BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73230.1
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339529 jgi|Araly1|339529|fgenesh1_pg.C_scaffold_2001628 876 0.0
Ahg312752 jgi|Araly1|312752|fgenesh1_pm.C_scaffold_1001532 551 3e-156
Ahg926695 jgi|Araly1|926695|scaffold_202256.1 315 5e-85
> Ahg339529 jgi|Araly1|339529|fgenesh1_pg.C_scaffold_2001628
Length=498
Score = 876 bits (474), Expect = 0.0
Identities = 490/498 (98%), Gaps = 0/498 (0%)
Strand=Plus/Plus
Query 126 ATGAATAGGGAAAAGTTGATGAAGATGGCTAACACTGTCCGCACTGGCGGAAAGGGGACA 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATAGGGAAAAGTTGATGAAGATGGCTAACACTGTCCGCACTGGCGGAAAGGGGACA 60
Query 186 GTAAGAAGAAAGAAGAAGGCTGTTCACAAGACCACTACAACCGATGACAAGAGGCTCCAG 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTAAGAAGAAAGAAGAAGGCTGTTCACAAGACCACTACAACCGATGACAAGAGGCTCCAG 120
Query 246 AGCACTCTTAAGAGAGTTGGAGTCAATTCCATTCCCGCCATTGAAGAAGTTAACATTTTT 305
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCACTCTTAAAAGAGTTGGAGTCAATTCCATTCCCGCCATTGAAGAAGTTAACATTTTT 180
Query 306 AAGGATGATGTAGTCATTCAGTTCATTAACCCTAAAGTTCAAGCTTCAATTGCTGCTAAC 365
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 AAGGATGATGTAGTGATTCAGTTCATTAACCCTAAAGTTCAAGCTTCTATTGCTGCTAAC 240
Query 366 ACATGGGTTGTGAGTGGTACACCACAGACGAAAAAATTGCAAGACATTCTTCCTCAGATT 425
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 ACATGGGTTGTGAGTGGTACACCACAGACGAAAAAGTTGCAAGACATTCTTCCTCAGATT 300
Query 426 ATCAGCCAACTTGGACCAGATAACTTGGACAACCTGAAGAAGCTAGCAGAGCAATTCCAG 485
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTAGCCAACTTGGACCAGATAACTTGGACAACCTGAAGAAGCTAGCAGAGCAATTCCAG 360
Query 486 AAACAAGCTCCAGGTGCAGGTGATGTCCCAGCAACAATCCAAGAAGAGGACGATGATGAT 545
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 AAACAAGCTCCAGGTGCAGGTGATGTCCCAGCAACTATCCAAGAAGAGGACGATGATGAT 420
Query 546 GATGTCCCAGATCTTGTAGTGGGAGAGACTTTCGAGACCCCTGCTACTGAAGAGGCTCCC 605
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 421 GATGTCCCAGATCTTGTAGTTGGAGAGACTTTCGAGACTCCTGCTACTGAAGAGGCTCCC 480
Query 606 AAAGCTGCTGCTTCTTAG 623
||||||||||||||||||
Sbjct 481 AAAGCTGCTGCTTCTTAG 498
> Ahg312752 jgi|Araly1|312752|fgenesh1_pm.C_scaffold_1001532
Length=495
Score = 551 bits (298), Expect = 3e-156
Identities = 419/476 (88%), Gaps = 13/476 (3%)
Strand=Plus/Plus
Query 126 ATGAATAGGGAAAAGTTGATGAAGATGGCTAACACTGTCCGCACTGGCGGAAAGGGGACA 185
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGAATAGGGAAAAGTTGATGAAGATGGCTAACACTGTCCGCACTGGCGGAAAGGGTACC 60
