BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73340.1
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926706 jgi|Araly1|926706|scaffold_202267.1 1219 0.0
> Ahg926706 jgi|Araly1|926706|scaffold_202267.1
Length=1509
Score = 1219 bits (660), Expect = 0.0
Identities = 738/777 (95%), Gaps = 0/777 (0%)
Strand=Plus/Plus
Query 808 AGGCACGAAAGGAGATCATAAGGAAGATAAACAAGACGATAGAAAAGCGGTTGCAAAACA 867
||||||||||||| |||||||| ||||||||||||||| |||| ||| |||||| ||||
Sbjct 732 AGGCACGAAAGGAAATCATAAGCAAGATAAACAAGACGGTAGAGAAGTTGTTGCAGAACA 791
Query 868 AAGCAGCATCAGATACTGCTGGTAATGGTGTACTTGGAAGATTGCTTGAAGAAGAAAGTT 927
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 792 AAGAAGCATCAGATACTGCTGGGAATGGTGTACTTGGAAGATTGCTTGAAGAAGAAAGCT 851
Query 928 TACCAAACGAATCAATGGCAGATTTTATCATCAATCTACTGTTTGCCGGAAATGAAACAA 987
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 852 TACCAAACGAATCCATGGCAGATTTTATCATCAATCTACTGGTTGCCGGAAATGAAACCA 911
Query 988 CCTCAAAAACAATGCTGTTTGCGGTTTACTTCCTCACTCATTGTCCTAAGGCCATGACCC 1047
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 CCGCGAAAACAATGCTGTTTGCGGTTTACTTCCTCACTCATTGTCCTAAGGCCATGACCC 971
Query 1048 AACTCCTGGAGGAACATGATAGGCTCGCGGGTGGAATGTTAACATGGCAAGATTACAAGA 1107
||||||||| |||||| |||||||||||||| |||||| |||||||||||||||||||||
Sbjct 972 AACTCCTGGCGGAACACGATAGGCTCGCGGGAGGAATGCTAACATGGCAAGATTACAAGA 1031
Query 1108 CAATGGACTTCACTCAATGCGTAATAGATGAAACACTCAGGCTTGGTGGAATTGCGATAT 1167
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |
Sbjct 1032 CAATGGACTTCACTCAATGCGTAATAGATGAGACACTCAGGCTTGGGGGAATTGCAATCT 1091
Query 1168 GGCTTATGAGAGAGGCCAAAGAAGATGTCTCATATCAAGATTATGTCATTCCCAAGGGAT 1227
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1092 GGCTAATGAGAGAGGCGAAAGAAGATGTCTCATACCAAGATTATGTCATTCCCAAGGGAT 1151
Query 1228 GCTTCGTAGTTCCGTTTCTCTCGGCAGTGCACTTAGACGAGAGCTATTACAAAGAAAGTC 1287
|||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1152 GCTTTGTTGTTCCGTTTCTCTCGGCAGTGCACTTAGATGAGAGCTATTACAAGGAAAGTC 1211
Query 1288 TCTCCTTCAATCCATGGCGATGGCTTGACCCTGAAACTCAGCAAAAGAGGAATTGGAGAA 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 TCTCCTTCAATCCATGGCGATGGCTTGACCCTGAAACTCAGCAAAAGAGGAATTGGAGAA 1271
Query 1348 CGAGCCCTTTTTATTGCCCATTTGGTGGAGGAACTCGGTTTTGCCCAGGAGCAGAACTGG 1407
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1272 CGAGCCCTTTCTATTGCCCATTTGGTGGAGGAACTCGGTTTTGTCCAGGAGCAGAACTGG 1331
Query 1408 CTCGCCTTCAAATTGCTCTCTTTCTGCATTACTTCATCACCACATATAAGTGGACACAAC 1467
||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1332 CTCGCCTACAAATTGCTCTCTTTCTGCATTACTTCATCACCACATACAGGTGGACACAAC 1391
Query 1468 TTAAGGAAGATCGTATCTCCTTCTTCCCTTCGGCTCGTCTAGTGAATGGCTTCAAAATCC 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 TTAAGGAAGATCGTATCTCCTTCTTCCCTTCGGCTCGTCTAGTGAATGGCTTCAAAATCC 1451
Query 1528 AGTTGAACAGACGAGACAGTGATCCTCCGAATCAATAATGAACCAACAATCTTCACC 1584
