BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G73160.1 Length=1461 Score E Sequences producing significant alignments: (Bits) Value Ahg316266 jgi|Araly1|316266|fgenesh1_pm.C_scaffold_2001299 2128 0.0 > Ahg316266 jgi|Araly1|316266|fgenesh1_pm.C_scaffold_2001299 Length=1488 Score = 2128 bits (1152), Expect = 0.0 Identities = 1338/1428 (94%), Gaps = 11/1428 (1%) Strand=Plus/Plus Query 1 ATGGCcttcaagaaccattcttcaagaacaactctttcttcttcttcttccacttcattt 60 |||||||||||||| |||||||||||||| | | || |||||| ||||||||||||||| Sbjct 1 ATGGCCTTCAAGAATCATTCTTCAAGAACTA-T-GTT-TTCTTCATCTTCCACTTCATTT 57 Query 61 tcattcagattcaCAACAATCATTACCTTAGC---ATTCATCTTTTGTTCTTCTTACTAC 117 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 58 TCATTCAGGTTCACAACAATCATTACCTTAGCAATATTCATCTTTTGTTCTTCTTACTAC 117 Query 118 ATTTTCTTCTCACAG-TTTGATTACTCTCCGGTGACTTCTTCACCGGAAAATCCTCCTTT 176 ||||| ||||||| | || |||| ||||||||||||||||||||||| ||||||||| || Sbjct 118 ATTTTATTCTCAC-GATTGGATTGCTCTCCGGTGACTTCTTCACCGGGAAATCCTCCCTT 176 Query 177 CGCAGGAGATCTTCGAGACCTGACATTCCCTTGGAACAAACTCTCACTTGGACCAATCTC 236 ||| ||||||||||||||||| |||| |||||||||||||||||| || ||||||||||| Sbjct 177 CGCTGGAGATCTTCGAGACCTAACATCCCCTTGGAACAAACTCTCTCTGGGACCAATCTC 236 Query 237 GGAGAAGCTCAAACTCGCTGTCTTCTGCAAGTCATGGCCTGTTGGTTCGATCCCCGGAGG 296 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 237 CGAGAAGCTCAAACTCGCCGTCTTCTGCAAGTCATGGCCTGTTGGTTCGATCCCCGGAGG 296 Query 297 AATGGAGCGTCATGCTTACACACTCTACACTTCTCTCGCCTCAAGAGGTCACGAGATTCA 356 |||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 297 AATGGAGCGTCACGCTTACACTCTCTACACTTCTCTCGCGTCAAGAGGTCACGAGATTCA 356 Query 357 CGTCTTCACGGTTTCTTCCGACAGAAGTAACCGAGAAGAGTACTACAACAAAGGAGATCT 416 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 357 CGTCTTCACGGTTTCTTCCGACAGAAGTAACCGAGAAGAGTACTACAACAGAGGAGATCT 416 Query 417 CCATGTCTACTTTGCTCCAAACGAACACGGCTCACTTAACCACTCTCGAGCTTTTGAGAT 476 |||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 417 CCATGTCTACTTCGCTCCAAACGAACACGGCACACTTAACCACTCTCAAGCTTTTGAGAT 476 Query 477 CTTCCATAAAATCAACAGTCTAGATCATCATTCCTTTGATTATGTTCACACTGAGAGTGT 536 |||||| ||||||||| |||||||||||| |||| ||||||||||||||||||||||| Sbjct 477 CTTCCACAAAATCAACGGTCTAGATCATC---CCTTCGATTATGTTCACACTGAGAGTGT 533 Query 537 TTCTCTGCCTCATTGGCGAGTCAAAATGGTGCCTAATGGTGACATAGCTGTGACATGGCA 596 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 534 TTCTCTGCCTCATTGGCGAGTCAAAATGGTGCCTAACGGTGACATAGCTGTGACATGGCA 593 Query 597 CGGAATCTGGTACGAGATTATGCATTCAAATCTTTTTCAAGAACTTTCCAATGATCGTCC 656 |||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| Sbjct 594 CGGAATCTGGTACGAGATCATGCATTCCAATCTTTTCCAAGAACTTTCCAATGATCGTCC 653 Query 657 TAGCTCTGATCTTCAACAAACGATGCCTAGACTCGTCGATGAAATCAGATTCTTCCCAAA 