BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73325.1
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926704 jgi|Araly1|926704|scaffold_202265.1 998 0.0
> Ahg926704 jgi|Araly1|926704|scaffold_202265.1
Length=709
Score = 998 bits (540), Expect = 0.0
Identities = 622/663 (94%), Gaps = 0/663 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAGCTTACTTTGTCTTTCATCACTCTCACCGTTCTCTCAGCCATCTTCACCGCA 60
||| ||||||||||||||||||||||||||||||| |||||||||||| |||| || |||
Sbjct 21 ATGAAGAAGCTTACTTTGTCTTTCATCACTCTCACAGTTCTCTCAGCCCTCTTGACAGCA 80
Query 61 GCTTCAGCGGCCGATGCTACACCAAGCCAAGTAGTCCTAGACATAGCTGGACATCCGGTT 120
|||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||
Sbjct 81 GCTTCAGCGGCCGATGCTGTACCAAGCCAAGTAGTCCTGGACACAGCTGGACATCCGGTT 140
Query 121 CAGTCCAATGTCCAATACTACATCATACCGGCCAAGATCGGAACCGGAGGTGGTCTTATC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 CAGTCCAATGTCCAATACTACATCATACCGGCCAAGATCGGAACCGGAGGTGGTCTTATC 200
Query 181 CCTTCAAACCGAAATTTAAGCACACAAGACTTGTGTCTGAATCTTGACATTGTCCAATCA 240
||||| |||||||| |||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 201 CCTTCGAACCGAAACTTAAACACACAAGACTTGTGTCTGAATCTCGACATTGTCCAATCA 260
Query 241 TCATCTCCTTTCGTCTCAGGCCTTCCCGTAACATTCTCCCCACTAAACACCAAAGTCAAG 300
|||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||| ||||
Sbjct 261 TCATCTCCATTCGTCTCAGGCCTTCCCGTAACTTTCTCCCCACTCAACACTAAAACCAAG 320
Query 301 CATGTTCAGCTCTCAGCTAGTCTCAACCTCGAGTTTGATTCCACGGTTTGGTTATGCCCT 360
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 321 CATGTCCAGCTCTCAACTAGTCTCAACCTCGAGTTTGATTCCACGGTTTGGTTATGTCCT 380
Query 361 GACTCCAAAGTGTGGAGAATCGACCACTCTGTACAACTAAGAAAGAGCTTTGTAAGCATT 420
|| ||||| || ||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 381 GAATCCAAGGTCTGGAGAATCGACCACTCTGTACAACTAAGGAAGAGCTTTGTAAGCACT 440
Query 421 GGTGGTCAGAAAGGTAAGGGTAATAGTTGGTTTCAGATTCAAGAAGATGGAGATGCTTAC 480
|||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 441 GGTGGTGAGAAAGGTAAAGGTAATAGCTGGTTTCAGATTCAAGAAGATGGAGATGCTTAC 500
Query 481 AAGCTTATGTATTGTCCTATTAGCTCCATTGTTGCGTGTATTAATGTGAGTTTGGAGATT 540
||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| |
Sbjct 501 AAGCTTATGTATTGTCCGATTAGCTCCACTATTGCGTGTATTAATGTGAGTTTGGAGACT 560
Query 541 GATGATCATGGAGTTCGACGTTTGGTTCTTAGCACTGATCAGTCTTTCGTTGTTAAGTTT 600
||| ||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 561 GATAATCTTGGAGTTCGACGTTTGGTTCTTAGCACTGATCAATCTTTCGCTGTTAAGTTT 620
Query 601 CAGAAGGCTTATGATTCAAACTCCAACTGTAATCTTAAGTCTAACTCGAGAATGTTCCTT 660
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
Sbjct 621 CAGAAGGCTTATGATTCAAACTCCAACTGTCATCTTAAGTCTAACTCGAGGATGTTCCCT 680
Query 661 TTT 663
|||
Sbjct 681 TTT 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24551158548
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5