BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73180.1
Length=1912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476449 jgi|Araly1|476449|fgenesh2_kg.2__1579__AT1G73180.1 2750 0.0
> Ahg476449 jgi|Araly1|476449|fgenesh2_kg.2__1579__AT1G73180.1
Length=1861
Score = 2750 bits (1489), Expect = 0.0
Identities = 1714/1819 (94%), Gaps = 29/1819 (2%)
Strand=Plus/Plus
Query 94 CCGTCGATTACCGGATCGTCTCCGTTATTGCGTGCTTCATTTAGGTGTATCAAGTAAGCA 153
||| |||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||
Sbjct 63 CCGCCGATTACCGGATCGTCTCTGTTATTGCGTGCTTCTTTTAGGTGTCTCAAGTAAGCA 122
Query 154 ATGAGTTCTTCACCGTCGTTGGAGATTTTAGTTAGAGAAGCTGAAGGCTTCACTGTGTGG 213
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 123 ATGAGTTCTTCACCGTCGTTGGAGATTTTAGTTAGAGAAGCTGAAGGTTTCACTGTATGG 182
Query 214 AATGGTCCTCCATTTACTAATGGCCAGCCCACTCTCAAGCTTGAACGAGTTTCATGCTCT 273
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 183 AATGGTCCTCCATTCACTAATGGCCAGCCCACTCTCAAGCTTGAACGAGTTTCGTGTTCC 242
Query 274 AACACGAAGTTCAGTGTTGATGGATCGAAGTTAATGGCGATGAAATCTGATGGAGTTATT 333
||||| |||||||||||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct 243 AACACTAAGTTCAGTGTTGATGGATCCAAGTTAATGGCGATGAAATCAGATGGAATTATT 302
Query 334 AGTATCTATGATGCCACCAGCTTGACAGAAGTGCGGTCATTCACTATAGCAAATGTTACA 393
|||||||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||
Sbjct 303 AGTATCTATGATGCCACCAGCTTGACTGTAGTGCGGTCGTTCCCTATAGCAAATGTTACG 362
Query 394 GCTGCTGAGCTATCTCCATGTGGGACTTATCTTCAGACTTTTCAAAAACCCACTACTCCC 453
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GCTGCTGAGCTATCTCCATGTGGGACTTATCTTCAGACTTTTCAAAAACCCACTACTCCA 422
Query 454 CAAGAGAAGAATGTCTCCATTTGGAATACTGAGACAGGGGATCTAGCACACAGTCATTAC 513
|| || || || |||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 423 CAGGATAAAAACGTCTCCATTTGGAATATTGAGACTGGGGATCTAGCACACAGTCATTAC 482
Query 514 CAAAAATCCATTACTAAAGCCTCATGGCCATCAATTCGCTTCTGTCCTGATGAATCTTCT 573
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 483 CAAAAATCCATTACTAAAGCCTCGTGGCCATCAATTCGCTTCTGTCTTGATGAATCTTCT 542
Query 574 GCGTGCCGGTTAGCTACAAATGAGGTCCAATTCTTTGACCCGAAAGATTTCTCGAAAGGA 633
|| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 543 GCATGCCGGTTAGCTACAAATGAGATCCAATTCTTTGACCCGAAAGATTTCTCAAAAGGA 602
Query 634 ATAACATCCCGGATCAGAGTTCCTGGGATTGCTGCATTTGAGCTTTCTAAAACGCCAGCT 693
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 603 ATAACATCCCGGATCAGAGTTCCTGGGGTTGCTGCATTTGAGCTTTCTAAAACGCCAGCT 662
Query 694 TCCCATGTTGCTGTGTTTGTTCCAGAATCAAAGGGGAGTCCAGGCAGTGTCCAGATTTTT 753
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 663 TCCCATGTTGCTGTGTTTGTTCCAGAATCAAAGGGGAGTCCAGGCAGTGTCCAGATATTT 722
Query 754 GGATGTGGGGAAGAATTGCAGAGCCAGCCAAGTGCTCGACGTAGCTTTTTCCGATGTTCC 813
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 723 GGATGTGGGGAAGGATTGCAGAGTCAGCCAAGTGCTCGACGTAGCTTTTTCCGATGTTCT 782
Query 814 TCTGTGCAGTTTAGTTGGAACCATGGTTCCACTGGACTCCTAGTGGTTGTACAATCAGAT 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TCTGTGCAGTTTAGTTGGAACCATGGTTCCACTGGACTCCTAGTGGTTGTACAATCAGAT 842
Query 874 GTTGACAAGACCAACCAAAGTTACTATGGGGAAACGAAGCTACACTACCTTACAATAGAC 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GTTGACAAGACCAACCAAAGTTACTATGGGGAAACGAAGCTACACTACCTTACAATAGAC 902
Query 934 GGCACACATGAGGGCCTTGTTCCATTACGTAAAGAAGGACCAGTTCATGATGTTCAGTGG 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GGCACACATGAGGGCCTTGTTCCATTACGTAAAGAAGGACCAGTTCATGATGTTCAGTGG 962