||||||||||||||||||||||||||| |||||||||| ||||||||| ||| ||||
Sbjct 1452 AGTTGAACAGACGAGACAGTGATCCTCGGAATCAATAAAGAACCAACACTCTCCACC 1508
Score = 1062 bits (575), Expect = 0.0
Identities = 682/734 (93%), Gaps = 6/734 (1%)
Strand=Plus/Plus
Query 1 GAGACAG-GGTAATTGATTTT-ATGGCGGAATCTGCAGGAGAATCCTATAGGCTTCTCTC 58
||||||| | ||||| |||| |||||||||| |||||||||||| ||| ||||||||||
Sbjct 2 GAGACAGAAG-AATTGGTTTTAATGGCGGAATTTGCAGGAGAATCTTATTGGCTTCTCTC 60
Query 59 ---TGTTTCTTCATCAACCACATTTCTTGCCTTCATAATCATCTTCTTACTTGCGGGTAT 115
|| | || ||||||||||||||||||| ||||| ||||||||||| || ||||| ||
Sbjct 61 GGGTGCTGCTGCATCAACCACATTTCTTGCTTTCATCATCATCTTCTTCCTCGCGGGAAT 120
Query 116 AGCAAGAAGAAAGAGAAGAGCGCCTCACAGGCTGCCTCCGGGAAGCAGAGGATGGCCTTT 175
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 121 AGCAAGAAGAAAGAGAAGAGAGCCTCATAGGCTGCCTCCGGGAAGCAGAGGATGGCCTTT 180
Query 176 GATCGGAGATACCTTCGCTTGGCTCAACGCCGTCGCTGGTTCTCATCCTTCAAGCTTCGT 235
||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 181 GATCGGAGACACCTTCGCTTGGCTCAACGCCGTCTCTGGTTCTCATCCTTCAAGTTTCGT 240
Query 236 CGAGAAACAAATAAAAAAGTATGGGAGGATATTCTCGTGTAGCTTGTTTGGGAAATGGGC 295
|| |||||||| |||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 TGATAAACAAATCAAAAGGTATGGGAGGATATTCTCGTGTAGCTTGTTCGGGAAATGGGC 300
Query 296 AGTGGTATCAGCAGACCCGGATTTTAACCGGTTTATAATGCAGAACGAAGGAAAGCTATT 355
|||||||||||| ||||||| |||||||||||| ||||||||||||||||| ||||| ||
Sbjct 301 AGTGGTATCAGCTGACCCGGCTTTTAACCGGTTCATAATGCAGAACGAAGGCAAGCTGTT 360
Query 356 TCAGTCAAGTTATCCAAAGTCTTTCAGGGATTTGGTTGGGAAAGATGGAGTGATCACAGT 415
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 TCAGTCGAGTTACCCAAAGTCTTTCAGGGATTTGGTTGGGAAAGATGGAGTGATCACGGT 420
Query 416 GCATGGTGATCAGCAGAGACGGCTTCACTCGATTGCATCGAGCATGATGCGTCATGACCA 475
||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 421 GCACGGTGATCAGCAGAGACGGCTTCATTCGATTGCATCAAGCATGATGCGTCATGACCA 480
Query 476 GCTCAAGACTCATTTTCTTGAGGTTATTCCCGTCGTTATGCTCCAGACACTGAGTAATTT 535
|||||||||||||||||||||||||||||| || |||||||| |||||| ||||||||||
Sbjct 481 GCTCAAGACTCATTTTCTTGAGGTTATTCCAGTGGTTATGCTTCAGACATTGAGTAATTT 540
Query 536 CAAGGACGGTGAAGTCGTGCTTCTCCAAGATATCTGCAGAAAGGTTGCCATTCATCTTAT 595
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 541 CAAGGACGGTGAAGTCGTGCTTCTCCAGGATATCTGCAGAAAGGTTGCGATTCATCTTAT 600
Query 596 GGTTAACCAACTTCTCGGTGTGTCGAGCGAATCAGAAGTCGATGAAATGTCTCAGCTTTT 655
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 601 GGTTAACCAACTTCTCGGTGTGTCGAGCGAATCAGAAGTTGATGAAATGTCTCAGTTTTT 660
Query 656 CTCTGATTTTGTTGATGGATGTCTCTCTGTTCCTATTGACTTGCCTGGTTTCACATACAA 715
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 661 CTCCGATTTTGTTGATGGATGTCTCTCTGTTCCTATAAACTTGCCTGGTTTCACATACCA 720
Query 716 CAAAGCAATGAAGG 729
||||||||||||||
Sbjct 721 CAAAGCAATGAAGG 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64182062825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5