BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73240.1
Length=2022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476456 jgi|Araly1|476456|fgenesh2_kg.2__1586__AT1G73240.1 2809 0.0
> Ahg476456 jgi|Araly1|476456|fgenesh2_kg.2__1586__AT1G73240.1
Length=1853
Score = 2809 bits (1521), Expect = 0.0
Identities = 1772/1888 (94%), Gaps = 37/1888 (2%)
Strand=Plus/Plus
Query 137 TCGTTGGCTCAGTCACTTGACTTCACGGCCCCGCTCAAGCTCTGACACGAAACTCATTTC 196
||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1 TCGTTGGCTCACTCACTTGACTTCACGGCCCCGCTCAAGTTCCGACACGAAACTCATTTT 60
Query 197 AAATTAATTTAATAAAACCTTAATCACAAAAGGGGCAAAAGCAATCGCCGGCGATTATGC 256
||||||| | | ||||| ||||||||||||||| ||||||||||||||||||
Sbjct 61 AAATTAA--T--T-----CTTAA--ACAAAAGGGGCAAAAATAATCGCCGGCGATTATGC 109
Query 257 CTTCTCCTCCGGTGCCGGAGACGGTTGTGAGCCACCGCTTCGCAGCTTTTCTTATCTGGC 316
||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 110 CTTCTCCTCCGGTACCGCAGACGGTTGTTAGCCACCGCTTCGCAGCTTTTCTTATCTGGC 169
Query 317 AATCGATTCCTTCATCAGCCAtcttcttcttcttcaacattttcctcttctcaaccactt 376
|||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||
Sbjct 170 AATCGATTCCTTCATCAGCCATTTTCTTCTTCTTCAACCTTTTCCTCTTCTCCACCACTT 229
Query 377 caatcatttcctttctcttcactttcctcGTCTTCCATTCTTCACAGCttctattctccg 436
||||||| |||||| || |||||||||||||||||||||| ||||||||||| |||||||
Sbjct 230 CAATCATCTCCTTTTTCCTCACTTTCCTCGTCTTCCATTCCTCACAGCTTCTCTTCTCCG 289
Query 437 tctcactagctctcctctcttctccgactccagattctcctctctcccctctccAATTCG 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TCTCACTAGCTCTCCTCTCTTCTCCGACTCCAGATTCTCCTCTCTCCCCTCTCCAATTCG 349
Query 497 CTGTCGGTCTTCACCGTCACCTCTCGGATCCCGAGTTCCGCCGCCGTGCTCGCGTATCTT 556
|| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 CTCTCGGCCTTCTCCGTCACCTCTCGGATCCCGAGTTCCGCCGCCGTGCTCGCGTATCTT 409
Query 557 CACGCATCGTGCTCTTCGTCTGCGCTACTTCCCTCGCTGGATTCTGCTCCTCTGCTGTGT 616
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 410 TACGCATCGTGCTCTTCGTCTGCGCTACTTCCCTCGCTGGGTTCTGCTCCGCTGCTGTGT 469
Query 617 TTTGCTTGTCTAGTGATTCGTTTGGACCCATTGGAAGAATAGGGTTTAGGGGATTAGTGA 676
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 470 TTTGCTTGTCTAGTGATTCGTTTGGACCGATTGGAAGAATAGGGTTTAGGGGATTTGTGA 529
Query 677 CTGGATTGCTTTACGCAGTCCTCTTTGTTACTAAGCAACGATGGGTTTTGGAGTTTCCTA 736
||||||||||||||||||||||||| || | |||||| |||||||||||||||||||| |
Sbjct 530 CTGGATTGCTTTACGCAGTCCTCTTCGTCATTAAGCAGCGATGGGTTTTGGAGTTTCCAA 589
Query 737 TCATTCAGCGTCCACCGTTCTTCAGCTTCAAGATTGGTCTTCCTTCGGCTCTAACACAAG 796
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 590 TCATTCAGCGTCCACCGTTCTTCAGCTTCAAGATTGGTCTTCCTTCGGCTCTCACACAAG 649
Query 797 CTTTGAAGCTATCTGGTGTGCTTTATGTGTTGTCGACGATAATGCTATTGTTTCTGCTAG 856
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 650 CTCTGAAGCTATCTGGTGTGCTTTATGTGTTGTCAACGATAATGCTATTGTTTCTGCTAG 709
Query 857 ACTGGTCAGGTGGGCTTGTGTCTGTATCGAAATTTTTGGGTGAGCAGGTCTTATCTTATG 916
||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 710 ACTGGTCGGGTGGGCTTGTGTCTGTATCGAGATTCTTGGGTGAGCAGGTCTTATCTTATG 769
Query 917 CCGGCAGTTTCTGTTTGATTCTCTCTTGGGAAGTCACTCACCATATACATAAGGTTCTGC 976
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CCGGCAGTTTCTGTTTAATTCTCTCTTGGGAAGTCACTCACCATATACATAAGGTTCTGC 829
Query 977 ACACAAAACGGTTCAGCTTTGCTCCTCCAAAAGGATCTGCTGCAGCAGAAACGAATCCAA 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 ACACAAAACGGTTCAGCTTTGCTCCTCCAAAAGGATCTGCTGCAGCAGAAACGAATCCAA 889
Query 1037 GCGAGCCTCTTCTTGCTGCTTTAGAAGGGAGCGCTCCAGGTTCCCTCGAGCAGTCTCTTG 1096
