BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73320.1
Length=1301
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476461 jgi|Araly1|476461|fgenesh2_kg.2__1591__AT1G73320.1 1663 0.0
> Ahg476461 jgi|Araly1|476461|fgenesh2_kg.2__1591__AT1G73320.1
Length=1194
Score = 1663 bits (900), Expect = 0.0
Identities = 1042/1110 (94%), Gaps = 12/1110 (1%)
Strand=Plus/Plus
Query 1 CCTCGTTTGTGAGAGTATGTTTGGTCCGTCGATGCACATGGAAGCAGCAGAGATAGTCCA 60
||||| | ||| |||| ||||||||||||||||||| ||||||||||| |||| |||| |
Sbjct 1 CCTCGCTCGTGTGAGTCTGTTTGGTCCGTCGATGCATATGGAAGCAGCCGAGAGAGTCAA 60
Query 61 TTCGGCGGCGCGTTTTGAAGCTGAGAAAATGGGCAAGGAGGATGAGGCGGTGGAGGAGAT 120
||||||||||||| ||| |||||||||||||| | ||||||||||| |||||||||||||
Sbjct 61 TTCGGCGGCGCGTATTGGAGCTGAGAAAATGGACGAGGAGGATGAGACGGTGGAGGAGAT 120
Query 121 ACGAC-GTATGAGTGGTTACGGCGGAGATGTGATAGTAGTAGGTGGGTTTCCGGCGTCGG 179
||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 ACGACAG-ATGAGTGGTTACGGCGGAGATGTGATAGTAGTCGGTGGGTTTCCGGCGTCGG 179
Query 180 AGTCGGAATCTGAATCTGAATCCGATTTGGCGGCGGCGGAGATTATGGTTATATGGGCTA 239
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGTCGGAATCGGAATCTGAATCCGATTTGGCGGCGGCGGAGATTATGGTTATATGGGCTA 239
Query 240 TTCAAGGGCCAACTTCTTTTGCTCCAAACACACTCGTTGCTCAATCTTCTCTTGAGCTGC 299
|||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 240 TTCAAGGGCCAACTTCTTTTTCTCCAAACGCCCTCGTTGCTCAATCTTCTCTTGAGCTGC 299
Query 300 GTCTCGACGCTTGTGGCCACTCACTCTCTATTCTCCAGTCGCCATGTTCATTGAACACGC 359
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 300 GTCTCGATGCTTGTGGCCACTCACTCTCTATTCTCCAGTCGCCTTGTTCTTTGAACACGC 359
Query 360 CTGGAGTAACCGGGTCAGTGATGTGGGACAGTGGAGTGGTGCTAGGGAAGTTCTTAGAAC 419
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 CTGGAGTAACCGGTTCAGTGATGTGGGACAGTGGAGTGGTGTTAGGGAAGTTCTTAGAAC 419
Query 420 ATTCTGTTGACTCTAAGGTTCTTTCTCTTGAAGGCAAGAAAATCGTCGAGTTGGGTTCTG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATTCTGTTGACTCTAAGGTTCTTTCTCTTGAAGGCAAGAAAATCGTCGAGTTGGGTTCTG 479
Query 480 GCTGTGGCTTAGTTGGTTGTATAGCAGCACTTTTGGGAGGCAATGCT-GTCCTCACTGAT 538
| |||||||||||||||||||| ||||||||||||||||| |||| | |||||||| |||
Sbjct 480 GTTGTGGCTTAGTTGGTTGTATCGCAGCACTTTTGGGAGGTAATG-TAGTCCTCACCGAT 538
Query 539 CTTCCAGATAGACTGAGGCTACTCAAAAAGAACATCCAAACCAATTTGCACCGTGGGAAC 598
|||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 539 CTTCCAGATAGATTGAGGCTACTCAAGAAGAATATCCAAACCAATTTGCACCGTGGGAAC 598
Query 599 ACGCGTGGATCTGCTATTGTGCAGGAACTTGTTTGGGGAGATGACCCTGATCCAGATTTG 658
|| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 599 ACACGTGGATCTGCTACTGTGCAGGAACTTGTTTGGGGAGATGACCCAGATCCAGATTTG 658
Query 659 ATCGAACCATTCCCTGATTACGTATTAGGCTCAGATGTTATATACAGCGAAGAAGCTGTT 718
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 659 ATCGAACCATTCCCTGATTACGTATTAGGTTCAGATGTTATATACAGCGAAGAAGCTGTT 718
Query 719 CACCATTTGGTAAAAACGCTTTTGCAACTTTGCAGCGATCAAACTACAATCTTCCTATCA 778
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||
Sbjct 719 CACCATTTGGTAAAAACGCTTTTGCAACTCTGCGGCGATCAAACTACAATCTTCCTAGCA 778
Query 779 GGAGAACTACGAAATGATGCTGTTCTTGAGTACTTCTTAGAAACCGCACTGAAAGATTTT 838
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 779 GGAGAACTACGGAATGATGCTGTTCTTGAGTACTTCTTAGAAACCGCGCTGAAAGATTTC 838
Query 839 GCGATCGGGCGTGTGGAACAAACACAATGGCATCCAGATTATCGCAGCCATCGAGTAGTG 898
||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||
Sbjct 839 GCGATCGGGCGTGTGGAACAAGCACAATGGCATCCGGATTATCGCAGCCGTCGAGTAGTG 898
Query 899 CTTTACGTTCTTGAAAAGAAGTCGAAGAGATGCCTCGCTGATGAATCTTCGCTTAATCAA 958
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 899 CTTTACGTTCTTGAGAAGAAGTCGAAGAGATGCCTCGCTGATGACTCTTCGCTTAATCAA 958
Query 959 TCTTGTTAGCCATTGAGGTATTGTTTGTTTACACTTGACA----ACTGAAGTAGATGGCC 1014
|||| ||||||||||||||||||||||||||||||||||| | |||| |||||||
Sbjct 959 TCTTATTAGCCATTGAGGTATTGTTTGTTTACACTTGACAGTGTATTGAAATAGATGGAA 1018
Query 1015 CTAAGCGGGAAGTATAGTTCTGGCCTGATCCTTCCTTGCATATTTGCAT-ACATC-TAGC 1072
|| |||| |||||| |||||||||| |||||||||||||||||| |||| | ||| | ||
Sbjct 1019 CTCAGCGAGAAGTAAAGTTCTGGCCGGATCCTTCCTTGCATATTCGCATTA-ATCAT-GC 1076
Query 1073 TTATAGAGTGTTACAGATATACTAATTTTT 1102
|||||||||||||||||||||||| |||||
Sbjct 1077 TTATAGAGTGTTACAGATATACTATTTTTT 1106
Score = 128 bits (69), Expect = 1e-28
Identities = 84/91 (92%), Gaps = 1/91 (1%)
Strand=Plus/Plus
Query 1176 ttttt-tttGCTGTTGTAAAAAATGGATTCAGATCATTGAAGATATCTGGTCTGCGTTTT 1234
||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1104 TTTTTCTTTGCCGTTGTAAAAAATGGATTCAGATCATTGAAGATATCTGGTTTGCTTTTT 1163
Query 1235 AAGTCAGACACAATTATAGAGCAAAATTAAA 1265
|||||||| |||| ||||||||||||||||
Sbjct 1164 GAGTCAGACTCAATAATAGAGCAAAATTAAA 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48644842092
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5