BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73350.2
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476466 jgi|Araly1|476466|fgenesh2_kg.2__1596__AT1G73350.2 632 1e-180
> Ahg476466 jgi|Araly1|476466|fgenesh2_kg.2__1596__AT1G73350.2
Length=797
Score = 632 bits (342), Expect = 1e-180
Identities = 486/549 (89%), Gaps = 35/549 (6%)
Strand=Plus/Plus
Query 397 GCTGCAACCCAAGCTGATTCATCTCCAGCATCTATTCCCTTGCCACTTCGTGTGGAGCCC 456
||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||||
Sbjct 251 GCTGCAACCCAAGCTGATTCATCTCCAGCATCTGTTCCCTTACCCCTTCGTGTTGAGCCC 310
Query 457 AAACCAAAGAGTGGTATCAGGCAGCAAGATTTGCTGAGGAAAGTTGTAGAGGTTAAACCT 516
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 311 AAACCAAAAAGTGGTATCAGGCAGCAAGATTTGCTGAGAAAAGTTGTTGAGGTTAAACCT 370
Query 517 AAACGTCCAAA-GATCTCAACACCATCAAGCCCAAGCTTATCTCCCCCTGTTAGAAGTGA 575
||||||||||| | ||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 371 AAACGTCCAAAAG-TCTCAACACTGTCAAGCCCAAGCTTATCTCCCCCTGATAGAAGTGA 429
Query 576 TAGAGGTCCAACAGAGGCAAAAGTTCACAGAGATAAGCAGAAAGAAGAAGCTATGCCAGT 635
||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| | ||
Sbjct 430 TAGAGGTCCAACAGATGCAAAAGTTCACCGAGATAAGCAGAAAGAAGAACCTATGACTGT 489
Query 636 GTTGAAGAAACCTGG-C-G-C-AGA----CA----G----A-A-A----TGACGGAAAAG 673
||||||||||| ||| | | | ||| || | | | | |||| | ||||
Sbjct 490 GTTGAAGAAAC-TGGACAGACCAGAGGAGCAACCTGCCGCAGACAAAAATGACAGTAAAG 548
Query 674 CTACGGAAAGCAATGGGCAAGGTCAAAATGCTCCGAAAGGCTTGTTGGGATTAGCATATG 733
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 549 CTACGGAAAGCAATGGACAAGGTCAAAATGCTCTGAAAGGCTTGTTGGGATTAGCATATG 608
Query 734 ATAGTTCAGATGAAGAAGACTGAGTGGAGTGAT-AACCCTGCA-A---T-CT--C-C-TA 783
| |||||||||||||||||||||| |||||||| ||||||| | | | || | | ||
Sbjct 609 AGAGTTCAGATGAAGAAGACTGAGAGGAGTGATGAACCCTGAATAGGGTTCTATCTCCTA 668
Query 784 TAAGTCTTCTTGCTTTTTATTTTGTCGAAAGCTTACAAGAGTTTAGCTTTAGGATACAAT 843
|| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 669 TATGTCTTCTTGCTTTTTATTTTGTCGAAAGCTTACAAGAGTTTAGCTTTAGGGTTCAAT 728
Query 844 ACATCTTTTGCCATCTAGCCCTGTACTTGTTGTAATTGTTGAAACCAAATGGGTTAGTTG 903
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||
Sbjct 729 ACATCTTTTGCCATCTAGCTCTGCACTTGTTGTAATTGTTGAAACCAAATGGGTTTGTTG 788
Query 904 GAGTTTGAA 912
|||||||||
Sbjct 789 GAGTTTGAA 797
Score = 287 bits (155), Expect = 1e-76
Identities = 171/179 (96%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 110 TAGAATCGAAGACGATGGCAGGGAGAGAAGTTAAAGAATACACAAATCTGTCTGACCCTA 169
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 75 TAGAATCGAAGACGATGGCAGGTAGAGAAGTTCGAGAATACACAAATCTGTCTGACCCTA 134
Query 170 AAGATAAGAAATCAGGGAAAGGTAAGATTGATGATGAAGACGTCACCTTTCAACGAATGG 229
|||||||||||| |||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 135 AAGATAAGAAATTAGGGAAGGGTAAGATAGATGATGAAGACGTCACCTTTCAACGGATGG 194
Query 230 TTGCAAAGATGCAAGAGGTTGCTGGTGAACGTGGAGGCTATCTTCATGGACGAGGCGCT 288
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 195 TTGCAAAGATGCAAGAGGTTGCTGGTGAACGTGGAGGCTATCTTCATGGACGGGGCGCT 253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35111206557
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5