BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73380.1
Length=1538
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926710 jgi|Araly1|926710|scaffold_202271.1 2023 0.0
> Ahg926710 jgi|Araly1|926710|scaffold_202271.1
Length=1348
Score = 2023 bits (1095), Expect = 0.0
Identities = 1275/1361 (94%), Gaps = 16/1361 (1%)
Strand=Plus/Plus
Query 48 AAGCAGACGACGGTGTTGGTCATGGAGATAGGAGAGATAGAGATAGCGAAACAGAGATGC 107
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 AAGCAGACGACGGTGTTGGCCATGGAGATCGGAGAGATAGAGATAGCGAAACAGAGATGC 60
Query 108 GAATCGGTTATAAGAACAATCGAGAATCTTCCTTTATCAACTGCAATCACTGCTTCGTGC 167
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GAATCGGTTATAAGAACAATCGAGAATCTTCCTTTATCAACTGCAGTCACTGCTTCGTGC 120
Query 168 CGTCGCACActccttaagctcgcttcctccgagctctcctttctctcgtctctctcttct 227
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 121 CGTCGCACACTCCTTAAGCTCGCTTCCTCCGAGCTCTCCTTCCTCTCGTCACTCTCTTCC 180
Query 228 gatccttctccgaaa-cctctcAGTGTCAACATTGGCCACATTGAATCAGTGGTACGGAT 286
| ||||||||| | | ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 181 GTTCCTTCTCC-ACAGCCTCTCAGTGTCAACATTGGCCACATTGAGTCAGTTGTACGGAT 239
Query 287 TTTACAGCTTCCGTCTATCACCGGCGTTTCGCGCGTTTGCAAACCGATTCCTCTTCCGAT 346
||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTGCAGCTCCCTTCCGTCACCGGCGTTTCGCGCGTTTGCAAACCGATTCCTCTTCCGAT 299
Query 347 TGGTGGCGTTCATGTTGATCTCGTTTGTACTCTCGGAAAAGTTCCTGTATGGATCATCGT 406
||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 300 TGGTGGCGTTCATGTTGATCTGGTATGTACTCTCGGAAAAGTTCCCGTATGGATCATCGT 359
Query 407 CTCTGATAGAAACCCTAGGTACATCTCCTGGAACGGTGATCGCCATGGAAGCAAAGGTTT 466
|||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 360 CTCTGATAGAAACCCTAGATACATCTCCTGGAGTGGAGATCGCCATGGAAGCAAAGGTTT 419
Query 467 AAGATCTAGAATCGAACAGATTCTCGCCGCTGCTAATTCCACAACCACGCTTAAACCTTC 526
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 420 AAGATCTAGAATCGAACAGATTCTCGCCGCTGCTAATTCCACAACAACGCTAAAACCTTC 479
Query 527 TTCGGTGATTCTGTTCTTCGCAAATGGTCTCCCTTCTTC-AGTTTACGAGAAACTGAAAG 585
|||||||||||||||||||||||||||| | |||| ||| | ||||||||||||||||||
Sbjct 480 TTCGGTGATTCTGTTCTTCGCAAATGGTTTACCTTGTTCGA-TTTACGAGAAACTGAAAG 538
Query 586 ATGAATTCGGAGCTGTGTATTTCGATTTTGGCTTCGATTCTG-ATTCGGATTCGGATATC 644
| ||||| ||||||| | |||||||||| ||||| ||| ||||||||||||||||
Sbjct 539 ACGAATTTGGAGCTGCGCATTTCGATTT---CTTCGGG-CTGGATTCGGATTCGGATATT 594
Query 645 TCAATGCTCGATGATTTTGATTGCGAATGGGTTAACGTTGTTCGAACCAGATCATATAAA 704
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TCAATGCTCGATGATTTCGATTGCGAATGGGTTAACGTTGTTCGAACCAGATCATATAAA 654
