BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73530.1
Length=722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476486 jgi|Araly1|476486|fgenesh2_kg.2__1616__AT1G73530.1 894 0.0
> Ahg476486 jgi|Araly1|476486|fgenesh2_kg.2__1616__AT1G73530.1
Length=599
Score = 894 bits (484), Expect = 0.0
Identities = 562/600 (94%), Gaps = 4/600 (1%)
Strand=Plus/Plus
Query 1 CGGAAACAATGGCAATTAGCTTAGGTAGAGTCGTCGTTCCGTCGTGTACCATTTCTGGAG 60
||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||
Sbjct 1 CGGAAACAATGGCAATTAGCTTAGGGAGAGTCGTCGTTCCGTCGTGTACGATTCCTGGAG 60
Query 61 ATCGGCTCTTCATACCTAACTTCTCGGCCATCTGCAGCGTCTCTTGTGGACGAATCAATG 120
||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 ATCGGCTCTTCGGACCAAACTTCTCGGCCATCTGCAGCGTCTCTTGCGGACGAATCAATG 120
Query 121 TCGGAACCGGCGTAATTTCTGCTCGTCGACGCCGTGACATTGGCGGGGTTTTAATATCTA 180
||||||||||||| |||| |||||| ||||||||||||||||||||| |||||||| |||
Sbjct 121 TCGGAACCGGCGTCATTTTTGCTCGGCGACGCCGTGACATTGGCGGGTTTTTAATAACTA 180
Query 181 GCTGTCTCTCTA-CGGATTCATCTTCTTCTCCACCGTCTTCTTCTTCTGGGCCGAAGACG 239
|||||||||| | ||||||| ||||||||||||||||||||||| || ||| ||||||||
Sbjct 181 GCTGTCTCTC-ACCGGATTCGTCTTCTTCTCCACCGTCTTCTTCCTCCGGGACGAAGACG 239
Query 240 AAACTCTATGTCAGTGGGCTTTCTTTCCGCACAACTGAAGATACCTTACGGGATACATTT 299
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 240 AAACTCTATGTCAGTGGGCTTTCTTTCCGCACAACAGAAGATACCTTACGGGATACTTTT 299
Query 300 GAACAGTTTGGGAACCTTATACACATGAACATGGTGATGGATAAAGTAGCTAATAGACCA 359
||||||||||| || ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 300 GAACAGTTTGGCAAGCTTATACACATGAACTTAGTGATGGATAAAGTAGCTAATAGACCA 359
Query 360 AAAGGTTTTGCTTTCCTACGGTATGAAACAGAGGAGGAGGCTATGAAAGCTATTCAAGGG 419
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGAGGTTTTGCTTTCCTACGGTATGAAACAGAGGAGGAGGCTATGAAAGCTATTCAAGGG 419
Query 420 ATGCACGGAAAGTTTTTGGATGGAAGGGTAATATTCGTGGAGGAAGCTAAAACCAGATCA 479
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 420 ATGCATGGAAAGTTTTTGGATGGAAGGGTTATATTTGTGGAGGAAGCTAAAACCAGATCA 479
Query 480 GATATGTCCAGAGCAAAACCCAGACGAGACTTCCCCAAACCTCAATCCAAACCTCGCACC 539
||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 480 GATATCTCCAGAGCTAAACCCAGACCAGACTTCCCCAAACCTCAATCCAAACCTCGCACC 539
Query 540 TTTCGTACCTGGTAGCTCTTTTGATTTTGTCTTC--ATACTGTGTAATGAATTGTATAAT 597
||||| || |||||||| ||||||||||||||| |||||||||||||||||||| |||
Sbjct 540 TTTCGGACGTGGTAGCTGTTTTGATTTTGTCTTATTATACTGTGTAATGAATTGTAAAAT 599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26571673149
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5