BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73410.1
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908956 jgi|Araly1|908956|Al_scaffold_0002_2037 1186 0.0
Ahg920720 jgi|Araly1|920720|scaffold_102001.1 370 1e-101
> Ahg908956 jgi|Araly1|908956|Al_scaffold_0002_2037
Length=732
Score = 1186 bits (642), Expect = 0.0
Identities = 703/733 (96%), Gaps = 2/733 (0%)
Strand=Plus/Plus
Query 221 ATGATCATGTGCAGCCGAGGCCATTGGAGACCAGCTGAAGACGAGAAGCTCAAGGATCTT 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATCATGTGCAGCCGAGGCCATTGGAGACCAGCTGAAGACGAGAAGCTCAAGGATCTT 60
Query 281 GTCGAACAATACGGTCCTCACAATTGGAACGCCATTGCTCTCAAGCTTCCTGGTCGCTCT 340
|||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||
Sbjct 61 GTCGAACAATACGGTCCTCATAATTGGAACGCCATAGCTCTCAAGCTCCCTGGTCGATCT 120
Query 341 GGTAAGAGTTGTAGATTGAGATGGTTTAATCAATTGGATCCAAGGATCAACCGAAACCCT 400
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GGTAAGAGTTGTAGATTGAGGTGGTTTAATCAATTGGATCCAAGGATAAACCGAAACCCT 180
Query 401 TTCACGGAAGAAGAAGAAGAAAGACTTTTAGCGGCTCATCGGATCCATGGGAACAGATGG 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCACGGAAGAAGAAGAAGAAAGACTTTTAGCGGCTCATCGGATCCATGGGAACAGATGG 240
Query 461 TCCATCATCGCAAGGCTTTTCCCTGGAAGAACTGATAACGCCGTCAAGAACCATTGGCAC 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCATCATCGCAAGGCTTTTCCCTGGAAGAACTGATAACGCCGTCAAGAACCATTGGCAC 300
Query 521 GTCATCATGGCTCGTCGCACACGCCAAACCTCTAAGCCTCGTCTTCTTCCCTCGACGACT 580
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 301 GTCATCATGGCTCGTCGCACACGTCAAACCTCTAAGCCTCGTCTTCTACCCTCGACGACT 360
Query 581 TCGTCTTCTTCTTTAATGGCGAGTGAACAAATCATGATGAGTTCTGGTGGTTATAATCAT 640
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 361 TCGTCTTCTTCTTTAATGGCGAGTGAACAAATCATGATGAGTTCTGGTGGTTATGATCGT 420
Query 641 AATTATAGTTCCGATGATCGGAAGAAAATATTTCCAGCAGACTTTATAAATTTCCCTTAC 700
||||||||||||| |||| ||||||||||||| ||||||||| |||||||||||||||||
Sbjct 421 AATTATAGTTCCGGTGATAGGAAGAAAATATTACCAGCAGACGTTATAAATTTCCCTTAC 480
Query 701 AAATTCTCTCATATCAATCATCTTCACTTCCTAAAGGAGTTTTTCACCGGAAAGATCGCT 760
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 CAGTTCTCTCATATCAATCATCTTCAGTTCCTAAAGGAGTTTTTCACCGGAAAGATCGCT 540
Query 761 TTAAATCACAAAGCAAATC-AGAGTAAAAAGCCTATGGAGTTCTACAATTTTCTACAAGT 819
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTAAATCACAAAGCAAA-CGAGAGTAAAAAGCCTATGGAGTTCTACAATTTTCTACAAGT 599
Query 820 AAACACAGATTCAAACAAGAGCGAGATTATAGATCAAGATTCAGGTCAAAGCAAACGCAG 879
|||||| |||||||||||| |||||| ||||||||||||||| ||||||||||||| |||
Sbjct 600 AAACACGGATTCAAACAAGCGCGAGACTATAGATCAAGATTCGGGTCAAAGCAAACCCAG 659
Query 880 TGACTCGGACACCAAACATGAAAGTCATGTTCCATTCTTCGACTTTTTATCCGTTGGAAA 939
| |||||| ||||||| |||||||||||||||| |||||||||||||| || ||||||||
Sbjct 660 TAACTCGGGCACCAAAAATGAAAGTCATGTTCCCTTCTTCGACTTTTTGTCTGTTGGAAA 719
Query 940 CTCTGCCTCCTAG 952
|||||||||||||
Sbjct 720 CTCTGCCTCCTAG 732
> Ahg920720 jgi|Araly1|920720|scaffold_102001.1
Length=787
Score = 370 bits (200), Expect = 1e-101
Identities = 276/313 (88%), Gaps = 4/313 (1%)
Strand=Plus/Plus
Query 227 ATGTGCAGCCGAGGCCATTGGAGACCAGCTGAAGACGAGAAGCTCAAG-GATCTTGTCGA 285
|||||||| ||||||||||||||||| || ||||| |||||||| ||| || || |||||
Sbjct 24 ATGTGCAGTCGAGGCCATTGGAGACCTGCAGAAGATGAGAAGCT-AAGAGAACTCGTCGA 82
Query 286 ACAATACGGTCCTCACAATTGGAACGCCATTGCTCTCAAGCTTC-CTGGTCGCTCTGGTA 344
||||| |||||||| |||||||||||||| |||| |||| || ||||||| ||||| |
Sbjct 83 ACAATTTGGTCCTCATAATTGGAACGCCATAGCTCAGAAGC-TCTCTGGTCGATCTGGCA 141
Query 345 AGAGTTGTAGATTGAGATGGTTTAATCAATTGGATCCAAGGATCAACCGAAACCCTTTCA 404
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 142 AGAGTTGTAGATTGAGATGGTTTAATCAATTGGATCCTAGGATTAACCGAAACCCTTTCA 201
Query 405 CGGAAGAAGAAGAAGAAAGACTTTTAGCGGCTCATCGGATCCATGGGAACAGATGGTCCA 464
|||| |||||||||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct 202 CGGAGGAAGAAGAAGAAAGGCTTTTAGCGTCTCATCGGATCCATGGGAATAGATGGTCTG 261
Query 465 TCATCGCAAGGCTTTTCCCTGGAAGAACTGATAACGCCGTCAAGAACCATTGGCACGTCA 524
| ||||| || ||||||| || |||| |||||||| || || ||||||||||||||||
Sbjct 262 TGATCGCTAGATTTTTCCCAGGTCGAACCGATAACGCTGTTAAAAACCATTGGCACGTCA 321
Query 525 TCATGGCTCGTCG 537
|||||||||||||
Sbjct 322 TCATGGCTCGTCG 334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45976237902
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5