BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G73380.1 Length=1538 Score E Sequences producing significant alignments: (Bits) Value Ahg926710 jgi|Araly1|926710|scaffold_202271.1 2023 0.0 > Ahg926710 jgi|Araly1|926710|scaffold_202271.1 Length=1348 Score = 2023 bits (1095), Expect = 0.0 Identities = 1275/1361 (94%), Gaps = 16/1361 (1%) Strand=Plus/Plus Query 48 AAGCAGACGACGGTGTTGGTCATGGAGATAGGAGAGATAGAGATAGCGAAACAGAGATGC 107 ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 1 AAGCAGACGACGGTGTTGGCCATGGAGATCGGAGAGATAGAGATAGCGAAACAGAGATGC 60 Query 108 GAATCGGTTATAAGAACAATCGAGAATCTTCCTTTATCAACTGCAATCACTGCTTCGTGC 167 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 61 GAATCGGTTATAAGAACAATCGAGAATCTTCCTTTATCAACTGCAGTCACTGCTTCGTGC 120 Query 168 CGTCGCACActccttaagctcgcttcctccgagctctcctttctctcgtctctctcttct 227 ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 121 CGTCGCACACTCCTTAAGCTCGCTTCCTCCGAGCTCTCCTTCCTCTCGTCACTCTCTTCC 180 Query 228 gatccttctccgaaa-cctctcAGTGTCAACATTGGCCACATTGAATCAGTGGTACGGAT 286 | ||||||||| | | ||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 181 GTTCCTTCTCC-ACAGCCTCTCAGTGTCAACATTGGCCACATTGAGTCAGTTGTACGGAT 239 Query 287 TTTACAGCTTCCGTCTATCACCGGCGTTTCGCGCGTTTGCAAACCGATTCCTCTTCCGAT 346 ||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TTTGCAGCTCCCTTCCGTCACCGGCGTTTCGCGCGTTTGCAAACCGATTCCTCTTCCGAT 299 Query 347 TGGTGGCGTTCATGTTGATCTCGTTTGTACTCTCGGAAAAGTTCCTGTATGGATCATCGT 406 ||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| Sbjct 300 TGGTGGCGTTCATGTTGATCTGGTATGTACTCTCGGAAAAGTTCCCGTATGGATCATCGT 359 Query 407 CTCTGATAGAAACCCTAGGTACATCTCCTGGAACGGTGATCGCCATGGAAGCAAAGGTTT 466 |||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||| Sbjct 360 CTCTGATAGAAACCCTAGATACATCTCCTGGAGTGGAGATCGCCATGGAAGCAAAGGTTT 419 Query 467 AAGATCTAGAATCGAACAGATTCTCGCCGCTGCTAATTCCACAACCACGCTTAAACCTTC 526 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 420 AAGATCTAGAATCGAACAGATTCTCGCCGCTGCTAATTCCACAACAACGCTAAAACCTTC 479 Query 527 TTCGGTGATTCTGTTCTTCGCAAATGGTCTCCCTTCTTC-AGTTTACGAGAAACTGAAAG 585 |||||||||||||||||||||||||||| | |||| ||| | |||||||||||||||||| Sbjct 480 TTCGGTGATTCTGTTCTTCGCAAATGGTTTACCTTGTTCGA-TTTACGAGAAACTGAAAG 538 Query 586 ATGAATTCGGAGCTGTGTATTTCGATTTTGGCTTCGATTCTG-ATTCGGATTCGGATATC 644 | ||||| ||||||| | |||||||||| ||||| ||| |||||||||||||||| Sbjct 539 ACGAATTTGGAGCTGCGCATTTCGATTT---CTTCGGG-CTGGATTCGGATTCGGATATT 594 Query 645 TCAATGCTCGATGATTTTGATTGCGAATGGGTTAACGTTGTTCGAACCAGATCATATAAA 704 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 595 TCAATGCTCGATGATTTCGATTGCGAATGGGTTAACGTTGTTCGAACCAGATCATATAAA 