BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G73410.1 Length=1231 Score E Sequences producing significant alignments: (Bits) Value Ahg908956 jgi|Araly1|908956|Al_scaffold_0002_2037 1186 0.0 Ahg920720 jgi|Araly1|920720|scaffold_102001.1 370 1e-101 > Ahg908956 jgi|Araly1|908956|Al_scaffold_0002_2037 Length=732 Score = 1186 bits (642), Expect = 0.0 Identities = 703/733 (96%), Gaps = 2/733 (0%) Strand=Plus/Plus Query 221 ATGATCATGTGCAGCCGAGGCCATTGGAGACCAGCTGAAGACGAGAAGCTCAAGGATCTT 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGATCATGTGCAGCCGAGGCCATTGGAGACCAGCTGAAGACGAGAAGCTCAAGGATCTT 60 Query 281 GTCGAACAATACGGTCCTCACAATTGGAACGCCATTGCTCTCAAGCTTCCTGGTCGCTCT 340 |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||| Sbjct 61 GTCGAACAATACGGTCCTCATAATTGGAACGCCATAGCTCTCAAGCTCCCTGGTCGATCT 120 Query 341 GGTAAGAGTTGTAGATTGAGATGGTTTAATCAATTGGATCCAAGGATCAACCGAAACCCT 400 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 121 GGTAAGAGTTGTAGATTGAGGTGGTTTAATCAATTGGATCCAAGGATAAACCGAAACCCT 180 Query 401 TTCACGGAAGAAGAAGAAGAAAGACTTTTAGCGGCTCATCGGATCCATGGGAACAGATGG 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTCACGGAAGAAGAAGAAGAAAGACTTTTAGCGGCTCATCGGATCCATGGGAACAGATGG 240 Query 461 TCCATCATCGCAAGGCTTTTCCCTGGAAGAACTGATAACGCCGTCAAGAACCATTGGCAC 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCCATCATCGCAAGGCTTTTCCCTGGAAGAACTGATAACGCCGTCAAGAACCATTGGCAC 300 Query 521 GTCATCATGGCTCGTCGCACACGCCAAACCTCTAAGCCTCGTCTTCTTCCCTCGACGACT 580 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 301 GTCATCATGGCTCGTCGCACACGTCAAACCTCTAAGCCTCGTCTTCTACCCTCGACGACT 360 Query 581 TCGTCTTCTTCTTTAATGGCGAGTGAACAAATCATGATGAGTTCTGGTGGTTATAATCAT 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 361 TCGTCTTCTTCTTTAATGGCGAGTGAACAAATCATGATGAGTTCTGGTGGTTATGATCGT 420 Query 641 AATTATAGTTCCGATGATCGGAAGAAAATATTTCCAGCAGACTTTATAAATTTCCCTTAC 700 ||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||| Sbjct 421 AATTATAGTTCCGGTGATAGGAAGAAAATATTACCAGCAGACGTTATAAATTTCCCTTAC 480 Query 701 AAATTCTCTCATATCAATCATCTTCACTTCCTAAAGGAGTTTTTCACCGGAAAGATCGCT 760 | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 481 CAGTTCTCTCATATCAATCATCTTCAGTTCCTAAAGGAGTTTTTCACCGGAAAGATCGCT 540 Query 761 TTAAATCACAAAGCAAATC-AGAGTAAAAAGCCTATGGAGTTCTACAATTTTCTACAAGT 819 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 541 TTAAATCACAAAGCAAA-CGAGAGTAAAAAGCCTATGGAGTTCTACAATTTTCTACAAGT 599 Query 820 AAACACAGATTCAAACAAGAGCGAGATTATAGATCAAGATTCAGGTCAAAGCAAACGCAG 879 |||||| |||||||||||| |||||| ||||||||||||||| ||||||||||||| ||| Sbjct 600 AAACACGGATTCAAACAAGCGCGAGACTATAGATCAAGATTCGGGTCAAAGCAAACCCAG 659 Query 880 TGACTCGGACACCAAACATGAAAGTCATGTTCCATTCTTCGACTTTTTATCCGTTGGAAA 939 | |||||| ||||||| |||||||||||||||| |||||||||||||| || |||||||| Sbjct 660 TAACTCGGGCACCAAAAATGAAAGTCATGTTCCCTTCTTCGACTTTTTGTCTGTTGGAAA 719 Query 940 CTCTGCCTCCTAG 952 ||||||||||||| Sbjct 720 CTCTGCCTCCTAG 732 > Ahg920720 jgi|Araly1|920720|scaffold_102001.1 Length=787 Score = 370 bits (200), Expect = 1e-101 Identities = 276/313 (88%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 227 ATGTGCAGCCGAGGCCATTGGAGACCAGCTGAAGACGAGAAGCTCAAG-GATCTTGTCGA 285 |||||||| ||||||||||||||||| || ||||| |||||||| ||| || || ||||| Sbjct 24 ATGTGCAGTCGAGGCCATTGGAGACCTGCAGAAGATGAGAAGCT-AAGAGAACTCGTCGA 82 Query 286 ACAATACGGTCCTCACAATTGGAACGCCATTGCTCTCAAGCTTC-CTGGTCGCTCTGGTA 344 ||||| |||||||| |||||||||||||| |||| |||| || ||||||| ||||| | Sbjct 83 ACAATTTGGTCCTCATAATTGGAACGCCATAGCTCAGAAGC-TCTCTGGTCGATCTGGCA 141 Query 345 AGAGTTGTAGATTGAGATGGTTTAATCAATTGGATCCAAGGATCAACCGAAACCCTTTCA 404 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 142 AGAGTTGTAGATTGAGATGGTTTAATCAATTGGATCCTAGGATTAACCGAAACCCTTTCA 201 Query 405 CGGAAGAAGAAGAAGAAAGACTTTTAGCGGCTCATCGGATCCATGGGAACAGATGGTCCA 464 |||| |||||||||||||| ||||||||| ||||||||||||||||||| |||||||| Sbjct 202 CGGAGGAAGAAGAAGAAAGGCTTTTAGCGTCTCATCGGATCCATGGGAATAGATGGTCTG 261 Query 465 TCATCGCAAGGCTTTTCCCTGGAAGAACTGATAACGCCGTCAAGAACCATTGGCACGTCA 524 | ||||| || ||||||| || |||| |||||||| || || |||||||||||||||| Sbjct 262 TGATCGCTAGATTTTTCCCAGGTCGAACCGATAACGCTGTTAAAAACCATTGGCACGTCA 321 Query 525 TCATGGCTCGTCG 537 ||||||||||||| Sbjct 322 TCATGGCTCGTCG 334 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45976237902 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5