------GTAGTTGAAAATAGGACTTTGGAGAGAGCTGAATCTATGACAAAC 968 | || | || ||| ||||||||||||||| |||||||| ||||||||||||| | Sbjct 839 CACC-ACAACCTCCGGTACTTGAAAATAGGACTTGGGAGAGAGAAGAATCTATGACAATC 897 Query 969 CCAGTGAAACCTGCAGTTTTACCTGTTGTC-CCCGA-GAAGCTTGTAGAAGA-G--GCGT 1023 |||||| |||||| || | || || || | ||||| |||| || |||||| | || Sbjct 898 CCAGTGGAACCTGAAGCTGTAACTACTG-CTCCCGACAAAGC-TGAAGAAGAGGAAGCAC 955 Query 1024 CTG--CA-AACAGGGACTTGACGTTT-GATGAGAAGCGGCA-ACTAAGTGAAGACCTCCA 1078 ||| | ||||||||| | || ||| || ||||| ||| | ||| |||||||| || || Sbjct 956 CTGTTAACAACAGGGACCTCAC-TTTGGAAGAGAAACGG-AGACTCAGTGAAGAGCTTCA 1013 Query 1079 GGATTTACCTTATGACAAGCTAGAGGCAGTTGTGCAGATTATAAAGAAGAG-AACTCCAG 1137 ||| || ||||||||||| |||||| | ||||| ||||| ||||||||||| || ||||| Sbjct 1014 GGACTTGCCTTATGACAAACTAGAGACTGTTGTTCAGATCATAAAGAAGAGCAA-TCCAG 1072 Query 1138 AACTCTCTCAACAAGATGATGAGATTGAGTTAGATATTGATAGTCTTGATCTGGAA-ACA 1196 | ||||||||||||||||||||||||||| | |||||||||||||||||| | || || Sbjct 1073 AGCTCTCTCAACAAGATGATGAGATTGAGCTGGATATTGATAGTCTTGATAT-CAACACG 1131 Query 1197 CTTTGGGAGCTTT-TCAGATTCGTGACTGAATATAAGGAGAGCTTAAGCAAGAAAAAGGA 1255 ||||||||||||| | ||||| ||||||| |||||||||||||| ||||||||||| | Sbjct 1132 CTTTGGGAGCTTTAT-AGATTTGTGACTGGGTATAAGGAGAGCTTGAGCAAGAAAAACGT 1190 Query 1256 GGAACAGGGATTAGACTCAGAAAGAGATGCTGAATCTTTTCACAATAGTGTGCACGAATC 1315 || |||||||| | ||||||||||||||||||||| ||||||||||| | || ||| | Sbjct 1191 GGCTCAGGGATTTGGTTCAGAAAGAGATGCTGAATCTGTTCACAATAGTATTCAAGAA-C 1249 Query 1316 GAA-CACGCTAGTAACTGGC-CTTGAATCGTCAAAAGTTACTGAATTAGG----TC-A-T 1367 || ||| |||||||||||| | || | || | ||||||||||| ||| | | | Sbjct 1250 CAACCACTCTAGTAACTGGCAC-CAAAACATCGAGAGTTACTGAATCAGGAAAAGCAATT 1308 Query 1368 -GT--GGCATCTACTGTTCGACAAGAAGTA-AATGTTGGAGGATCAAGTAGTTCTAACAG 1423 || ||||| ||| ||| |||||| | |||| | |||||||||||||||||||| Sbjct 1309 CGTACATCATCTCCTGGTCGGCAAGAA-AACAATGCAAGTGGATCAAGTAGTTCTAACAG 1367 Query 1424 TTCTAGTAGTGGCTCAGGCTCGGGTTCTAGTGGCTCTGACAGTGATAGCTC---AGGACA 1480 ||||||||||| |||||| || | ||||||| ||||| ||||| ||||| ||||| Sbjct 1368 TTCTAGTAGTGACTCAGGATCTTGCTCTAGTGATTCTGATAGTGACAGCTCCTCAGGACG 1427 Query 1481 TGAATCTGATACCGGTAATTA 1501 || ||| |||| |||||||| Sbjct 1428 TGGATCAGATAATGGTAATTA 1448 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64410604295 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5