BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73260.1
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476458 jgi|Araly1|476458|fgenesh2_kg.2__1588__AT1G73260.1 1059 0.0
> Ahg476458 jgi|Araly1|476458|fgenesh2_kg.2__1588__AT1G73260.1
Length=844
Score = 1059 bits (573), Expect = 0.0
Identities = 704/766 (92%), Gaps = 13/766 (2%)
Strand=Plus/Plus
Query 44 TCCATTGG-AATAATCATACTTACGTGTTTATAAATAAGTATTACATCAACCCATATCTT 102
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 19 TCCATTGGCTATAATCATACTAACGTGTTTATAAATAAGTATTACATCAACCCATATTTT 78
Query 103 CTTCATCCACAAATAACCATTGGCTATAATTATGACAAAAACTACCAAAACCATGAATCC 162
|||| |||||||||||||||||||||| | ||| ||||||||||||||||||||||| ||
Sbjct 79 CTTCGTCCACAAATAACCATTGGCTAT-ACTATCACAAAAACTACCAAAACCATGAACCC 137
Query 163 TAAGTTTTACTTGGTTCTTGCCTTAACCGCGGTTCTGGCCTCAAACGCATATGGTGCGGT 222
|| |||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 138 TACCTTTTACTTAGTTCTTGCCTTAACCGCGGTTTTGGCCTCAAACGCATATGGTGCCGT 197
Query 223 TGTAGACATCGATGGAAACGCCATGTTCCACGAAAGTTACTACGTTCTCCCTGTCATCCG 282
| | |||||||| || ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 198 TCTCGACATCGACGGCAACATCATATTCCACGAAAGTTACTACGTTCTCCCTGTCATCCG 257
Query 283 TGGCCGAGGCGGAGGCCTGACTCTAGCAGGCCGCGGTGG-GCAGCCATGTCCT-TACGAT 340
||||||||| || |||||||||||||||||||||||||| | ||| ||||||| | ||||
Sbjct 258 TGGCCGAGGAGGCGGCCTGACTCTAGCAGGCCGCGGTGGTG-AGCTATGTCCTCT-CGAT 315
Query 341 ATCGTGCAGGAATCTTCAGAAGTTGATGAGGGCATTCCCGTAAAATTCTCAAACTGGAGG 400
||||||||||||||||||||| | || |||||||||||||||||||| ||||||||||||
Sbjct 316 ATCGTGCAGGAATCTTCAGAACTCGAGGAGGGCATTCCCGTAAAATTTTCAAACTGGAGG 375
Query 401 CTTAAGGTTGCGTTCGTTCCCGAATCACAGAACCTCAACATCGAAACAGACGTCGGAGCC 460
||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 376 CTTAAAGTTGCATTCGTTCCCGAATCAGAGAACCTCAACATCGAAACAGACATCGGAGCC 435
Query 461 ACGATCTGCATCCAGTCAACCTACTGGCGGGTCGGTGAGTTTGACCACGAGAGGAAGCAG 520
||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 436 ACGATCTGCGTTCAGTCAACCTACTGGCGGGTCGGTGATTTTGACCACGAGAGGAAGCAG 495
Query 521 TACTTCGTGGTTGCTGGTCC-AAAGCCAGAAGGGTTCGGACAAGATTCGTTGAAGAGTTT 579
|||||||| || || ||||| ||| ||||||||||| ||| |||||||||||||||||||
Sbjct 496 TACTTCGTTGTGGCGGGTCCTAAA-CCAGAAGGGTTTGGAAAAGATTCGTTGAAGAGTTT 554
Query 580 CTTCAAGATCGAGAAATCTGGAGA----GGATGCTTACAAGTTTGTGTTCTGTCCTCGGA 635
||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 555 CTTCAAGATCGAGAAATCTGGGGATCTTGG-TGCTTACAAGTTTGTGTTCTGTCCTCGGA 613
Query 636 CTTGCGACTCTGGCAATCCAAAATGCAGCGATGTCGGGATATTCATAGATGAACTTGGCG 695
||||||||||||||| |||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 614 CTTGCGACTCTGGCAGTCCAAAATGCAGCGATGTCGGGATATTCGTGGATGAACTCGGCG 673
Query 696 TTCGTCGTTTGGCTTTAAGCGATAAGCCGTTCTTGGTTATGTTCAAAAAAGCTAATGTGA 755
||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| |
Sbjct 674 TTCGTCGTTTGGCTTTAAGCGATGAGCCTTTCTTGGTTATGTTCAAAAAAGCCAATGTAA 733
Query 756 CCGAAGTTTCGTCCAAGACTATGTGAGAGGACAACTCTCGATCTTT 801
|||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 734 CCGAAGTTTCGTCCAAGACTATGTAAGAGGACAAGTCTCGATCTTT 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34005641964
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5