Query 186 GTAAGAAGAAAGAAGAAGGCTGTTCACAAGACCACTACAACCGATGACAAGAGGCTCCAG 245
|| |||||||||||||||||||| |||||||||| |||||| |||||||||||||||||
Sbjct 61 GTCAGAAGAAAGAAGAAGGCTGTGCACAAGACCAATACAACTGATGACAAGAGGCTCCAA 120
Query 246 AGCACTCTTAAGAGAGTTGGAGTCAATTCCATTCCCGCCATTGAAGAAGTTAACATTTTT 305
||||||||||||||| ||||||| || |||||||| || ||||||||||||||||| |||
Sbjct 121 AGCACTCTTAAGAGAATTGGAGTTAACTCCATTCCAGCAATTGAAGAAGTTAACATCTTT 180
Query 306 AAGGATGATGTAGTCATTCAGTTCATTAACCCTAAAGTTCAAGCTTCAATTGCTGCTAAC 365
||||||||||| || || || ||||| |||||||| |||||||||||||||||||| |||
Sbjct 181 AAGGATGATGTTGTTATCCAATTCATCAACCCTAAGGTTCAAGCTTCAATTGCTGCAAAC 240
Query 366 ACATGGGTTGTGAGTGGTACACCACAGACGAAAAAATTGCAAGACATTCTTCCTCAGATT 425
||||||||||| || ||| | || ||||| |||||||||||||| || ||||||||||||
Sbjct 241 ACATGGGTTGTTAGCGGTTCTCCTCAGACCAAAAAATTGCAAGATATCCTTCCTCAGATT 300
Query 426 ATCAGCCAACTTGGACCAGATAACTTGGACAACCTGAAGAAGCTAGCAGAGCAATTCCAG 485
|||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct 301 ATCAGCCAACTTGGACCAGACAACATGGACAACCTGAAGAAGCTAGCAGAGCAGTTCCAG 360
Query 486 AAACAAG-CTCCAGGTGCAGGTGATGTCC-CAGCAACAATCCAAGAAGAGGACGATGATG 543
||||| | |||| |||| |||| | | || ||||||| || ||||| || | |||||||
Sbjct 361 AAACA-GTCTCCTGGTGAAGGTAAGG-CCTCAGCAACCATACAAGAGGA--A-GATGATG 415
Query 544 ATGATGTCCCAGATCTTGTAGTGGGAGAGACTTTCGAGACCCCTGCTACTGAAGAG 599
| ||||||||||| || || ||| |||||| ||||| | | |||| ||||||||
Sbjct 416 ACGATGTCCCAGAGCTAGT--TGG-AGAGACATTCGA-AGC--TGCTGCTGAAGAG 465
> Ahg926695 jgi|Araly1|926695|scaffold_202256.1
Length=205
Score = 315 bits (170), Expect = 5e-85
Identities = 196/208 (94%), Gaps = 3/208 (1%)
Strand=Plus/Plus
Query 655 CTGCAAAACCCATCATAAAAATGTTTGTCGCTCGACCTCTTCTGAGCACTGTCAGATTCT 714
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1 CTGCAAAACCCATCATAAAAATGTTTGTCGCTCGACCTTTTTTGAGCACTGTCAGATTCT 60
Query 715 TGTTTTCTCTAATGCTTGCGAACAGAAAGACTTGGTTTTATTATCACTTGATGCTTTTTG 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTTTTCTCTAATGCTTGCGAACAGAAAGACTTGGTTTTATTATCACTTGATGCTTTTTG 120
Query 775 GTCCGAACAGCAATTTTCCTTTTATTAAGGTTAGATCGCTTTTTGTTTACCACCTGTTCA 834
||||||||| ||||||||| |||||||||| |||||||||||||||||| ||||||||||
Sbjct 121 GTCCGAACAACAATTTTCCATTTATTAAGGCTAGATCGCTTTTTGTTTATCACCTGTTCA 180
Query 835 AATGAGTACTACTATGTCCTGTCGCTTC 862
||||||| ||| | | || |||| ||||
Sbjct 181 AATGAGTGCTA-TGT-TC-TGTCTCTTC 205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33395675292
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5