BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73250.1
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926698 jgi|Araly1|926698|scaffold_202259.1 1531 0.0
Ahg472002 jgi|Araly1|472002|fgenesh2_kg.1__1956__AT1G17890.1 854 0.0
> Ahg926698 jgi|Araly1|926698|scaffold_202259.1
Length=1012
Score = 1531 bits (829), Expect = 0.0
Identities = 943/999 (94%), Gaps = 3/999 (0%)
Strand=Plus/Plus
Query 64 CTTTGAACGAAAATGGCGGAAACGATCGGCTCAGAGGTTTCGTCCATGTCTGACAAATCT 123
||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||
Sbjct 9 CTTTGAACGAAAATGGCGGAAACCATCGGCTCAGAGGTTTCGTCGATGTCTGGCAAATCA 68
Query 124 GCCAAAATCTTCGTCGCGGGTCATCGTGGTTTGGTTGGATCTGCCATTGTCCGCAAGCTT 183
||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||
Sbjct 69 GCCAAAATCTTCGTCGCTGGTCATCGCGGTTTGGTTGGATCTGCCATTGCCCGCAAGCTT 128
Query 184 CAGGAACAAGGTTTCACCAATCTCGTTCTTAAAACACACGCCGAGCTTGATCTCACTCGT 243
|||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||
Sbjct 129 CAGGAACAAGGTTTCACCAATCTCGTTCTTCGAACACACGCCGAGCTTGATCTCCCCCGT 188
Query 244 CAAGCCGATGTTGAATCCTTCTTTTCTCAAGAGAAGCCAGTTTATGTAATCCTAGCAGCA 303
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 189 CAAGCCGATGTTGAATCCTTCTTTGCTCAAGAGAAGCCTGTTTATGTAATCCTAGCAGCA 248
Query 304 GCTAAAGTTGGTGGTATTCACGCTAACAACACCTATCCTGCTGATTTCATTGGTGTCAAT 363
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 249 GCTAAAGTTGGTGGGATTCATGCTAACAACACTTATCCTGCTGATTTCATTGGTGTCAAT 308
Query 364 CTCCAGATTCAGACCAATGTGATCCACTCTGCATATGAGCACGGTGTGAAGAAGCTTCTC 423
|||||||||||||||||||||||||||||||| || |||||||| || ||||||||||||
Sbjct 309 CTCCAGATTCAGACCAATGTGATCCACTCTGCTTACGAGCACGGCGTCAAGAAGCTTCTC 368
Query 424 TTCCTTGGATCATCCTGCATTTACCCTAAATTTGCTCCTCAGCCAATTCCTGAGTCTGCT 483
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 369 TTCCTTGGATCATCCTGCATTTACCCCAAATTTGCTCCTCAGCCAATTCCTGAGTCTGCT 428
Query 484 TTGTTAACAGCATCGCTTGAACCAACTAATGAGTGGTATGCTATTGCTAAGATCGCTGGG 543
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 429 TTGTTAACCGCATCGCTTGAACCAACTAATGAGTGGTATGCTATTGCTAAGATCGCAGGG 488
Query 544 ATTAAGACTTGTCAGGCTTATAGGATTCAGCACGGATGGGATGCAATCTCTGGCATGCCT 603
||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 489 ATTAAGACTTGCCAGGCTTATCGGATTCAGCACGGATGGGATGCGATCTCTGGCATGCCT 548
Query 604 ACTAATCTCTATGGTCCTAATGACAATTTCCACCCGGAGAATTCTCATGTGCTTCCTGCT 663
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 549 ACTAATCTCTATGGTCCTAATGACAATTTTCACCCGGAGAATTCTCATGTGCTTCCTGCT 608
Query 664 CTTATGAGGAGGTTCCACGAGGCGAAAGTGAATGGAGCGGAGGAAGTTGTGGTGTGGGGT 723
|| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 609 CTCATGAGGAGGTTCCATGAGGCGAAAGTGAATGGAGCAGAGGAAGTTGTGGTGTGGGGT 668
Query 724 ACAGGTAGTCCGTTGAGGGAGTTCTTGCATGTTGATGATTTGGCTGATGCTTGTGTTTTC 783
||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 669 ACAGGCAGTCCGTTGAGGGAGTTCTTGCACGTGGATGATTTGGCTGATGCTTGTGTTTTC 728
Query 784 TTGCTGGATCGATACAGCGGGTTGGAGCATGTTAACATTGGAAGTGGTCAAGAAGTGACT 843
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 729 TTGCTGGATCGATACAGCGGGTTGGAGCATGTTAACATAGGAAGTGGTCAAGAAGTGACG 788
Query 844 ATTAGAGAGTTGGCTGAGTTGGTGAAAGAGGTTGTTGGTTTTGAAGGGAAGCTTGGATGG 903
|| | ||||||||||||| ||||||| || || || ||||||||||| ||||||||||||
Sbjct 789 ATCAAAGAGTTGGCTGAGCTGGTGAAGGAAGTCGTCGGTTTTGAAGGTAAGCTTGGATGG 848
Query 904 GAT-TGCACTAAGCCAGATGGCACACCGAGGAAACTTATGGACAGCTCAAAGCTCGCGTC 962
||| | ||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 849 GATAT-CACTAAGCCAGATGGGACACCGAGGAAACTGATGGACAGCTCAAAGCTCGCGTC 907
Query 963 TTTGGGTTGGACACCTAAGGTTTCTCTTAGAGATGGTCTGAGCCAAACTTATGATTGGTA 1022
||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||||
Sbjct 908 TTTGGGTTGGACACCCAAGGTTTCTCTCAGAGATGGTCTTCGCCAAACATATGATTGGTA 967
Query 1023 TTTGAAGAATGTTTGCAACCGATAAGTTAATGGTTTCTC 1061
|||||||||||| |||| || |||||| |||||||||||
Sbjct 968 TTTGAAGAATGTGTGCAGCCAATAAGT-AATGGTTTCTC 1005
> Ahg472002 jgi|Araly1|472002|fgenesh2_kg.1__1956__AT1G17890.1
Length=1312
Score = 854 bits (462), Expect = 0.0
Identities = 793/953 (83%), Gaps = 22/953 (2%)
Strand=Plus/Plus
Query 98 AGGTTTCGTCCATGTCT-GACAAATCTGCCAAAATCTTCGTCGCGGGTCATCGTGGTTTG 156
||| ||||| |||| | || ||||| ||||| ||||| ||||| || ||| | || |||
Sbjct 190 AGG-TTCGTTTATGT-TAGAGAAATCCGCCAAGATCTTTGTCGCTGGACATAGGGGATTG 247
Query 157 GTTGGATCTGCCATTGTCCGCAAGCTTCAGGAACAAGGTTTCACCAATCTCGTTCTTAAA 216
||||||||||||||||| |||||||| ||||| || |||||||||||||| || ||| |
Sbjct 248 GTTGGATCTGCCATTGTTCGCAAGCTCCAGGATCAGGGTTTCACCAATCTGGTCCTTCGA 307
Query 217 ACACACGCCGAGCTTGATCTCACTCGTCAAGCCGATGTTGAATCCTTCTTTTCTCA-AGA 275
|| || ||||||||||||||||| | ||| |||||||||||||||||||| || | |||
Sbjct 308 ACCCATTCCGAGCTTGATCTCACTAGCCAATCCGATGTTGAATCCTTCTTTGCT-ACAGA 366
Query 276 GAAGCCAGTTTATGTAATCCTAGCAGCAGCTAAAGTTGGTGGTATTCACGCTAACAACAC 335
||| ||||||||||| ||||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct 367 GAAACCAGTTTATGTCATCCTCGCTGCAGCTAAAGTCGGTGGGATTCATGCTAACAACAC 426
Query 336 CTATCCTGCTGATTTCATTGGTGTCAATCTCCAGATTCAGACCAATGTGATCCACTCTGC 395
