BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73500.1
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926721 jgi|Araly1|926721|scaffold_202282.1 1548 0.0
Ahg472055 jgi|Araly1|472055|fgenesh2_kg.1__2009__AT1G18350.1 278 1e-73
> Ahg926721 jgi|Araly1|926721|scaffold_202282.1
Length=980
Score = 1548 bits (838), Expect = 0.0
Identities = 935/980 (95%), Gaps = 13/980 (1%)
Strand=Plus/Plus
Query 161 tcttcttctctctattcCATGGCTTTAGTACGTGAACGTCGTCAGCTAAATCTCCGTCTT 220
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 5 TCTTCTTCTCTCT-TTCCATGGCTTTAGTTCGTGAACGTCGTCAGCTAAATCTCCGTCTT 63
Query 221 CCTCTTCCTCCAATCTCCGACCGCCGCTTCTCCACCTCTTCCTCCTCAGCCACCACCACC 280
| ||||||||| || |||||||||||||||| | | || |||||||| | ||||||||||
Sbjct 64 CATCTTCCTCCGATTTCCGACCGCCGCTTCT-C-CGTC-TCCTCCTCCGTCACCACCACC 120
Query 281 ACCGTCGCTG--------G-CTGTAACGGAATCTCCGCTTGTGATCTCGAGAAACTCAAC 331
|||||||||| | |||||||||||||||||| |||||||||| |||||||||
Sbjct 121 ACCGTCGCTGCTACCTCCGCCTGTAACGGAATCTCCGCCGGTGATCTCGATAAACTCAAC 180
Query 332 GTTCTCGGATGCGGAAACGGCGGGATTGTTTACAAAGTCCGTCATAAAACCACATCGGAG 391
|||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 181 GTTCTCGGATGCGGTAACGGCGGGATTGTTTATAAAGTCAGTCATAAAACCACATCGGAG 240
Query 392 ATCTACGCTTTGAAAACAGTTAACGGCGACATGGATCCGATTTTCACAAGACAGTTGATG 451
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 241 ATCTACGCTTTGAAAACAGTTAACGGCGACATGGATCCGATTTTCACAAGGCAATTGATG 300
Query 452 CGAGAGATGGAGATTCTCCGCCGTACAGATTCACCGTACGTCGTTAAGTGTCACGGAATC 511
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 301 CGAGAGATGGAGATTCTCCGCCGTATAGATTCGCCGTACGTCGTTAAGTGTCACGGAATC 360
Query 512 TTCGAGAAACCTGTCGTCGGTGAAGTATCGATTCTAATGGAGTATATGGACGGCGGAACC 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCGAGAAACCTGTCGTCGGTGAAGTATCGATTCTAATGGAGTATATGGACGGCGGAACC 420
Query 572 CTAGAATCACTACGCGGCGGTGTAACGGAGCAAAAACTCGCCGGATTCGCTAAACAGATC 631
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 421 CTAGAATCACTACGCGGCGGCGTAACGGAGCAAAAACTCGCCGGATTCGCTAAGCAGATC 480
Query 632 TTAAAAGGATTAAGCTATTTACACGCTCTTAAGATCGTTCATCGTGATATCAAACCGGCG 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTAAAAGGATTAAGCTATTTACACGCTCTTAAGATCGTTCATCGTGATATCAAACCGGCG 540
Query 692 AATCTTCTTCTCAATTCGAAAAACGAAGTTAAAATCGCTGATTTCGGAGTTAGTAAGATC 751
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 AATCTGCTTCTCAATTCGAAAAACGAAGTTAAAATCGCTGATTTTGGAGTTAGTAAGATC 600
