BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73210.1
Length=1814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476452 jgi|Araly1|476452|fgenesh2_kg.2__1582__AT1G73210.1 2056 0.0
> Ahg476452 jgi|Araly1|476452|fgenesh2_kg.2__1582__AT1G73210.1
Length=1762
Score = 2056 bits (1113), Expect = 0.0
Identities = 1379/1499 (92%), Gaps = 52/1499 (3%)
Strand=Plus/Plus
Query 6 agaaagagaaagagaagaagCGTTTCGTCCTCTTCGTTTCCTTCTTCCATTAATACAAAG 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AGAAAGAGAAAGAGAAGAAGCGTTTCGTCCTCTTCGTTTCCTTCTTCCATTAATACAAAG 61
Query 66 CAAATCCTACTCTGAAAGCTTCTTTATTCAACCTCTCTACTTCAGTTTCTCTGTCCCCAT 125
|||||||||||| ||||| |||||||||| |||||||||||||||||| |||||||||
Sbjct 62 CAAATCCTACTCAGAAAG---CTTTATTCAATCTCTCTACTTCAGTTTCTGTGTCCCCAT 118
Query 126 TTTTCATCTGAGAGTTAAAACTGTAACCTCAAAATCTGAG-ATAAAGTCaaaaaaaaaaC 184
|||||||| ||||||| ||||| ||||||||||||||| | || |||| |||||| ||
Sbjct 119 TTTTCATCAGAGAGTT-AAACTTTAACCTCAAAATCTGGGAAT-AAGT--AAAAAAGAA- 173
Query 185 CCCAGTTTATGATTCTCATTTTCTCTTTATAATCGAAAGCTTCGATTTTTAACAA-AACC 243
|||||||| ||||| |||||||| ||||||||||||||| |||||||||||| || | ||
Sbjct 174 CCCAGTTTCTGATTATCATTTTCCCTTTATAATCGAAAGTTTCGATTTTTAAGAAGACCC 233
Query 244 CAGAATCTGTGTTCTTGtttttttttttttttggtgagagttatcttttttttt------ 297
||||| ||||||||||| |||||| ||||||||||| ||||||||||||
Sbjct 234 CAGAAGCTGTGTTCTTG-----ATTTTTTCTTGGTGAGAGTAATCTTTTTTTTTGGGAGG 288
Query 298 -ttt----GG--AATATTGGGTGAGAATCTGAGTAATGGGATTTACATAAAAAGATTCTA 350
||| || |||||||||||||||||||||| |||||||||||||||| ||| |
Sbjct 289 GTTTAAAGGGAAAATATTGGGTGAGAATCTGAGTGTTGGGATTTACATAAAACGATAAAA 348
Query 351 TGTAAATACTAAAATAA-TCTGGAAATTATTAAATTTCCAAACTTTGTGTTCCATTTTGT 409
| ||| | | | || | ||||||||||||||||||||||||||||||||||| ||
Sbjct 349 AGGAAAGA-GGAGAGAAGACCAGAAATTATTAAATTTCCAAACTTTGTGTTCCATTTCGT 407
Query 410 GGACTCAAATTTGTTTATAAAGATCTC-AAATCagagagattgagacgaccaagaacaag 468
||||||||||||||||||||||||||| |||||||||||||| || | ||| ||
Sbjct 408 GGACTCAAATTTGTTTATAAAGATCTCAAAATCAGAGAGATT--GA-G---AAG-AC--- 457
Query 469 cagaagaagaagaagaattgagagaaTGTGGTGGTGGTCTTCTTCAACTAAAGGTCGTTC 528
| ||||||||| | ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 458 C--AAGAAGAAG--G-ATTGAGAGAATGTGGTGGTGGTCTTCTTCCACAAAAGGTCGTTC 512
Query 529 GAATCTGGAGAGGTTTCTTTTAGGAATCACTCCTAAGCCTCCTTCCTTCTCTCTTCCTCA 588
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 513 GAATCTGGAGAGGTTTCTTTTAGGAATCACTCCTAAGCCTCCTTCGTTCTCTCATCCTCA 572
Query 589 GGAACAGGGAAAGGAGGAGATTGAGTATTTCAGGCTTGGTGATCTCTGGGATTGTTATGA 648
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 573 GGAACAGGGAAAGGAGGAGATTGAGTATTTCAGGCTTGGTGATCTTTGGGATTGTTATGA 632
Query 649 TGAGATGAGTGCGTATGGCTTTGGCACACAGGTTGATTTAAACAATGGCGAAACCGTTAT 708
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 633 TGAGATGAGTGCGTATGGCTTTGGAACACAGGTTGATTTAAGCAATGGCGAAACCGTTAT 692
Query 709 GCAGTACTACGTCCCGTACCTATCCGCTATCCAAATCCACACTAACAAACCCGCCTTGCT 768
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 693 GCAGTACTATGTCCCGTACCTATCCGCCATCCAAATCCACACTAACAAACCCGCCTTGAT 752
Query 769 TTCCAGGAACCAGAATGAGGTGGCTGAATCTGAGAGTAGCGAGGGTTGGAGCGATAGTGA 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 TTCCAGGAACCAGAATGAGGTGGCTGAATCTGAGAGTAGCGAGGGTTGGAGCGATAGTGA 812
Query 829 GAGTGAAAAGTTGTTGTCAAGGTCAATGAGCAATGATTCAAGCAAAACATGGGATGCTGT 888
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 813 GAGTGAAAAGTTGTTGTCAAGGTCATTGAGCAATGATTCGAGCAAAACATGGGATGCTGT 872
