BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73200.1
Length=2485
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926692 jgi|Araly1|926692|scaffold_202253.1 3648 0.0
Ahg920705 jgi|Araly1|920705|scaffold_101986.1 119 1e-25
> Ahg926692 jgi|Araly1|926692|scaffold_202253.1
Length=2381
Score = 3648 bits (1975), Expect = 0.0
Identities = 2224/2346 (95%), Gaps = 10/2346 (0%)
Strand=Plus/Plus
Query 145 GATGGTTTCGTTTACGGGTTTCGCTTTCGTATTTGGAATTCTACTTGGGATTCTTGCGAT 204
||||||||||||| |||||||||| ||| ||| |||||||||||| ||||||||||||||
Sbjct 20 GATGGTTTCGTTTGCGGGTTTCGCGTTCTTATCTGGAATTCTACTGGGGATTCTTGCGAT 79
Query 205 CGTTACGGCGGAAGTTGTAGGGTTTTTGTATCTTCTGAAGCGATTGAATCGGAAAAGAGA 264
|||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| |
Sbjct 80 CGTTACGGCGGAAGTTATAGGGTTTTTGTATATTCTGAAGCGATTGAATCGGAAGAGAAA 139
Query 265 TCGTCAGGAATCGAATTCGAGTTCTGATCCAAACTTCAAGAGTTTTGATCCTCGCCAATC 324
|| ||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| ||
Sbjct 140 TCATCAAGAATCGAATTCGAGTTCTGATTCAAACTTCAAGAATTTTGATCCTCGCCAGTC 199
Query 325 CATTGATTTTAGTCTCAACAAACAGGGAGTGATCTGGATATTGGAATTAGATGAAAATGT 384
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 200 CATTGATTTTAGTCTCAACAAACAGGGAGTGATCTGGATTTTGGAATTAGATGAAAATGT 259
Query 385 AAAAGATTGGATGAAGGAGAAATTACCAAAAGAGCAAAAGAAGAAGAGAGTAGATCTCTT 444
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 260 AAAAGATTGGATGAAGGAGAAATTACCAACAGAGCAAAAGAAGAAGAGAGTTGATCTCTT 319
Query 445 GGAGGTACATCCAGTTAGGAGATTTGCTCGCATCAAAGATCATAAGCTCATCTTGTCTGA 504
|||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||
Sbjct 320 GGAGGTACATCCAGTTAGGAGATTTGCTCGTATCAAAGACCATAAGCTCTTCTTGTCAGA 379
Query 505 TTCATTAGATGGCCCTCAGACTCCTATTACTTTGAAAGGTTGCTTTGTTGACGCTGTTTC 564
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TTCATTAGATGGCACTCAGACTCCTATTACTTTGAAAGGTTGCTTTGTTGACGCTGTTTC 439
Query 565 AGGCTCTGGACCAACAAGGAAATGGGCTAAAAGATTTCCTATACAAGTAGAAAGCAAAAC 624
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 440 AGGCTCTGGACCGACTAGGAAATGGGCTAAAAGATTTCCGATACAAGTAGAAAGCAAAAC 499
Query 625 TTCTGTCTTGTATAAAGGAAACAGAGTGTTTTACATTTTCTTAGAGACTTCTTGGGAGAA 684
||| |||||||| || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 500 TTCGGTCTTGTACAAGGGAAACCGAGTGTTTTACATTTTCTTAGAGACTTCTTGGGAGAA 559
Query 685 GGAGTCATGGTGTAAAGCTCTTCGTCTTGCTGCTTGCGAGAATCAGGAAAGGTTTATTTG 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 GGAGTCATGGTGTAAAGCTCTTCGTCTTGCTGCTTGCGAGAATCAGGAAAGGTTTATTTG 619
Query 745 GTCCACCAAATTGAAAGAAGATTTCCGGAACTATCTGGCTTCCCTTAATGCTGCCTATCC 804
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 620 GTCCACCAAATTGAAAGAGGATTTCCGTAACTATCTGGCTTCCCTTAATGCTGCCTATCC 679
Query 805 TTCTTTTATGAAACCATCAGCTGGGTTTAGTTTTGAGTCATTGGACAAGGGGCTTAAAGC 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 TTCTTTTATGAAACCATCAGCTGGGTTTAGTTTTGAGTCATTGGACAAGGGGCTTAAAGC 739
Query 865 AGATGGTCCTTCATCAAAGGTTCGT-TTGATCTGGAAGAAATTTTCGAAAAAGTGCTCAA 923
|||||||||||||||||||||||| || |||||||||| ||||| |||||||||||||
Sbjct 740 GGATGGTCCTTCATCAAAGGTTCGTCTT-TTCTGGAAGAAGTTTTCAAAAAAGTGCTCAA 798