Query 752 TTAGTCCGATCATTAGATTCGTGTAATTCGTATGTTGGTACTTGTGCTTATATGAGTCCG 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTAGTCCGATCATTAGATTCGTGTAATTCGTATGTTGGTACTTGTGCTTATATGAGTCCG 660
Query 812 GAGAGGTTTGATTCGGAATCTTCCGGTGGAAGCTCTGATATCTACGCCGGAGATATCTGG 871
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 GAGAGGTTTGATTCCGAATCTTCCGGTGGAAGTTCTGATATCTACGCCGGAGATATCTGG 720
Query 872 AGTTTCGGATTGATGATGCTTGAGCTTCTCGTTGGTCATTTTCCTTTGCTTCCGCCGGGA 931
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 721 AGTTTCGGATTGATGATGCTTGAGCTTCTCGTTGGTCATTTTCCGTTACTTCCGCCGGGA 780
Query 932 CAGAGACCTGATTGGGCGACGTTGATGTGCGCGGTGTGTTTTGGAGAACCGCCGCGAGCG 991
||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 781 CAGAGACCTGACTGGGCTACGTTAATGTGCGCGGTGTGTTTCGGAGAACCGCCGCGAGCG 840
Query 992 CCGGAGGGATGTTCTGAAGAGTTTAGGAGCTTCGTTGAGTGTTGTCTCCGTAAAGATTCG 1051
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 841 CCGGAGGGATGTTCTGAAGAGTTTAGGAGCTTCGTTGAGTGTTGTCTACGTAAAGATTCG 900
Query 1052 AGTAAGCGATGGACGGCGCCGCAGCTTCTTGCTCATCCTTTTCTCCGGGAAGATCTTTGA 1111
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 901 AGTAAGCGATGGACGGCGTCGCAGCTTCTTGCTCATCCTTTTCTCCGGGAAGATCTCTGA 960
Query 1112 TTCGATTCCTTTTGTAACAG 1131
||||||||||||||||||||
Sbjct 961 TTCGATTCCTTTTGTAACAG 980
> Ahg472055 jgi|Araly1|472055|fgenesh2_kg.1__2009__AT1G18350.1
Length=833
Score = 278 bits (150), Expect = 1e-73
Identities = 233/273 (85%), Gaps = 6/273 (2%)
Strand=Plus/Plus
Query 834 CCGGTGGAAGCTCTGATATCTACGCCGGAGATATCTGGAGTTTCGGATTGATGATGCTTG 893
|||| | || ||| ||| | ||||| || ||||||||||||||||||||||||||||| |
Sbjct 506 CCGGAGAAAACTCCGATGTATACGCAGGCGATATCTGGAGTTTCGGATTGATGATGCTCG 565
Query 894 AGCTTCT-CGTTGGTCATTTTCCTTTGCTTCCGCCGGGACAGAGACCTGATTGGGCGACG 952
|||| || ||| || |||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 566 AGCT-CTTCGTCGGACATTTTCCGTTGCTTCCTCAGGGACAGAGACCTGATTGGGCGACG 624
Query 953 TTGATGTGCGCGGTGTGTTTTGGAGAACCGCCGCG-AGCGCCGGAGGGATGTTCTGAAGA 1011
| |||||||| |||||||| ||||| || ||||| | ||||||| |||||||| || ||
Sbjct 625 CTAATGTGCGCCGTGTGTTTCGGAGAGCCACCGCGTA-CGCCGGAAGGATGTTCCGACGA 683
Query 1012 GTTTAGGAGCTTCGTTGAGTGTTGTCTCCGTAAAGATTCGAGTAAGCGATGGACGGCGCC 1071
||||||||| || ||||| ||||||||||||||||| |||||| || | ||||||||| |
Sbjct 684 GTTTAGGAGTTTTGTTGATTGTTGTCTCCGTAAAGAATCGAGTGAGAGGTGGACGGCGTC 743
Query 1072 GCAGCTTCTTGCTCA-TCCTTTTCTCCGGGAAG 1103
||||||||| | ||| || ||||||||| ||||
Sbjct 744 GCAGCTTCTCGGTCACTC-TTTTCTCCGTGAAG 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53821516185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5