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 890 GTGAGCCTCTTCTTGCTGCTTTAGAAGGGAGCGCTCCGGGTTCCCTCGAGCAGTCTCTTG 949
Query 1097 CATACCTTGATCTCTACATGGTGTCTCAGAATAATGTTGACACATGGCGTCGTGCTGCCT 1156
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 950 CATACCTTGATCTCTACATGGTGTCTCAGAATAATGTCGACACATGGCGTCGTGCTGCCT 1009
Query 1157 TCTTTGAGGAGTCCACCGAGACGTACAAAAGAGTAATTACTCTATGCTTGAGGCCTTTGG 1216
|||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1010 TCTTCGAGGAGTCCACCGAGACTTACAAAAGAGTAATCACTCTATGCTTGAGGCCTTTGG 1069
Query 1217 AAGAGCTTGCCTCCAAGTTAGCTTCTGGGCTAGACCACACCTTTACTGAAAAAGGTTATC 1276
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1070 AAGAGCTTGCCTCCAAGTTATCTTCTGGGCTAGACCACACCTTTACTGAAAAAGGTTATC 1129
Query 1277 AGACACCACTCCAGCCACCAACCGAGTCCTTTATTGATCCAAAATTCGGCGAATCACTTA 1336
|||||||||||||||||||||||||||| ||||| |||||||| || || ||||||||||
Sbjct 1130 AGACACCACTCCAGCCACCAACCGAGTCATTTATCGATCCAAAGTTTGGGGAATCACTTA 1189
Query 1337 AGTCTTTCCAGCTATATGCATGGTGTGCTCAAACATCTGCATCCCTGACTTCAATCTCTC 1396
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1190 AGTCTTTCCAGCTATATGCATGGTGTGCTCAAACAACTGCATCCCTGACTTCAATCTCTC 1249
Query 1397 ACAAGGAAGACAGGCTCGGAGTAGCTCAACTGTCTGGTGGAAACGCTGATGTTGTCTCAA 1456
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 ACAAGGAAGACAGGCTTGGAGTAGCTCAACTGTCTGGTGGAAACGCTGATGTTGTCTCAA 1309
Query 1457 CACTTCTATCGCTTTTGCTAGCTATCGAAACGTTTATGGGGAAGAAGACTAATCTTCAAT 1516
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1310 CACTTGTATCGCTTTTGCTAGCTATTGAAACGTTTATGGGGAAGAAGACTAATCTTCAAT 1369
Query 1517 CACCTCAACAACTGATGGGACCTGCTAGTATCAAATGGGCGACCTCGAGTATGGTCAGAA 1576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 CACCTCAACAACTGATGGGACCTGCTAGTATCAAATGGGCGACCTCGAGTATGGTCAGAA 1429
Query 1577 AAGACGTTAAACCCATCAAAAGGAGTATTGGCGCAATGTACGCCTACGCATATGCAGCGA 1636
|||||||||||||||| |||||||||||||| | |||||| |||| || |||||||| |
Sbjct 1430 AAGACGTTAAACCCATAAAAAGGAGTATTGGGGGGATGTACTCCTATGCGTATGCAGCTA 1489
Query 1637 CAGATGTTTTGAGGATATCAGTATACCAGATTCTATCCACATTCCGCGATGAAATGCTCA 1696
|||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1490 CAGATGTTTTAAGGATATCAATATACCAGATTCTGTCCACATTCCGCGATGAAATGCTCA 1549
Query 1697 ACAGCGACAGAGCCGGACTTCTTGGTAGAGATTGGATTGGAAGCAAGAAACCACCTTTTG 1756
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1550 ACAGCGACAGAGCCGGACTTCTTGGTAGAGATTGGATCGGAAGCAAGAAACCGCCTTTTG 1609
Query 1757 GAACAAACGACATGCTCCTACAGAAGCTTAAGCTCTTCCTCGAGTTCCAAGCTTGATGGA 1816
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1610 GAACAAACGACATGCTGCTACAGAAGCTTAAGCTCTTCCTCGAGTTCCAAGCTTGATGAA 1669
Query 1817 AGATTAAAGAGGTACAATTCCTCGATTAAATGTGGTAACAAGTGTCATCATGATTCAA-G 1875
|||||||||| ||| |||||||||||||||| |||||||||| |||||||||||| |
Sbjct 1670 AGATTAAAGAAGTAGGATTCCTCGATTAAATGCGGTAACAAGT---ATCATGATTCAAAG 1726
Query 1876 AGCTGGATAGAAAAAGGAACTAGAGTATTTTGTTACATGATCAAAAAGCCTTGTATTGGA 1935
||||||| |||||||| ||||||||| | | | | | |||||||| |
Sbjct 1727 AGCTGGAAAGAAAAAGAAACTAGAGT-----G--A---G--C------C-TTGTATTGAA 1767
Query 1936 AAATGAAATCCCTCGATTTTGCAGAAATTTGGGATTAATCTTGTTTTT-GGTAAACTAGA 1994
||||||||||||||||||||||||| ||||||||||||||| ||||| ||| ||||| |
Sbjct 1768 AAATGAAATCCCTCGATTTTGCAGA--TTTGGGATTAATCTTCTTTTTTGGTGAACTACA 1825
Query 1995 AAATTATATAAGAATCAAACTTTAATGG 2022
|||||||||||||||||||||||| |||
Sbjct 1826 AAATTATATAAGAATCAAACTTTATTGG 1853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76028129020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5