Query 705 GAAGCAGTTTCTATTGAGATCAAGCTGATAGATCAATGTGATTCACTTGCTTCTCCTGAA 764
|||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 655 GAAGCAGTTTCTGTTGAGATCAAGCTCATAGATCAATGTGATTCACTTGCCTCTCCTGAA 714
Query 765 ACTGAGGTTTTAGTTCAAGCAGAGGTCACAGAGCTAAGTCAAAAAGATGCTTTTTCTACT 824
||||||||||||||||||| ||| |||||||||||||| |||||||||| ||||||| ||
Sbjct 715 ACTGAGGTTTTAGTTCAAGAAGATGTCACAGAGCTAAGCCAAAAAGATGTTTTTTCTTCT 774
Query 825 GTAATCTCCTCCATGAGATTGCTTGGTGAAGACTGTCTCATTAATTTCGACACAACGGCT 884
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 775 GTAATCTCCTCCATGAGATTGCTTGGTGAAGACTATCTCATTAATTTCGACACAACGGCT 834
Query 885 CTTGTTGCTCTCGTTTCCGGAATCAGTAATGGGTGTGCAGAGAGACTCGTGGATATGCCT 944
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 835 CTTGTTGCTCTCGTTTCTGGAATCAGTAACGGGTGTGCAGAGAGACTCGTGGATATGCCT 894
Query 945 GAGATCGAATTAGAAGAAAAGTTTAAGGGCAATACCGTTTTTGTGATTGCTCAGGCGAGA 1004
|||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 895 GAGATCGACTTAGAAGAAAAGTTTAAGGGAAATACTGTTTTTGTGATCGCTCAGGCGAGA 954
Query 1005 TCTGAAATTGAGAAGCCAGGCCTTGTCAAAGTGGGAACTGTATTATCAGGGAAGCGTGGT 1064
|||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| ||
Sbjct 955 TCTGAAATTGAGAAGCCAGGTCTTGTCAAAATGGGAAGTGTATTATCAGGGAAGCGAGGG 1014
Query 1065 ATTGTATGCAAGAGTGTTTTCTCAGAGTTCAAGGAGTTAGTATCCATGTATGCTGGACCC 1124
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1015 ATTGTATGCAAGAGTGTTCTCTCAGAGTTCGAGGAGTTAGTATCCATGTATGCTGGACCC 1074
Query 1125 AATGAGAAACTCAGAGCTGAACAGTTATTGAAGAGCCTAATGGTGGTAAATGACAATCCC 1184
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1075 AATGAGAAACTCAGAGCTGAGCAGTTGTTGAAGAGCCTAATGGTGGTAAATGACAATCCC 1134
Query 1185 TCAGAGCGTGTGATGAGTCTCCCAACAACGAGGAAGTTAGCGATGAAGAACAAGACTGTG 1244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TCAGAGCGTGTGATGAGCCTCCCAACAACGAGGAAGTTAGCGATGAAGAACAAGACTGTG 1194
Query 1245 TTTGGGACAGGTGATAGATGGGGAGCTCCTACCTTGACTGCAAACATGGCGTTTGTCAGA 1304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1195 TTTGGGACAGGTGATAGATGGGGAGCTCCTACATTGACTGCAAACATGGCGTTTGTCAGA 1254
Query 1305 GCCGTGGCTCAGTCGGGCATGTCTCTTTCCACTATTGACCATAGCCCTCGAGCTCTCACT 1364
||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct 1255 GCCGTGGCTCAATCGGGCATGTCTCTGGCCACTATCGATCATAGCCCTCGAGCTCTCACC 1314
Query 1365 GGCGATTAGTCGTGTTAAAGTTCAAACTTCTACCTATTCTG 1405
|| ||||| | | | | |||||| || ||||||||||||
Sbjct 1315 GGTGATTAAT-G-G--A--GTTCAA-CTGCTACCTATTCTG 1348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57592450440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5