|| || |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 427 ATACCCAGCTGATTTCATTGGTGTCAATCTCCAAATCCAGACCAATGTGATCCACTCTGC 486
Query 396 ATATGAGCACGGTGTGAAGAAGCTTCTCTTCCTTGGATCATCCTGCATTTACCCTAAATT 455
||| |||| ||||||||||| || ||||| ||||| ||||| ||||||||||| |||||
Sbjct 487 TTATAAGCATGGTGTGAAGAAACTCCTCTTTCTTGGTTCATCTTGCATTTACCCCAAATT 546
Query 456 TGCTCCTCAGCCAATTCCTGAGTCTGC-TTTGTTAACAGCAT-CGCTTGAACCAACTAAT 513
|||||||| || |||||||| ||||| || || || | | |||||||||| |||||
Sbjct 547 CGCTCCTCAACCGATTCCTGAATCTGCGCTTCTT-ACTG-GTCCGCTTGAACCGACTAAC 604
Query 514 GAGTGGTATGCTATTGCTAAGATCGCTGGGATTAAGACT-TGTCAGGCTTATAGGATTCA 572
|| ||||| || ||||| |||||||| |||||||||| | ||||| ||||| || ||||
Sbjct 605 GAATGGTACGCAATTGCCAAGATCGCAGGGATTAAGA-TGTGTCAAGCTTACCGGCTTCA 663
Query 573 GCA-CGGATGGGATGCAATCTCTGGCATGCCTACTAATCTCTATGGTCCTAATGACAATT 631
||| | ||||||||| ||||| || ||||| || ||||| || |||| ||||| ||||
Sbjct 664 GCATC-AATGGGATGCCATCTCCGGTATGCCCACGAATCTGTACGGTCAAAATGATAATT 722
Query 632 TCCACCCGGAGAATTCTCATGTGCTTCCTGCTCTTATGAGGAGGTTCCACGAGGCGAAAG 691
||||||||||||||||||||||||| |||||||| |||||||||||||| || || ||||
Sbjct 723 TCCACCCGGAGAATTCTCATGTGCTGCCTGCTCTCATGAGGAGGTTCCATGAAGCTAAAG 782
Query 692 TGAATGGA-GCGGAGGAAGTTGTGGTGTGGGGTA-CAGGTAGTCCGTTGAGGGAGTTCTT 749
|| | || || ||||||||||| ||||| | | || || |||||| ||||||| ||
Sbjct 783 CCAA-CAATGCTGAAGAAGTTGTGGTTTGGGGAAGC-GGAAGCCCGTTGCGGGAGTTTTT 840
Query 750 GCATGTTGATGATTTGGCTGATGCTTGTGTTTTCTTGCTGGATC-GATACAGCGGGTTGG 808
||||| |||||||||||||||||||||||||||||| |||||| | |||||||| || |
Sbjct 841 ACATGTCGATGATTTGGCTGATGCTTGTGTTTTCTTGATGGATCAG-TACAGCGGATTTG 899
Query 809 AGCATGTTAACATTGGAAGTGGTCAAGAAGTGACTATTAGAGAGTTGGCTGAGTTGGTGA 868
||||||| || | ||||||||| |||||||| || | ||| ||||||||||||||||
Sbjct 900 AGCATGTGAATGTAGGAAGTGGTGTCGAAGTGACGATCAAAGAATTGGCTGAGTTGGTGA 959
Query 869 AAGAGGTTGTTGGTTTTGAAGGGAAGCTTGGATGGGATTGCACTAAGCCAGATGGCACAC 928
|||| |||||||| ||| |||| ||||| | ||||| ||||| || ||||| || ||||
Sbjct 960 AAGAAGTTGTTGGGTTTAAAGGAAAGCTAGTTTGGGACTGCACAAAACCAGACGGGACAC 1019
Query 929 CGA-GGAAACTTATGGACAGCTCAAAGCTCGCGTCTTTGGGTTGGACACCTAAGGTTTCT 987
| | ||||||| ||||| | ||| ||||| ||||||||||| |||||||| ||| ||||
Sbjct 1020 C-ACGGAAACTGATGGATAACTCGAAGCTTGCGTCTTTGGGATGGACACCGAAGATTTCA 1078
Query 988 CTTAGAGATGGTCTGAGCCAAACTTATGATTGGTATTTGAAGAATGTT-TGCA 1039
|| | ||||||||| |||||||||||| ||||||||| |||||||| ||||
Sbjct 1079 CTAAAAGATGGTCTCTCCCAAACTTATGAATGGTATTTGGAGAATGTTGTGCA 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46853064993
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5