654 Query 705 GAAGCAGTTTCTATTGAGATCAAGCTGATAGATCAATGTGATTCACTTGCTTCTCCTGAA 764 |||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 655 GAAGCAGTTTCTGTTGAGATCAAGCTCATAGATCAATGTGATTCACTTGCCTCTCCTGAA 714 Query 765 ACTGAGGTTTTAGTTCAAGCAGAGGTCACAGAGCTAAGTCAAAAAGATGCTTTTTCTACT 824 ||||||||||||||||||| ||| |||||||||||||| |||||||||| ||||||| || Sbjct 715 ACTGAGGTTTTAGTTCAAGAAGATGTCACAGAGCTAAGCCAAAAAGATGTTTTTTCTTCT 774 Query 825 GTAATCTCCTCCATGAGATTGCTTGGTGAAGACTGTCTCATTAATTTCGACACAACGGCT 884 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 775 GTAATCTCCTCCATGAGATTGCTTGGTGAAGACTATCTCATTAATTTCGACACAACGGCT 834 Query 885 CTTGTTGCTCTCGTTTCCGGAATCAGTAATGGGTGTGCAGAGAGACTCGTGGATATGCCT 944 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 835 CTTGTTGCTCTCGTTTCTGGAATCAGTAACGGGTGTGCAGAGAGACTCGTGGATATGCCT 894 Query 945 GAGATCGAATTAGAAGAAAAGTTTAAGGGCAATACCGTTTTTGTGATTGCTCAGGCGAGA 1004 |||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||| Sbjct 895 GAGATCGACTTAGAAGAAAAGTTTAAGGGAAATACTGTTTTTGTGATCGCTCAGGCGAGA 954 Query 1005 TCTGAAATTGAGAAGCCAGGCCTTGTCAAAGTGGGAACTGTATTATCAGGGAAGCGTGGT 1064 |||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| || Sbjct 955 TCTGAAATTGAGAAGCCAGGTCTTGTCAAAATGGGAAGTGTATTATCAGGGAAGCGAGGG 1014 Query 1065 ATTGTATGCAAGAGTGTTTTCTCAGAGTTCAAGGAGTTAGTATCCATGTATGCTGGACCC 1124 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1015 ATTGTATGCAAGAGTGTTCTCTCAGAGTTCGAGGAGTTAGTATCCATGTATGCTGGACCC 1074 Query 1125 AATGAGAAACTCAGAGCTGAACAGTTATTGAAGAGCCTAATGGTGGTAAATGACAATCCC 1184 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 1075 AATGAGAAACTCAGAGCTGAGCAGTTGTTGAAGAGCCTAATGGTGGTAAATGACAATCCC 1134 Query 1185 TCAGAGCGTGTGATGAGTCTCCCAACAACGAGGAAGTTAGCGATGAAGAACAAGACTGTG 1244 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1135 TCAGAGCGTGTGATGAGCCTCCCAACAACGAGGAAGTTAGCGATGAAGAACAAGACTGTG 1194 Query 1245 TTTGGGACAGGTGATAGATGGGGAGCTCCTACCTTGACTGCAAACATGGCGTTTGTCAGA 1304 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1195 TTTGGGACAGGTGATAGATGGGGAGCTCCTACATTGACTGCAAACATGGCGTTTGTCAGA 1254 Query 1305 GCCGTGGCTCAGTCGGGCATGTCTCTTTCCACTATTGACCATAGCCCTCGAGCTCTCACT 1364 ||||||||||| |||||||||||||| ||||||| || |||||||||||||||||||| Sbjct 1255 GCCGTGGCTCAATCGGGCATGTCTCTGGCCACTATCGATCATAGCCCTCGAGCTCTCACC 1314 Query 1365 GGCGATTAGTCGTGTTAAAGTTCAAACTTCTACCTATTCTG 1405 || ||||| | | | | |||||| || |||||||||||| Sbjct 1315 GGTGATTAAT-G-G--A--GTTCAA-CTGCTACCTATTCTG 1348 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57592450440 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5