BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73170.1
Length=2076
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316268 jgi|Araly1|316268|fgenesh1_pm.C_scaffold_2001301 3110 0.0
> Ahg316268 jgi|Araly1|316268|fgenesh1_pm.C_scaffold_2001301
Length=1986
Score = 3110 bits (1684), Expect = 0.0
Identities = 1906/2009 (95%), Gaps = 31/2009 (2%)
Strand=Plus/Plus
Query 15 ATGCTGAGCTTATCATTGAGTAATCATGTTCCTCCATTAACGCTCTTGAGCCATGAACGA 74
||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1 ATGCTGAGCTTATCACTGAGTAATCATGTTCCTCCATTAACGCTCTTGCGTCATGAACGA 60
Query 75 A----GA--ATCCTCAAGCTCCAAAGTCGATCGTCTATTCTCTTTCACCAACTCTTCCAC 128
| || |||||||||||| | ||||||||||| ||||||||||||| |||||||||
Sbjct 61 AGCTTGAGCTTCCTCAAGCTCCGATGTCGATCGTCTCTTCTCTTTCACCACCTCTTCCAC 120
Query 129 ACTAAGTTCCTTCTCCTGTCGAATTCTTCCTCTTTGTCTTCTTCACATGGAGTTGTTGCT 188
||||| |||| | | | ||| || || ||||||||||| |||||||||||||
Sbjct 121 ACTAAATTCC-T-T-C--TCG-----TT--TC---GTCTTCTTCACCTGGAGTTGTTGCT 165
Query 189 ATTTCGGCATCTCCGTCTTCAGTCGCAGTTCCGGAATTAGAAGACGAGGACCACTTCGAT 248
|||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct 166 ATTTCGGCATCT---TCGTC--TC-CAGTTCCGGAATTAGAAGACGAGGACCACTTCGAT 219
Query 249 GACGAATTACGTCGTCTATTGGCGCTCGTACCGGAGGAGATACGCCAGACACTGA-AGGA 307
||||||||||| ||||| ||||| || ||||||||||||||||||| |||||| | || |
Sbjct 220 GACGAATTACGCCGTCTGTTGGCACTGGTACCGGAGGAGATACGCCGGACACT-AGAGAA 278
Query 308 GCACCCTGAAATTAGTGAACTCATAGAGATAGTGTTGGATTTAGGTCGTAAACCTCTGGC 367
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 279 GCACCCTGAAATTAGTGAACTCATAGAGGTAGTGTTGGATTTAGGTCGTAAACCTCTGGC 338
Query 368 GCGATTCCCTTCAGGTGACTTTGTTATCTCCGACGATGCTGTTAGAGTTAAAGATCTGGA 427
|||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 339 GCGATTCCCTTCTGGTGATTTTGTTATCTCCGACGAAGCTGTTAGAGTTAAAGATCTGGA 398
Query 428 ATTCGCTGTTTCTCAGGTTGGTGAGTTTACTAATGATAATCGAGCTGGAATCAGCCGGAC 487
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 399 ATTCGCTGTTTCTCAGGTCGGTGAGTTTACTAATGATAATCGAGCTGGAATCAGCCGGAC 458
Query 488 GTTGCATCGGATTAGTGCGATAAGGAATCGGAAAGGAGAAATTATTGGATTAACTTGCCG 547
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 459 GTTGCATCGGATTAGTGCGATAAGGAATCGGAAGGGAGAAATTATTGGATTAACTTGCCG 518
Query 548 TGTTGGTCGATCTGTTAGAGGAAGCGCTAATTTGCTGCGTGATCTTGTTCAAGATGGGAA 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGTTGGTCGATCTGTTAGAGGAAGCGCTAATTTGCTGCGTGATCTTGTTCAAGATGGGAA 578
Query 608 CTCATTGTTGCTTATTGGTCCTCCAGGTGTGGGGAAAACTACAATGATTAGGGAGGTAGC 667
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 579 CTCATTGTTGCTTATTGGTCCACCAGGTGTGGGGAAAACTACAATGATTAGGGAGGTAGC 638
Query 668 ACGAATGCTAGGAAATGACTATGAGAAGAGAGTAATGATTGTTGATACTTCCAATGAGAT 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 ACGAATGCTAGGAAATGACTATGAGAAGAGAGTAATGATTGTTGATACTTCCAATGAGAT 698
Query 728 TGGTGGTGATGGTGATATACCTCATCCAGGGATCGGTAATGCTAGGCGGATGCAAGTCCC 787
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 TGGTGGGGATGGTGATATACCTCATCCAGGGATCGGTAATGCTAGGCGGATGCAAGTCCC 758
Query 788 TAACTCTGACATACAACACAAGGTGCTGATTGAGGCAGTAGAAAACCATATGCCCCAAGT 847
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 759 TAACTCTGACATACAACACAAGGTGCTGATAGAGGCAGTAGAAAACCATATGCCCCAAGT 818
Query 848 AATTGTGATTGATGAGATTGGAACTAAACTTGAAGCGATAGCTGCAAGTACTATAGCAGA 907
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 819 GATTGTGATTGATGAGATTGGAACTAAACTTGAAGCGATAGCTGCAAGTACAATAGCAGA 878
Query 908 ACGTGGAATCCAGTTAGTCGCCACTGCTCATGGAGCCACTATCGAGAATTTGATTAAGAA 967
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 879 ACGTGGAATCCAGTTAGTTGCCACTGCTCATGGAGCCACCATCGAGAATTTGATTAAGAA 938
Query 968 TCCTTCATTAGACCTTCTGGTTGGAGGTGTACAGAGTGTAACTCTTGGAGATGAGGAAGC 1027