Query 889 CTCTGAAGATTCGGTTTTCGATCCGGATGGTTCACCGTTGCTGAAAGATAGACTTGGTAA 948
||||||||||||||||||||||||||||||| | || ||||||||||| |||||||||
Sbjct 873 CTCTGAAGATTCGGTTTTCGATCCGGATGGTACGCCATTGCTGAAAGAGAGACTTGGTTG 932
Query 949 CCTTGACTTTAAGTACATTGAAAGAGATCCTCCGCACAAGCGGATTCCCTTAACCGACAA 1008
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 933 CCTTGACTTTAAGTACATTGAAAGGGATCCTCCGCACAAGCGGATTCCCTTAACCGACAA 992
Query 1009 GATAAACGTATTGGTGGAGAAATATCCGGGACTCATGACCTTAAGGAGTGTCGACATGTC 1068
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 993 GATAAACGTATTGGTGGAGAAATATCCAGGACTCATGACCTTAAGGAGTGTCGACATGTC 1052
Query 1069 TCCTGCAAGTTGGATGGCTGTTGCGTGGTACCCGATATACCACATCCCAACCTGCAGGAA 1128
||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 1053 TCCTGCAAGTTGGATGGCTGTTGCGTGGTACCCGATATATCAGATCCCAACCTGCAGAAA 1112
Query 1129 CGAGAAAGATTTGACGACAGGCTTCCTAACTTATCATACTCTATCTTCGTCTTTTCAAGA 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 CGAGAAAGATTTGACGACAGGCTTCCTAACTTATCATACTCTATCTTCGTCTTTTCAAGA 1172
Query 1189 TAATGTGGTGGAAGGAGATCAAAGCAACAACA-A-----TGAAGAAACAGAGTTTTGTGA 1242
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1173 TAATGTGGTGGAAGGAGATCAAAGCAACAACACAGGCAATGAAGAAACAGAGTTTTGTGA 1232
Query 1243 AGATTCCGTAATAAACAAGAGAATGCCATTGCCTCCGTTTGGTGTAACAACTTACAAAAT 1302
|||||| || |||||||||||||| ||||||||||| ||||||||| |||||||||||||
Sbjct 1233 AGATTCTGTTATAAACAAGAGAATCCCATTGCCTCCATTTGGTGTAGCAACTTACAAAAT 1292
Query 1303 GCAAGGAGATCTTTGGGGGAAGACGGGGTTTGACCAGGACCGGTTGCTTTATCTTCAAAG 1362
|||||||||||||||||||| |||||| |||||||| ||||||||| |||||||||||||
Sbjct 1293 GCAAGGAGATCTTTGGGGGATGACGGGATTTGACCAAGACCGGTTGGTTTATCTTCAAAG 1352
Query 1363 CGCTGCGGATTCATGGCTGAAACAGCTCAATGTTGATCACCATGACTATAACTTCTTCCT 1422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 CGCTGCGGATTCATGGCTGAAACAGCTCAATGTTGATCACCATGACTATAACTTCTTCCT 1412
Query 1423 TAACTCGAGCTTCTAAAGATCAATCGGGTCGTTCGTATGTTTATCCTTCTCCAAACCTT 1481
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 AAACTCAAGCTTCTAAAGATCAATCGGGTCGTTCGTATGTTTATCCTTCTCCAAACCTT 1471
Score = 357 bits (193), Expect = 2e-97
Identities = 279/316 (88%), Gaps = 24/316 (8%)
Strand=Plus/Plus
Query 1504 AACCctttttctttgttgttttc--aagctccttttgtttctctgtgttttttgttcttt 1561
|||| |||||||||||||||||| || |||| ||| ||||| || |||| |||
Sbjct 1466 AACCTTTTTTCTTTGTTGTTTTCAAAAACTCC-TTTCCTTCTC--TG-----TGTT-TTT 1516
Query 1562 ttgtttttgtctggctcgttgtgttgttttAGGTAGCAACCGCC---ATCGCGGAGTTTT 1618
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1517 TTATTTTTGTCTGGCTCGTTGTGTTGTTTTAGGTAGCAACCGCCGCCATCGCGGAGTTTT 1576
Query 1619 TTCTCCTTTTGCAAGCCAATCATGGAAGTTTCTAAGAAGAAAACAGAGCttttttttctt 1678
||| ||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1577 TTCCCCTGTTGCAAGCCCATCATGGAAGTTTCTAAGAAGAAAACAGAGCTTCTTTTT-TT 1635
Query 1679 tttttttAACGGTGTTGAGAAAACAAGAAAGTTGTTTTCTTTTCTTGGGTGAGAGATCAT 1738
||| | |||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1636 TTTC---A-CGGTGTTGAGAAAACAAGAAAGTTGTTTTCTTCTCTTGGGTGAGA--TCAT 1689
Query 1739 GTAAATTGACCTTGAACAGAGGACTCTGTTTTGTACTTTTCTGTCTAAAATATATaaaaa 1798
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1690 GTAAATTGACCTTGAACAGAGAACTCTGTTTTGTACTTTTCTGTCTAAA-TATATAAAAA 1748
Query 1799 aaTCTGTCTTTCTTGT 1814
| | |||||||||||
Sbjct 1749 A--CAGTCTTTCTTGT 1762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68105358060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5