Query 924 CTAAAGTGAATTTTCCCCCGTCGATTCGTGACGACAAGAAGACTTCATCCCGTTCTTACC 983
||||||||||||| |||||||| || ||||| |||||||| |||||| ||||||||||||
Sbjct 799 CTAAAGTGAATTTGCCCCCGTCTATACGTGAAGACAAGAAAACTTCAACCCGTTCTTACC 858
Query 984 AAGATTCACAATCTACTGGTAGCTCTGGAAAGAGTACCTCAGCAAGGAGGATGCAAGATA 1043
|||||||||| ||||||||||||||||||| ||||||| ||||||||| |||||||||||
Sbjct 859 AAGATTCACAGTCTACTGGTAGCTCTGGAAGGAGTACCCCAGCAAGGAAGATGCAAGATA 918
Query 1044 ACATCCCGGAGGAAACTGATGTCCAAGTTATCTCACGTTCTTGGAGCCATAGCAGTCATG 1103
||||||| |||||||| |||||||||||| |||||||| | |||||||||||||||||||
Sbjct 919 ACATCCCTGAGGAAACCGATGTCCAAGTTTTCTCACGTACCTGGAGCCATAGCAGTCATG 978
Query 1104 CATCAGATGTAGATTCAGAAGACAAGTCTTTTGATGAAGGAACATTGGCATTGAACGTAG 1163
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 CATCAGATGTTGATTCAGAAGACAAGTCTTTTGATGAAGGAACATTGGCATTGAACGTAC 1038
Query 1164 T-ATTATCTCGGCTGTTTTTTGATGTTAAACAGAACACAGTACTGAAGAATTT-AGTGCG 1221
| ||| |||||||||||||||||||| |||||||||||||| ||||||||||| | ||||
Sbjct 1039 TAATT-TCTCGGCTGTTTTTTGATGTCAAACAGAACACAGTGCTGAAGAATTTCA-TGCG 1096
Query 1222 CGAACGAATCCAGCGGATAATGTCCAACATGAGAATTCCCAGCTACATAGGCGAATTAAT 1281
|||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||
Sbjct 1097 CGAACGAATCCAGCGGATAATGTCCAACATGAGAGTTCCCAGCTACATAGGTGATTTAAT 1156
Query 1282 CTGCTGTGACGTAGACATTGGAAATCTCCCGCCTTACATACACGGTACGAGAATTCTTCC 1341
||||||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1157 CTGCTGTGATGTGGACATTGGAAATCTCCCGCCTTATATACACGGTACAAGAATTCTTCC 1216
Query 1342 AATGGAGATGAATGGTGTGTGGGCGTTCGAAATAGATATTGAATACACTGGTGGTGCGGG 1401
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1217 AATGGAGATGAATGGTGTGTGGGCATTCGAAATAGATATTGAATACACTGGTGGTGCGGG 1276
Query 1402 ACTTGAAGTTGAAACTCGGGTTGATGCTCGAGAGGAAGATTTGCAGAAAGGCATAGCTGA 1461
||||||||||||||||||||||||||| ||||| |||||| || ||||||||||||||||
Sbjct 1277 ACTTGAAGTTGAAACTCGGGTTGATGCGCGAGAAGAAGATCTGGAGAAAGGCATAGCTGA 1336
Query 1462 GGGAAAGTTGCAGCCAAATTCTGCTGGGGATGTTCCACCAGATCTCCTTGAAGGTCTTGC 1521
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1337 GGGAAAGTTGCAGCCAAATTCTGCTGGGGATGTTCCACCAGATCTCCTTGAAGATCTTGT 1396
Query 1522 AGATTTTGAAAAGCAATTAAATGTTCCCGGAGGAACTGTTGATGCACAAGATGTGAAAAG 1581
|||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct 1397 AGATTTTGAAAAGCAATTAAATGTCCCCGGTGGAACTGCTGATGCACAAGATGTGAAAAG 1456
Query 1582 TGGTGGAACTGATAAAGCTGATGAATCGAAGGGTCCAAAAGGTACAAAAACAGGTTCGAG 1641
|||| |||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1457 TGGTCGAACCGATAAAGCTGATGAATCTAAGGGTCCAAAAGGTACAAAAGCAGGTTCGAG 1516
Query 1642 CAATGGATCCAAGTGGAAGTCTATGCTGAAGAACATCGTTGAACAAGTTTCCCAGGTCCC 1701
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1517 CAATGGATCCAAGTGGAAGTCTATTCTGAAGAACATCGCTGAACAAGTTTCCCAGGTCCC 1576
Query 1702 AATTACTTTGTCTATAGGGGTGTCTTCGCTTCGAGGGACACTGTGTGTACACATGAAGCC 1761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 AATTACTTTGTCTATAGGGGTGTCTTCGCTTCGAGGGACACTGTGTGTACACATGAAGCC 1636
Query 1762 GCCTCCATCTGATCAACTGTGGTTTGGCTTCACAAGCATGCCTGATATTGAATTCAACCT 1821
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1637 GCCTCCATCTGATCAACTGTGGTTTGGCTTCACAAGCATGCCCGACATTGAATTCAACCT 1696
