BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73330.1
Length=1000
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926705 jgi|Araly1|926705|scaffold_202266.1 931 0.0
> Ahg926705 jgi|Araly1|926705|scaffold_202266.1
Length=670
Score = 931 bits (504), Expect = 0.0
Identities = 612/664 (92%), Gaps = 7/664 (1%)
Strand=Plus/Plus
Query 58 GAAACAATCATGAAGGCCACCATATCCATCACTACCATCTTTCTCGTGGTCGCTTTGGCC 117
||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 12 GAAACAACCATGAAGGCTACCGTATCCATCACTGTCATCTTTCTCGTGGTCGCTTTGGCC 71
Query 118 GCACCCTCCCTAGCTCGTCCTGACAACCATGTCGAGGACTCTGTAGGCCGTCTACTTCGT 177
|||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct 72 GCACCCTCTCTAGCTCGTCCAGACAATCATGTCGAGGACTCTGTAGGCCGTTTACTTCGT 131
Query 178 CCTGGTCAAACGTACCACATCGTACCTGCGAA-TCCCGAGACAGGAGGAGGTATTTTCTC 236
||||||||||| || |||||||||||||| || ||| |||| |||||||||| |||||||
Sbjct 132 CCTGGTCAAACCTATCACATCGTACCTGC-AACTCCTGAGAGAGGAGGAGGTCTTTTCTC 190
Query 237 GAACAGTGAAGAAATCTGTCCTCTTGACATCTTCCAGTCAAACAATC-CGCTTGACTTGG 295
|||||||||||| ||||||||||| |||||| ||||||||||| ||| | ||||||||||
Sbjct 191 GAACAGTGAAGAGATCTGTCCTCTCGACATCCTCCAGTCAAACGATCTC-CTTGACTTGG 249
Query 296 GCCTACCCATCAAATTTAAGTCCGAGTTATGGTTTGTTAAGGAAATGAATAGTATCACCA 355
|| |||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 250 GCGTACCCATCAAATTTAAGTCCGAGTTATGGTTTGTTAAGGAAATGAATAATGTCGCCA 309
Query 356 TCGAGTTTGAGGCTCCGAACTGGTTTTTGTGTCCTAAAGAATCCAAGGGGTGGAGAGTTG 415
| ||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| |
Sbjct 310 TAGAGTTCGAGGCTCCCAACTGGTTTTTGTGTCCTGAAGAATCCAAGGGGTGGAGAGTCG 369
Query 416 TGTACTCTGAAGAATTCAAAAAGAGTCTTATAATAAGCACTGGTGGTTCATCAAACCCAA 475
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 370 TGTACTCTGAAGAATACAAAAAGAGTCTTATAATAAGCACTGGTGTTTCATCAAACCCAA 429
Query 476 GTGGCTTCCAGATCCATCGAGTCGACGGAGGTGCTTACAAGATTGTATATTGTACAAACA 535
|||||||||||||||||||||| ||||||||| |||||||||||| |||||||| | ||
Sbjct 430 GTGGCTTCCAGATCCATCGAGTTGACGGAGGTTTTTACAAGATTGTGTATTGTACGACCA 489
Query 536 TCTCGACTACTACGTGCATGAACGTTGGCATATTCACCGATATCTCTGGTGCACGACGCT 595
| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 490 TATCTCCTACTACGTGCATGGACGTTGGCATATTCACCGATATCTCTGGTGCACGACGCT 549
Query 596 TAGCCTTGACCAGCGATGAGGCTCTCCTAGTTAAGTTCCAGAAGGCAGCAACTCCAAAAG 655
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TAGCCTTGACCAACGACGAGGCTCTCCTAGTTAAGTTCCAGAAGGCAGCAACTCCAAAAC 609
Query 656 CTGATTTGAAGACTAAGCTGAGGATGTTCCCTTTCTACTGATTCACAACTCTTGTACCAA 715
||||||||||||||||||||||||||||||||||||||| | | |||||| | |||||||
Sbjct 610 CTGATTTGAAGACTAAGCTGAGGATGTTCCCTTTCTACTAACTAACAACT-T-GTACCAA 667
Query 716 GAAA 719
|||
Sbjct 668 -AAA 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37169844075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5