BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G73177.1

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926689 jgi|Araly1|926689|scaffold_202250.1                        167    7e-41


> Ahg926689 jgi|Araly1|926689|scaffold_202250.1
Length=333

 Score =  167 bits (90),  Expect = 7e-41
 Identities = 94/96 (98%), Gaps = 0/96 (0%)
 Strand=Plus/Plus

Query  72   CAAGCTCCAGTTTTTCGAATATGGCGGAAGTAAGTCTTGGTATGCTTATAGACATTGTGG  131
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  2    CAAGCTCCAGTTTTTCAAATATGGCGGAAGTAAGTCTTGGTATGCTTATAGACATTGTGG  61

Query  132  ACGAAGAGTGGATGAGGGACACTTTGCCTGATGATG  167
            |||| |||||||||||||||||||||||||||||||
Sbjct  62   ACGAGGAGTGGATGAGGGACACTTTGCCTGATGATG  97



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15567480312


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5