BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73190.1
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476450 jgi|Araly1|476450|fgenesh2_kg.2__1580__AT1G73190.1 1509 0.0
> Ahg476450 jgi|Araly1|476450|fgenesh2_kg.2__1580__AT1G73190.1
Length=1105
Score = 1509 bits (817), Expect = 0.0
Identities = 917/965 (95%), Gaps = 8/965 (1%)
Strand=Plus/Plus
Query 200 TGTTTGATCATAATGGCAACATCAGCTCGTAGAGCATACGGTTTCGGTAGAGCCGATGAG 259
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 TGTTTGATCAT-ATGGCAACATCAGCTCGTAGAGCATACGGTTTCGGTAGAGCCGATGAG 203
Query 260 GCTACACACCCTGACTCCATTAGAGCAACTTTAGCTGAGTTTCTCTCCACTTTTGTCTTC 319
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 204 GCTACACACCCTGACTCCATTAGAGCAACTTTAGCTGAGTTCCTCTCCACTTTTGTCTTC 263
Query 320 GTCTTTGCAGCTGAAGGCTCTATCCTCTCTCTCGATAAGTTGTATTGGGAACATGCGGCT 379
||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 264 GTCTTTGCAGCTGAAGGCTCTATTCTCTCCCTCGATAAGTTGTATTGGGACCATGCGGCT 323
Query 380 CATGCGGGGACAAACACACCAGGAGGGCTGATTTTAGTAGCGTTGGCTCATGCGTTTGCT 439
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 324 CATGCGGGGACAAACACACCAGGAGGACTGATTTTAGTGGCCTTGGCTCATGCGTTTGCT 383
Query 440 CTGTTTGCTGCTGTTTCAGCAGCCATTAATGTCTCCGGCGGACACGTTAACCCGGCAGTC 499
|||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||||
Sbjct 384 CTGTTTGCTGCTGTTTCAGCAGCCATCAATGTCTCGGGTGGACACGTAAACCCGGCAGTC 443
Query 500 ACTTTTGGTGCTCTTGTTGGAGGCAGAGT-TACAGCGATCCGCGCCATCTACTACTGGAT 558
||||||||||||||| ||||||||||| | | |||||||||| ||||||||||| ||| |
Sbjct 444 ACTTTTGGTGCTCTTATTGGAGGCAGACTCT-CAGCGATCCGTGCCATCTACTATTGGGT 502
Query 559 CGCTCAGCTTCTTGGAGCCATCCTCGCTTGTCTCTTGTTAAGGCTCACAACAAACGGCAT 618
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 503 CGCTCAGCTTCTTGGAGCCATCCTCGCTTGTCTCTTGTTAAGACTCGCAACAAACGGCAT 562
Query 619 GAGACCAGTTGGTTTCCGTCTAGCATCAGGTGTTGGAGCGGTTAATGGACTTGTATTAGA 678
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 563 GAGACCAGTTGGTTTCCGTGTAGCATCAGGTGTTGGAGCGGTTAATGGACTTGTATTAGA 622
Query 679 GATCATTTTAACATTTGGCTTAGTCTACGTAGTGTATTCCACTTTGATTGATCCAAAACG 738
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||
Sbjct 623 GATCATTTTAACATTTGGCTTAGTGTACGTCGTGTATTCGACTTTGATTGATCCAAAGCG 682
Query 739 TGGAAGCCTCGGGATCATAGCACCGCTTGCAATCGGACTCATAGTTGGGGCAAACATCTT 798
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 683 TGGAAGCCTCGGGATCATAGCACCACTTGCAATCGGACTCATAGTTGGGGCAAACATCTT 742
Query 799 AGTAGGTGGACCATTTTCTGGTGCTTCGATGAATCCAGCTAGAGCTTTTGGTCCAGCGTT 858
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 743 AGTAGGTGGACCATTTTCTGGTGCTTCGATGAATCCAGCTAGAGCCTTTGGTCCAGCATT 802
Query 859 GGTGGGATGGAGATGGCATGACCACTGGATCTATTGGGTCGGACCATTCATCGGTAGTGC 918
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 803 GGTGGGATGGAGATGGCATGACCACTGGATCTACTGGGTCGGGCCATTCATCGGTAGTGC 862
Query 919 TTTAGCCGCCCTTATATATGAGTACATGGTCATACCCACCGAACCACCTACCCACCACGC 978
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 863 TTTAGCCGCTCTTATATATGAGTACATGGTCATACCCACCGAACCACCTACCCACCACAC 922
Query 979 ACATGGTGTACACCAGCCCTTGGCCCCTGAAGATTACTAGATGGAACTTTCCTCATGTCA 1038
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 923 ACATGGTGTACACCAGCCCTTGGCTCCTGAAGATTACTAGATGGAACTTTCCTCATTTCA 982
Query 1039 CCACTGCTTTTGTTCGTTGTTCAAGCTCTCTTTGTCTGTATGATGAGATCACTTGCATAG 1098
|||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 983 CCACTGCTTTTGTTAGTTGTTCAAGCTCACTTTGTCTGTATGATGAAATCACTTGCATAG 1042
Query 1099 ATACtttttttCTTATGCTACTCTTA-T--GTTGTAATAATAAAAAATAAAGAACGATTT 1155
||||||| ||| | ||||||||||| | ||||||||||||| || ||||||| |||||
Sbjct 1043 ATACTTTGTTT-TGATGCTACTCTTTGTTTGTTGTAATAATAAGAA-TAAAGAAGGATTT 1100
Query 1156 CGCAA 1160
|||||
Sbjct 1101 CGCAA 1105
Score = 220 bits (119), Expect = 1e-56
Identities = 126/129 (98%), Gaps = 1/129 (1%)
Strand=Plus/Plus
Query 30 AACATCTAAGTTATGGTTAAGTAATTGCATGCAATTTAAAGCTACGTGTCCAGCTTAAGA 89
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 17 AAC-TCTAAGTTATGGTTAAGTAATTGCATGCAATTTAAAGCTACGTGTCCTGCTTAAGA 75
Query 90 CACTCAAGTCTCACATCTGTCCctttttacttcgacttcgcttcttttggtttcttttaa 149
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 76 CACTCAAGTCTCACATCTGTCCCTTTTTACTTCGACTTCGCTTCTTTTGGCTTCTTTTAA 135
Query 150 actctctct 158
|||||||||
Sbjct 136 ACTCTCTCT 144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43993846218
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5