BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73160.1
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316266 jgi|Araly1|316266|fgenesh1_pm.C_scaffold_2001299 2128 0.0
> Ahg316266 jgi|Araly1|316266|fgenesh1_pm.C_scaffold_2001299
Length=1488
Score = 2128 bits (1152), Expect = 0.0
Identities = 1338/1428 (94%), Gaps = 11/1428 (1%)
Strand=Plus/Plus
Query 1 ATGGCcttcaagaaccattcttcaagaacaactctttcttcttcttcttccacttcattt 60
|||||||||||||| |||||||||||||| | | || |||||| |||||||||||||||
Sbjct 1 ATGGCCTTCAAGAATCATTCTTCAAGAACTA-T-GTT-TTCTTCATCTTCCACTTCATTT 57
Query 61 tcattcagattcaCAACAATCATTACCTTAGC---ATTCATCTTTTGTTCTTCTTACTAC 117
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 58 TCATTCAGGTTCACAACAATCATTACCTTAGCAATATTCATCTTTTGTTCTTCTTACTAC 117
Query 118 ATTTTCTTCTCACAG-TTTGATTACTCTCCGGTGACTTCTTCACCGGAAAATCCTCCTTT 176
||||| ||||||| | || |||| ||||||||||||||||||||||| ||||||||| ||
Sbjct 118 ATTTTATTCTCAC-GATTGGATTGCTCTCCGGTGACTTCTTCACCGGGAAATCCTCCCTT 176
Query 177 CGCAGGAGATCTTCGAGACCTGACATTCCCTTGGAACAAACTCTCACTTGGACCAATCTC 236
||| ||||||||||||||||| |||| |||||||||||||||||| || |||||||||||
Sbjct 177 CGCTGGAGATCTTCGAGACCTAACATCCCCTTGGAACAAACTCTCTCTGGGACCAATCTC 236
Query 237 GGAGAAGCTCAAACTCGCTGTCTTCTGCAAGTCATGGCCTGTTGGTTCGATCCCCGGAGG 296
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CGAGAAGCTCAAACTCGCCGTCTTCTGCAAGTCATGGCCTGTTGGTTCGATCCCCGGAGG 296
Query 297 AATGGAGCGTCATGCTTACACACTCTACACTTCTCTCGCCTCAAGAGGTCACGAGATTCA 356
|||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 297 AATGGAGCGTCACGCTTACACTCTCTACACTTCTCTCGCGTCAAGAGGTCACGAGATTCA 356
Query 357 CGTCTTCACGGTTTCTTCCGACAGAAGTAACCGAGAAGAGTACTACAACAAAGGAGATCT 416
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 357 CGTCTTCACGGTTTCTTCCGACAGAAGTAACCGAGAAGAGTACTACAACAGAGGAGATCT 416
Query 417 CCATGTCTACTTTGCTCCAAACGAACACGGCTCACTTAACCACTCTCGAGCTTTTGAGAT 476
|||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 417 CCATGTCTACTTCGCTCCAAACGAACACGGCACACTTAACCACTCTCAAGCTTTTGAGAT 476
Query 477 CTTCCATAAAATCAACAGTCTAGATCATCATTCCTTTGATTATGTTCACACTGAGAGTGT 536
|||||| ||||||||| |||||||||||| |||| |||||||||||||||||||||||
Sbjct 477 CTTCCACAAAATCAACGGTCTAGATCATC---CCTTCGATTATGTTCACACTGAGAGTGT 533
Query 537 TTCTCTGCCTCATTGGCGAGTCAAAATGGTGCCTAATGGTGACATAGCTGTGACATGGCA 596
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 534 TTCTCTGCCTCATTGGCGAGTCAAAATGGTGCCTAACGGTGACATAGCTGTGACATGGCA 593
Query 597 CGGAATCTGGTACGAGATTATGCATTCAAATCTTTTTCAAGAACTTTCCAATGATCGTCC 656
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 594 CGGAATCTGGTACGAGATCATGCATTCCAATCTTTTCCAAGAACTTTCCAATGATCGTCC 653
Query 657 TAGCTCTGATCTTCAACAAACGATGCCTAGACTCGTCGATGAAATCAGATTCTTCCCAAA 716
|| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 654 TATCTCAGATCTTCAACAAACGATGCCTAGACTCGTCGACGAAATCAGATTCTTCCCAAA 713
Query 717 ATATAAACAGCATATTTGCATTAGCAACAGCGCGCGCGAGGTACTAGTTAACATCTATCA 776
||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||
Sbjct 714 ATATAAACAGCATATTTGCATAAGCAACAGTGCGCGTGAGGTTCTAGTTAACATCTATCA 773
Query 777 ACTTCCTAAGAGAAAAGTTCACGTTATAGTCAACGGTGTTGACCAAACCAAGTTCGTGTA 836
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GCTTCCTAAGAGAAATGTTCACGTTATAGTCAACGGTGTTGACCAAACCAAGTTCGTGTA 833
Query 837 TTCTCCTGAATCTGGAGCTAGGTTCAGGGCGAAACACGGTATTCCTGACAATGGGACATA 896
||| |||||||| |||||||| ||||||| |||||||||| |||||||||||||||| |
Sbjct 834 TTCCCCTGAATCGGGAGCTAGATTCAGGGTGAAACACGGTGTTCCTGACAATGGGACGTT 893
Query 897 TATTGTGATGGGTGTGTCTGGACGTTTGGTGAGAGACAAAGGACATCCACTTCTATATGA 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 894 TATTGTGATGGGTGTGTCTGGACGTTTGGTGAGAGACAAAGGACATCCACTTCTCTATGA 953
Query 957 AGCGTTTGCTTTGCTCGTTAAAATGCACCCGAAAGTCTATTTGCTTGTGGCTGGATCTGG 1016
||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 954 AGCTTTTGCTTTGCTCGTTAAAATGCACCCGCAAGTCTATCTGCTTGTGGCTGGATCTGG 1013
Query 1017 TCCTTGGGGCAAAAGATACGCGGAATTAGGCGAAAACGTTAGGGTTTTAGGAGCTTTAGA 1076
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1014 TCCTTGGGGTAAAAGATACGCGGAATTAGGTGAAAACGTTAGGGTTTTAGGAGCTTTAAA 1073
Query 1077 GCCAGAGGAGCTCTCTGGTTTCTACAACGCTTTAGATGTGTTTGTGAATCCGACGTTGAG 1136
||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1074 ACCAGAAGAGCTCTCTGGTTTCTACAACGCGTTAGATGTGTTTGTGAATCCTACATTGAG 1133
Query 1137 ACCACAGGGGCTTGATTTGACGATCATTGAGGCGATGCAGTGTGGGAAACCTGTCGTGGC 1196
||| || |||||||||||||| ||||| |||||||||||||||| ||||||||| ||||
Sbjct 1134 ACCGCAAGGGCTTGATTTGACAATCATCGAGGCGATGCAGTGTGTGAAACCTGTAGTGGT 1193
Query 1197 ACCTAATTATCCAAGCATTGTTGGGACAGTGGTTGTGGACGAGCGTTTTGGGTACACATT 1256
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1194 ACCTAATTATCCAAGCATTGTTGGGACAGTGGTTGTGGATGAGCGTTTTGGGTACACATT 1253
Query 1257 TTCTCCAAACGTGAGATCTCTTGTTGAGACTTTGGATTCTGTTGTAAGAGATGGGCCTAG 1316
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1254 TTCTCCAAATGTGAGATCTCTTGTTGAGACGTTGGATTCTGTTGTAAGAGATGGATCTAT 1313
Query 1317 GGTTTTGGAGATGAAAGGAATAGCTTGTAAGGGATACGCTCTTTCGATGTTTACAGCGAC 1376
|||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||
Sbjct 1314 TGTTTTGGAGATGAAAGGAATAGCTTGCAAGGTTTACGCTCTTTCAATGTTTACAGCGAC 1373
Query 1377 TCAAATGGCTTCGGCTTATGAGAGATTCTTTATGTGTATGAAAAATGA 1424
|| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1374 TCGAATGGCTTCGGCTTATGAGAGATTCTTTATGTGTATGAAGAATGA 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54659501575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5