Query 994 TCCTTTTCGGGTTCAGAGTTTGCTGTTGTATATGGCTTTATGCCTGCTTGTGTGACAATC 1053
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 963 TCCTTTTCGGGCTCAGAGTTTGCAGTTGTATATGGCTTTATGCCTGCTTGTGTGACAATC 1022
Query 1054 TTTGACAAGAATTGTAAACCATTGATGGAACTTGGCGAAGGTCCTTATAACACTCTTCGA 1113
|||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1023 TTTGACAAGAATTGCAAACCCTTGATGGAAATTGGCGAAGGTCCTTATAACACTCTTCGA 1082
Query 1114 TGGAACCCAAAAGGGAGAGTTTTATGTGTGGCTGGATTCGGTAACTTGCCTGGTGATATG 1173
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1083 TGGAACCCAAAAGGGAGAGTTTTATGTGTGGCTGGATTCGGTAACTTACCTGGTGATATG 1142
Query 1174 GCCTTCTGGGATGTTGTAAATAAGAAGCAGCTAGGAAGTAATAAAGCCGAGTGGTCTGTG 1233
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1143 GCCTTCTGGGATGTTGTCAACAAGAAGCAGCTAGGAAGTAATAAAGCCGAGTGGTCTGTG 1202
Query 1234 ACAAGTGAATGGTCTCCAGACGGGCGTTATTTCTTGACTGCCTCAACAGCACCAAGACGT 1293
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1203 ACAAGTGAATGGTCTCCAGATGGGCGTTATTTCTTGACTGCCTCAACTGCACCAAGACGT 1262
Query 1294 CAAATTGACAATGGGATGAAAATCTTCAACTACGACGGAAAGCGTTA-TTATAAGAAGAT 1352
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1263 CAAATTGACAATGGGATGAAAATCTTCAACTACGACGGAAAGCGTTACTT-TAAGAAGAT 1321
Query 1353 GTTTGAGAGGCTGTATCAGGCTGAATGGAAACCAGAGTCTCCAGAGAGGTTCGGTGACAT 1412
|||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| ||
Sbjct 1322 GTTTGAGAGGCTGTATCAGGCTGAGTGGAAACCAGAGTCTCCGGACAGGTTCGGTGATAT 1381
Query 1413 CAGTGAACTTATCAAGTCAGTTGAATCATTGAAACTCGGCGAGGGCAAATCGCAAGGACA 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 CAGTGAACTTATCAAGTCAGTTGAATCATTGAAACTCGGCGAGGGCAAATCGCAAGGACA 1441
Query 1473 AGGATCAGCTCAGAAGAAAACTATTGCCCCCAATCCTATTGCACAGAAACCGGCCGCATA 1532
|||||| |||||||||||| ||||||| ||||| ||||||||||| |||||||| |||||
Sbjct 1442 AGGATCGGCTCAGAAGAAAGCTATTGCTCCCAACCCTATTGCACAAAAACCGGCTGCATA 1501
Query 1533 TCGACCTCCGCATGCTAAGCATGCAGCTGCTGTTCAAGCCGAGTTACTTGGAATAAGCAC 1592
||||||||||||||||||||| ||||||||||||||||| ||||| |||||| |||||||
Sbjct 1502 TCGACCTCCGCATGCTAAGCACGCAGCTGCTGTTCAAGCTGAGTTGCTTGGAGTAAGCAC 1561
Query 1593 AACAGGAGAGATGAGCAAGAACGCTCTTAAAAACAAGAAGAAGAGGGAGAATAAGAAAGC 1652
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1562 AGCAGGAGAGATGAGCAAGAACGCTCTTAAAAACAAGAAGAAGAGGGAGAAGAAGAAAGC 1621
Query 1653 GGCTGCGGCTGCGGCTGCTGCTTCTGGATCTAACAACGCCTGATTGAAGAAA-TCAC-AC 1710
|| | |||||| ||||||||||||| ||||| ||||||| ||| ||| |||| ||
Sbjct 1622 AGCCGAGGCTGC---TGCTGCTTCTGGAGCTAAC---GCCTGATCGAA-AAAGTCACCAC 1674
Query 1711 TCCGATATCAAATTCAATGGAGATCACAGTTTTGAAATTCATTTGATGGTAATAAAGATT 1770
||| |||||||||||||||| |||||||||||||| |||| |||||||||||||||||||
Sbjct 1675 TCCTATATCAAATTCAATGGCGATCACAGTTTTGAGATTCCTTTGATGGTAATAAAGATT 1734
Query 1771 CTATAGAAGA--CAGAAAACATTATGTAAACAGTTGtttttt-ttttGTCAAACATTTTT 1827
|||||||| | |||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1735 CTATAGAAAAGGCAGAAAGCATTATGTAAACAGTTGTTTTTCATTTTGTCAAACATTTTT 1794
Query 1828 GTTGTCAGTTA--C-CCGCCAAAATCATTTGAAGCCTAAGAAGAAAGAAGCCGAAATTTT 1884
|||||||||| | |||||||||||| |||| || | | || |||||||||||
Sbjct 1795 GTTGTCAGTTGTTCACCGCCAAAATCA---GAAG---AA-A-G---GA-GCCGAAATTTT 1842
Query 1885 ACCAGGTTAAAAGTGAAAA 1903
| |||||||||||||||||
Sbjct 1843 AGCAGGTTAAAAGTGAAAA 1861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71838202070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5