BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73440.1
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352812 jgi|Araly1|352812|fgenesh1_pg.C_scaffold_6003405 438 4e-122
> Ahg352812 jgi|Araly1|352812|fgenesh1_pg.C_scaffold_6003405
Length=744
Score = 438 bits (237), Expect = 4e-122
Identities = 275/293 (94%), Gaps = 3/293 (1%)
Strand=Plus/Plus
Query 531 GAAGCGATAAAGAGGCTGCAAC--T-ATGAAGAAGAAAAGACCGGAATTGATGAGCAAGA 587
||| |||||||||||||||||| | | ||||||||||| |||||| |||||||||||||
Sbjct 452 GAAACGATAAAGAGGCTGCAACTTTGAAGAAGAAGAAAACACCGGATTTGATGAGCAAGA 511
Query 588 CGCAGATGACACAGGATGAATTGGTCATGTACTTCTGTCAGTTTGATGAAGGTGGAAAAG 647
||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||
Sbjct 512 TGCAGATGACACAGGATGAATTGGTCATATACTTCTGTCTGTTTGATGAAGCTGGAAAAG 571
Query 648 GGTTCATTACTCTGAGAGATGTGGCGAAAATGGCAACTGTGCATGACTTCACATGGACAG 707
| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 572 GATTCATTACTCTGAGAGATGTGGCGAAAATGGCGACGGTGCATGACTTCACATGGACAC 631
Query 708 AAGAGGAATTACAAGACATGATTCGTTGCTTTGACATGGACAAGGACGGAAAGCTAAGCT 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 AAGAGGAATTACAAGACATGATTCGTTGCTTTGACATGGACAAGGACGGAAAGCTAAGCT 691
Query 768 TGGATGAGTTCAGGAAGATTGTGTCGCGATGTCGCATGTTGAAAGGTTCTTGA 820
|||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 692 TGGATGAGTTCAGGAAGATTGTTTCGCGATGTCGCATGTTGAAAGAATCTTGA 744
Score = 337 bits (182), Expect = 2e-91
Identities = 358/435 (82%), Gaps = 44/435 (10%)
Strand=Plus/Plus
Query 99 GAGAGAGTTCGAGCTCGAGTTCCGGC-AACGAATCGGAGCCAACAAAGGGGACGATCTCG 157
||||||| || || | ||||||||| || ||||||||| | ||||||||| |||||||
Sbjct 23 GAGAGAGCTC-AG-T-AAGTTCCGGCGAA-GAATCGGAG-C--CAAAGGGGAAGATCTCG 75
Query 158 AAATATGAGAAGCAGAGGTTGTCAAGGATCGCTGAGAACAAAGCGAGATTGGATGCACTC 217
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 76 GAATATGAGAAGCAGAGGTTCTCAAGGATCGCTGAGAACAAAGCGAGGTTGGATGCCCTC 135
Query 218 GGCATCTCTAAAGCCGCCAAGGCTCTTCTGTCACCATCTCCAGTTTCGAAAAAACGTAGA 277
||||||||||||||||||||||||||| || | ||||||||| |||||||||||||||||
Sbjct 136 GGCATCTCTAAAGCCGCCAAGGCTCTTGTGGCTCCATCTCCAATTTCGAAAAAACGTAGA 195
Query 278 GTTAAGCGGAATTCCGGTGAAGAAGACGATGATTATACACCCGTAATCGCCGACGGTGAT 337
|| ||||||||||||||||||||||||||||||||||| |||| || |||||| ||||
Sbjct 196 GTAAAGCGGAATTCCGGTGAAGAAGACGATGATTATACTCCCGCAAACGCCGA---TGAT 252
Query 338 GGTGATGAGGACGATGACGAAGTAGAAGAAATAGACGAAGACGAGGAGTTTCTGTGTAAA 397
| ||| || ||||| | || || | || | | | | || ||||||
Sbjct 253 GATGACGAAGACGA-G--GA-GTTTCTGGG-TA-ATT----C-A--A----CT-TGTAAA 294
Query 398 AGAAAGAACAAGTCCTCTGCATCCAAGAGAAAAGTCTCATCTAGGAAGATTTTGAATACA 457
|||||| | |||||||||||||||||||||||| ||||| ||||||| ||||||||
Sbjct 295 AGAAAG-----G-CCTCTGCATCCAAGAGAAAAGTCTTATCTAAGAAGATTGTGAATACA 348
Query 458 TCAGTTTCCCTTGGTGAGGATGATGATGACTTAGACAAGGCAATAGCGCTTTCTCTACAG 517
|||| | | |||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 349 TCAGAT------GATGAG--T-ACGATGACTTAGACAAGGCAATAGCGCTTTCTCTACAG 399
Query 518 GGCTCTGTTGCAGGA 532
| |||||||||||||
Sbjct 400 GACTCTGTTGCAGGA 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54354779615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5