BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73510.1
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926722 jgi|Araly1|926722|scaffold_202283.1 542 2e-153
> Ahg926722 jgi|Araly1|926722|scaffold_202283.1
Length=619
Score = 542 bits (293), Expect = 2e-153
Identities = 529/636 (83%), Gaps = 43/636 (7%)
Strand=Plus/Plus
Query 52 AATTCGATACAAAACGAAACATGGCGATAGAGAAACAAGAGATTAACGAGTCGTC-GATC 110
|||| ||||| ||||||||||||||||||||||||||||| ||||||||||| | ||||
Sbjct 2 AATT-GATACGAAACGAAACATGGCGATAGAGAAACAAGATATTAACGAGTC-CCAGATC 59
Query 111 GGATTCAACTTAATCTCCGAGAAACGTCGTCATAACAAGACCCACGATGACAAACCCTAC 170
||| ||||||| ||||| || || ||||| || ||||| || | ||||||| || |
Sbjct 60 GGACTCAACTTGTTCTCC---AAGCGACGTCACAATAAGACGGACTACGACAAACTCTGC 116
Query 171 TTGGTCGATTCTCTGACATTAAACTCC-TGGGCATCACAACCATCTACTGATGAAATCAT 229
|| || |||||| |||||| || ||| |||| ||||| | |||||||||||| ||||||
Sbjct 117 TTCCTCAATTCTCCGACATTCAATTCCTTGGG-ATCACTATCATCTACTGATGGAATCAT 175
Query 230 CATCATCGATGACGATGAGGAGAAGGAGGTAACCCTAGAGCCGAAGAGGAAGAAGCCGAG 289
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 176 CATCATCGATGACGAT-----G-AGGAGGTAACCCTAGAGCCGAAGAGGAAGAAGCCGAG 229
Query 290 ATTAGGGTCTTGGTGGGACAACGTCGAAGCCGTGGACGAATTATGTTGCGTGGTCAAGGG 349
|||||||||||||||||||||||||||| || | ||||||||| ||||||||||||||||
Sbjct 230 ATTAGGGTCTTGGTGGGACAACGTCGAACCCTTCGACGAATTAAGTTGCGTGGTCAAGGG 289
Query 350 ATCACCGCCGAAGGCAAAGGAGGACAATGGTGTTGCATCAAAAGCGGATTCATATTTTTC 409
|||||| || ||||||||| ||||| | ||||||||||| ||| ||||||| ||||||
Sbjct 290 GTCACCG--GA-GGCAAAGGAAGACAACGATGTTGCATCAAGAGCAGATTCATGTTTTTC 346
Query 410 TTCTACTGATCTTCACGAGACGATGGAGAACAAGAAGATTAACGAGGATAAGAGATC-AC 468
||||||||||| ||||||||||| | ||||| || ||| | |||| | ||| |
Sbjct 347 TTCTACTGATCCTCACGAGACGAAGAAGAAC--GACGATGA--GAGG-TCTCT-ATCGAA 400
Query 469 TACCGGAGAAGGATAAAGACGAGAGTACTGTTGGTGAGAGTAATACTAAGAATAAGGGT- 527
|| ||||||| || ||||||||| || |||||||||| |||| ||||| ||||
Sbjct 401 TA----AGAAGGAGAACGACGAGAGT---GTCGGTGAGAGTAGGACTAGGAATAGGGGTT 453
Query 528 ATGAACACGTGACGCTTGAGGATTTAGGGGTTTCGGTGGAAGATCTCAAGAGTGTCCCAT 587
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 ATGAACACGTGACCCTTGAGGATTTAGGGGTTTCGGTGGAAGATCTCAAGAGTGTCCCAT 513
Query 588 GGGAAGCGTTTGAATTTGATTCGACATGGGAGATTAGGTCGGATCCATGG-TATGGTGGA 646
|||||||||| | || | ||||||||||||||||||||||||||| | | |||
Sbjct 514 GGGAAGCGTT--AC----ATCCTACATGGGAGATTAGGTCGGATCCATGGCT-TAATGGC 566
Query 647 TACATGGAAGAC-TTG-TCTCTCTTTGATTTTAATT 680
|| || || ||| ||| ||||||||| | |||||||
Sbjct 567 TATATTGAGGACCTTGGTCTCTCTTT-AGTTTAATT 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29697752343
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5