716 || ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 654 TATCTCAGATCTTCAACAAACGATGCCTAGACTCGTCGACGAAATCAGATTCTTCCCAAA 713 Query 717 ATATAAACAGCATATTTGCATTAGCAACAGCGCGCGCGAGGTACTAGTTAACATCTATCA 776 ||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||| Sbjct 714 ATATAAACAGCATATTTGCATAAGCAACAGTGCGCGTGAGGTTCTAGTTAACATCTATCA 773 Query 777 ACTTCCTAAGAGAAAAGTTCACGTTATAGTCAACGGTGTTGACCAAACCAAGTTCGTGTA 836 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 774 GCTTCCTAAGAGAAATGTTCACGTTATAGTCAACGGTGTTGACCAAACCAAGTTCGTGTA 833 Query 837 TTCTCCTGAATCTGGAGCTAGGTTCAGGGCGAAACACGGTATTCCTGACAATGGGACATA 896 ||| |||||||| |||||||| ||||||| |||||||||| |||||||||||||||| | Sbjct 834 TTCCCCTGAATCGGGAGCTAGATTCAGGGTGAAACACGGTGTTCCTGACAATGGGACGTT 893 Query 897 TATTGTGATGGGTGTGTCTGGACGTTTGGTGAGAGACAAAGGACATCCACTTCTATATGA 956 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 894 TATTGTGATGGGTGTGTCTGGACGTTTGGTGAGAGACAAAGGACATCCACTTCTCTATGA 953 Query 957 AGCGTTTGCTTTGCTCGTTAAAATGCACCCGAAAGTCTATTTGCTTGTGGCTGGATCTGG 1016 ||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 954 AGCTTTTGCTTTGCTCGTTAAAATGCACCCGCAAGTCTATCTGCTTGTGGCTGGATCTGG 1013 Query 1017 TCCTTGGGGCAAAAGATACGCGGAATTAGGCGAAAACGTTAGGGTTTTAGGAGCTTTAGA 1076 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 1014 TCCTTGGGGTAAAAGATACGCGGAATTAGGTGAAAACGTTAGGGTTTTAGGAGCTTTAAA 1073 Query 1077 GCCAGAGGAGCTCTCTGGTTTCTACAACGCTTTAGATGTGTTTGTGAATCCGACGTTGAG 1136 ||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct 1074 ACCAGAAGAGCTCTCTGGTTTCTACAACGCGTTAGATGTGTTTGTGAATCCTACATTGAG 1133 Query 1137 ACCACAGGGGCTTGATTTGACGATCATTGAGGCGATGCAGTGTGGGAAACCTGTCGTGGC 1196 ||| || |||||||||||||| ||||| |||||||||||||||| ||||||||| |||| Sbjct 1134 ACCGCAAGGGCTTGATTTGACAATCATCGAGGCGATGCAGTGTGTGAAACCTGTAGTGGT 1193 Query 1197 ACCTAATTATCCAAGCATTGTTGGGACAGTGGTTGTGGACGAGCGTTTTGGGTACACATT 1256 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1194 ACCTAATTATCCAAGCATTGTTGGGACAGTGGTTGTGGATGAGCGTTTTGGGTACACATT 1253 Query 1257 TTCTCCAAACGTGAGATCTCTTGTTGAGACTTTGGATTCTGTTGTAAGAGATGGGCCTAG 1316 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 1254 TTCTCCAAATGTGAGATCTCTTGTTGAGACGTTGGATTCTGTTGTAAGAGATGGATCTAT 1313 Query 1317 GGTTTTGGAGATGAAAGGAATAGCTTGTAAGGGATACGCTCTTTCGATGTTTACAGCGAC 1376 |||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| Sbjct 1314 TGTTTTGGAGATGAAAGGAATAGCTTGCAAGGTTTACGCTCTTTCAATGTTTACAGCGAC 1373 Query 1377 TCAAATGGCTTCGGCTTATGAGAGATTCTTTATGTGTATGAAAAATGA 1424 || ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1374 TCGAATGGCTTCGGCTTATGAGAGATTCTTTATGTGTATGAAGAATGA 1421 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54659501575 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5