BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73540.1
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908965 jgi|Araly1|908965|Al_scaffold_0002_2046 782 0.0
Ahg312784 jgi|Araly1|312784|fgenesh1_pm.C_scaffold_1001564 348 5e-95
> Ahg908965 jgi|Araly1|908965|Al_scaffold_0002_2046
Length=585
Score = 782 bits (423), Expect = 0.0
Identities = 470/493 (95%), Gaps = 2/493 (0%)
Strand=Plus/Plus
Query 227 GTACCGACACCGAGTGAGAAAGTTGTCTCTTTGGTATCTCGAACCGGACGAGATCTCCAA 286
||||||||||||| |||||||| ||||||||| || ||||| |||||||||||||| |||
Sbjct 88 GTACCGACACCGATTGAGAAAGATGTCTCTTTAGTCTCTCGTACCGGACGAGATCTGCAA 147
Query 287 CGTTACAACACCGCAGGGTATCGTCAAGTCGTCGGATGTGTACCATATAGATACAAGAAA 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 CGTTACAACACCGCAGGGTATCGTCAAGTCGTCGGATGTGTACCATATAGATACAAGAAA 207
Query 347 CACGGAGGAGGAGAAATTGAAGTGCTTTTGATAAGTGCACAGAAGAAAGGGAAAGGAATG 406
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 CATGGTGGAGGAGAAATTGAAGTGCTTTTGATAAGTGCACAGAAGAAAGGGAAAGGAATG 267
Query 407 TTATTACCAAAAGGAGGTTGGGAGATTGATGAATCAATAGAAGAAGCTGCTTTAAGAGAG 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 TTATTACCAAAAGGAGGTTGGGAGATTGATGAATCAATAGAAGAAGCTGCTTTAAGAGAG 327
Query 467 ACAATTGAAGAAGCTGGTGTTACGGGTCAGCTTGAAGAATCACTTGGGAAATGGCAATAC 526
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 328 ACGATTGAAGAAGCTGGTGTTACGGGTCATCTTGAGGAATCACTTGGGAAATGGCAATAC 387
Query 527 AAAAGCAAAAGACATACTATGATTCATGATGGTCATATGTTTCCTTTGCTTGTTAGTCAG 586
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 388 AAAAGCAAAAGACATACTATGATTCATGATGGTTACATGTTTCCTTTGCTTGTTAGTCAA 447
Query 587 CAGTTTGAGATATGGCCTGAATCTGA-ATTCAGACAACGCAAATGGGTTTCTTTGTCTGA 645
||||||||| ||||||||| |||| ||| |||||||| ||||||||||||||||||||
Sbjct 448 CAGTTTGAGCGGTGGCCTGAAGCTGACATT-AGACAACGTAAATGGGTTTCTTTGTCTGA 506
Query 646 AGCGATTGAGTTGTGTCAGAATTCGTGGATGAGAGAAGCTTTGGAAGCTTTCATTAACCG 705
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 507 AGCGATTGAGTTGTGTCAGAATTCGTGGATGAGAGAAGCTTTGGAAGCTTTTATTAACCG 566
Query 706 GAAATGCCAGACC 718
|||||| ||||||
Sbjct 567 GAAATGTCAGACC 579
> Ahg312784 jgi|Araly1|312784|fgenesh1_pm.C_scaffold_1001564
Length=624
Score = 348 bits (188), Expect = 5e-95
Identities = 399/495 (81%), Gaps = 38/495 (8%)
Strand=Plus/Plus
Query 242 GAGAAAGTTGTCTCTTTGGTATCTCGAACCGGACGAGATCTCCAACGTTACAACACCGCA 301
|||||||||||||||||||| ||||| ||||| || ||| | || |||||| | | |||
Sbjct 112 GAGAAAGTTGTCTCTTTGGTCTCTCGTACCGGTCGCGATTTGCAGCGTTACGATAACGCT 171
Query 302 GGGTATCGTCAAGTCGTCGGATGTGTACCATATAGATACAAGAAACACG--G---A-GG- 354
|| |||||||||||||||||||||||||| || |||||||||||||| | | | ||
Sbjct 172 GGCTATCGTCAAGTCGTCGGATGTGTACCGTACAGATACAAGAAACAAGAAGTCAATGGA 231
Query 355 A--G------GAGAAATTGAAGTGCTT-TTGATAAGTGCACAGAAGAAAGGG-AAAGGAA 404
| | |||||| |||| ||| ||| | ||||| | | |||||| |||||||
Sbjct 232 ATTGAAACCCAAGAAATCCAAGTTCTTCTTG-TCAGTGCTC---A-AAAGGGCAAAGGAA 286
Query 405 TGTTATTACCAAAAGGAGGTTGGGAGATTGATGAATCAATAGAAGAAGCTGCTTTAAGAG 464
||||||| ||||||||||||||||||| ||||||||||| || ||||| ||||| ||||
Sbjct 287 TGTTATTTCCAAAAGGAGGTTGGGAGACGGATGAATCAATGGAGGAAGCAGCTTTGAGAG 346
Query 465 AGACAATTGAAGAAGCTGGTGTTACGGGTCAGCTTGAAGAATCA-CTTGGGAAATGGCAA 523
||||||| |||||||| ||||| ||||| |||| |||||| | |||||||||||||||
Sbjct 347 AGACAATCGAAGAAGCGGGTGTAACGGGAGAGCTCGAAGAA-AAGCTTGGGAAATGGCAA 405
Query 524 TACAAAAGCAAAAGACATA-CTATGATTCATGATGG-TCATATGTTTCCTTTGCTTGTTA 581
|||||||||||||||||| | || ||||| ||||| | | |||||| ||||||||||||
Sbjct 406 TACAAAAGCAAAAGACATTGC-ATAATTCACGATGGAT-ACATGTTTGCTTTGCTTGTTA 463
Query 582 GTCA-GCAGTTTGAGATATGGCCTGAATCTGA-ATTCAGACAACGCAAATGGGTTTCTTT 639
|||| | |||| ||| ||||||||| | || ||| |||||||||| |||||| |||
Sbjct 464 GTCAAG-AGTTCGAGCGATGGCCTGAGGCGGAGATT-AGACAACGCAGATGGGTAAGTTT 521
Query 640 GT-CTGAAGCGATTGA-GTTGTGTCAGAATTCGTGGATGAGAGAAGCT-TTGGAAGCTTT 696
| | ||||| | || || |||||||||| |||||||||||||||| ||| |||| ||
Sbjct 522 GGAC-GAAGCAAGAGAAGTA-TGTCAGAATTGGTGGATGAGAGAAGCTCTTG-AAGCATT 578
Query 697 CATTAACCGGAAATG 711
|||||||| ||||||
Sbjct 579 CATTAACCTGAAATG 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35111206557
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5