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 939 TCCTTCATTAGACCTTCTGGTTGGAGGTGTACAGAGTGTGACTCTTGGAGATGAGGAAGC 998
Query 1028 GACCAGAAGAGGTGGCCAGAAGACTGTCCTTGAAAGAAAAGGTCCTTCAACATTTAACTG 1087
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 999 GACCAGAAGAGGTGGCCAGAAGACTGTCCTTGAAAGAAAAGGTCCTCCAACATTTAACTG 1058
Query 1088 TGGTGCAGAAATAGTTTCAAAGACTGAAGTTCGAGTTCATCGTAGTCTTGAAGCAACTGT 1147
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1059 TGGTGCAGAAATAGTTTCAAAGACTGAAGTTCGAGTTCATTGTAGTCTTGAAGCAACTGT 1118
Query 1148 TGATGCTATCCTCGCAGGTCGCTTACCAAACGTTGAAATCCGCAAAATAAAGTCTCATGG 1207
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 TGATGCTGTTCTCGCAGGTCGCTTACCAAACGTTGAAATCCGCAAAATAAAGTCTCATGG 1178
Query 1208 AGTGGAAGTGATTATGGAGAAGGAACCTTTCATCGACGAGAAGACTGTGGATAAGAAACA 1267
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1179 AGTGGAAGTGATTATGGAAAAGGAACCTTTCATCGACGAGACGACTGTGGATAAGAAACA 1238
Query 1268 TGAAGAGGAAACATTAGATGTTTCGAAGCTCACCAAGGAGGAAACTGTCTCTGAAGTCCT 1327
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||
Sbjct 1239 TGAAGAGGAAACATTAGATGTTTCGAAGCTCGCCAAGGAGGAAACTATCTCTGAAGTTCT 1298
Query 1328 TCAAACTAAGGAGATAACTGAAGCAGAATCTTCAGAGAAAGATACATTGATGTATCTATA 1387
|| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1299 TCCAACTAAGGAGATAACTGAAGCAGAATCTTCAGAGCAAGAGACATTGATGTATCTATA 1358
Query 1388 TGTCTATGGGATTGCAGAATCAACTGTTCTTCAGGCAATCAAACAACTAGAGATGGAAAC 1447
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1359 TGTCTATGGGATTGCAGAATCAACTGTTCTTCAGGCAATAAAACAACTGGAGATGGAAAC 1418
Query 1448 TGCGGTAGAGTTAACTGACGACATTAGTGAAGCAGAAGCCTTACTCGCGTTGCAAGCAAA 1507
||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||
Sbjct 1419 TGCAGTAGAGTTAACTGACGACATTAGCGAAGCAGAAGCCTTACTTGCATTGCAAGCGAA 1478
Query 1508 GATCAGGAAGAATCCCCGGATTAAATCATTTGCTACATCTCACGGTATACCTGTTTATGT 1567
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1479 GATCAGGAAGAATCCCCGGATTAAATCATTAGCTACATCTCACGGTATACCTGTTTATGT 1538
Query 1568 AACAAAGACTAACTCAGGTATCCAAGTGGCCAAGGCGATACGGGCATTACTAACAGATTA 1627
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 1539 AACAAAGACTAACTCAGGTATTCAAGTGGCCAAGGCGATACGGGCATTGCTAACCGATTA 1598
Query 1628 CGAAGACGGACTCGGAGAGTTTGGATCAGAAGATCGTCTAAAACTATCTGAAAAAATGGA 1687
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 CGAAGACAGACTCGGAGAGTTTGGATCAGAAGATCGTCTAAAACTATCTGAAAAAATGGA 1658
Query 1688 CGCCTTAGAAGAAGCGAGATTAGCGATAGAGCGGATAGTGATACCGAAAAAGGAAACAAC 1747
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1659 CGCCTTAGAGGAAGCGAGATTAGCGATAGAGCGGATAGTGATACCGAAAAAAGAAACAGC 1718
Query 1748 CGATTTACTCCCGAGGCCACCTAGGATTGTGTCTCTTCAAGGAAAGCTAGTCAGGAAGTA 1807
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1719 CGATTTACTCCCGAGGCCACCTAGGATTGTATCTCTTCAAGGAAAGCTAGTCAGGAAGTA 1778
Query 1808 TAATTTACGATCAGAAAGAAAATGGAGAGGGGATGAGATGTATCTACGGATTCTCCCTTA 1867
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1779 CAATTTACGATCAGAAAGAAAATGGAGAGGGGATGAGATGTATCTAAGGATCCTCCCTTA 1838
Query 1868 TAGCACGGAAGAAGATAGAGACGACCGTGAAGATGAAGGAGAGTTTGGAGAAGCGAACGG 1927
| | ||||||||||| |||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 1839 TGGGACGGAAGAAGACAGAGACGATGGTGAAGATGAAGGAGAGTTTGAAGAAGAGAACGG 1898
Query 1928 GGAAGAGCTTGACGAGTTAGGTT-TCGCCACCGGCGAGTCTAATGACTCACCCTCTGGCA 1986
|||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 1899 GGAAGAGCTTGACGAGTTCGGTTGT-GCCACCGGCGAGTCTAATGACTCACCCTCTGGCA 1957
Query 1987 TCGATAGGTTACCTCTATTGCCTGATTAG 2015
||||||||||||| ||||||||||| |||
Sbjct 1958 TCGATAGGTTACCCCTATTGCCTGACTAG 1986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78085002250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5