Query 1822 TGTCTCTTCTGTTGGTGAACACAAAATCACAAACAGCCATGTTGCTATGTTCTTGGTCAA 1881
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1697 TGTCTCTTCTGTTGGTGAACACAAAATCACAAACAGCCATGTTGCTATGTTTTTGGTCAA 1756
Query 1882 CCGGTTCAAGACGGCGATACGAGACGTCATGGTGCTCCCCAATTGTGAAAGCGTTACCAT 1941
|||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1757 CCGGTTTAAGACGTCGATACGAGACGTCATGGTGCTCCCCAATTGTGAAAGCATTACCAT 1816
Query 1942 TCCTTGGATGACAGCTGAAAAGGATGATTGGGTCGAACGCAATGTCGCTCCATTCATGTG 2001
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1817 TCCTTGGATGACAGCTGAAAGGGATGATTGGGTCGAACGCAATGTAGCTCCATTCATGTG 1876
Query 2002 GCTGAATCAAGACTCCACCAGTGATCGCGAAAA-TTTGGAAGCTGCAGAAGCGAAATCTA 2060
||||||||||||| | |||||||||| ||| | |||| |||||||||||||||||||||
Sbjct 1877 GCTGAATCAAGACACGACCAGTGATCACGACAGCTTTG-AAGCTGCAGAAGCGAAATCTA 1935
Query 2061 AAGCTGACAAGCCACCGACTTCTGAACAAATGCAGAAAACTGTCAACATCCCGCAGAAGC 2120
|||||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1936 AAGCTGACAAACCACCAACTTCTGAACAAATGCAGAAAACTGTCATCGTCCCGCAGAAGC 1995
Query 2121 CTAGAATTGAGGAAGAATCTGTGTCGGCTGACACTGCACCATCAGCTAATTCCATAGCTC 2180
||||||||||||||||||||||||| || ||||||||||||||||||||||||| || ||
Sbjct 1996 CTAGAATTGAGGAAGAATCTGTGTCTGCGGACACTGCACCATCAGCTAATTCCACAGGTC 2055
Query 2181 TCCTAGTAGAGAGTGACAAATCCTTAGAAGAACTCAAGACTCCACTGCTGGAAAGCAGCG 2240
| |||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 2056 TTATAGTAGAGAGTGACAAATCCTTGGAAGAACTCAAGACCCCGCTGCTGGAAAGCAGCG 2115
Query 2241 AAAAGCATGATACAATAGCGAGAGGAGGCAGTGCGGGAGATAT-AATTCCGGGTATTGGT 2299
||||||||||||| |||||| |||||||||||||||||||||| ||| |||||||||| |
Sbjct 2116 AAAAGCATGATACGATAGCGCGAGGAGGCAGTGCGGGAGATATTAAT-CCGGGTATTGTT 2174
Query 2300 CAATCACCGTCTATGTCGACTGTTTCGGGTGAAGAGGATGATTCAAATTCAAAAGGAAAG 2359
||||||||||||| ||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 2175 CAATCACCGTCTAGGTCGACTGTTTCGAGCGAAGAGGATGATTCAAATTCGAAAGGAAAG 2234
Query 2360 AAAATGGGGGCAGCAAAGGCGAGGATGTTCGATTTTAGGAAGAAAGTGGGAGAGAAGTTT 2419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2235 AAAATGGGGACAGCAAAGGCGAGGATGTTCGATTTTAGGAAGAAAGTGGGAGAGAAGTTT 2294
Query 2420 GAAGAGAAGAAACGTCACGTTGAGGAAAAAAGTAGACAGATTGTTGAAAAGATGAGAGGA 2479
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2295 GAAGAGAAGAAACGTCACGTTGAGGAAAAAAGTAGACAAATTGTTGAAAAGATGAGAGGA 2354
Query 2480 CCTTGA 2485
||||||
Sbjct 2355 CCTTGA 2360
> Ahg920705 jgi|Araly1|920705|scaffold_101986.1
Length=2435
Score = 119 bits (64), Expect = 1e-25
Identities = 90/103 (87%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 2381 AGGATGTTCGATTTTAGGAAGAAAGTGGGAGAGAAGTTTGAAGAGAAGAAACGTCACGTT 2440
|||||||| ||| || |||| ||| |||| |||||||| || ||||||| |||||| |
Sbjct 2307 AGGATGTTAGATCTTGGGAAAAAAATGGGGGAGAAGTTGGAGGAGAAGAGGCGTCACATG 2366
Query 2441 GAGGAAAAAAGTAGACAGATTGTTGAAAAGATGAGAGGACCTT 2483
|||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2367 GAGGAAAAGAGTAGACAGATTGTTGAAAAGATGAGAGGACCTT 2409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93663912455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5