BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G73550.1

Length=509
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316296 jgi|Araly1|316296|fgenesh1_pm.C_scaffold_2001329           590    4e-168


> Ahg316296 jgi|Araly1|316296|fgenesh1_pm.C_scaffold_2001329
Length=468

 Score =  590 bits (319),  Expect = 4e-168
 Identities = 401/441 (91%), Gaps = 4/441 (1%)
 Strand=Plus/Plus

Query  1    ATGAATATCACAAGAATTCTCGGTGTAGTCACCACCGTCGTCATTCTCTACTCCGTGCAA  60
            |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct  1    ATGAATATCACAAGAATTTTCGGTGTAGTCACCATCGTCGTCATTCTCTACTCCGTGCAA  60

Query  61   GTCACAGCACAATTTTTCGGAGACGTTCAACAGGCAATGAGATGCGTAGCAAAACTAATG  120
            || ||||||||||| |||||||| ||||||||||||||| |||| ||| |||||||  ||
Sbjct  61   GTTACAGCACAATTATTCGGAGATGTTCAACAGGCAATGCGATGTGTATCAAAACTGTTG  120

Query  121  CCATGTCAACCGTACATTCACTTGTCGATTCCTCCGCCGCCATTGTGTTGTAATCCGATG  180
            ||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||
Sbjct  121  CCATGTCAACCGTACATTCACTTGTCGATTCCTCCGCCGCCGTGGTGTTGCAATCCGATG  180

Query  181  AAACAGATCGCCGAG-AAGGATGTGTCGTGTCTATGCACCGCCTTCAAACATCCAGACTT  239
            ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AAACAGATCGCTGAGCAAG-ATGTGTCGTGTCTATGCACCGCCTTCAAACATCCAGACTT  239

Query  240  GCTCAGGTTCCTTGCTCTCACCAAAGAGAACGCTATTAAAATCCTCGACTCATGTGGTAT  299
            ||| |||||||||||||||||||||||||||||| ||||  ||||  |||||||||||||
Sbjct  240  GCTTAGGTTCCTTGCTCTCACCAAAGAGAACGCTCTTAATCTCCTTAACTCATGTGGTAT  299

Query  300  TAATCATGATCCGTCAGTCTGCAACAAGACTAATCCTTCTTCGCCTGCTGCGTTGCCTGA  359
            ||||||||||  ||||   |||||||||| ||||||||||||||||||||||||||||||
Sbjct  300  TAATCATGATTTGTCACAGTGCAACAAGATTAATCCTTCTTCGCCTGCTGCGTTGCCTGA  359

Query  360  AGCTGCGACTAGTGGGAATTCTTTCAGCACCAAGAAAAACACAGCTCTAGCCATCActtt  419
            ||||||||| || |||||||||  |||||||||||||||  |||||||| |||||| |||
Sbjct  360  AGCTGCGACCAGCGGGAATTCTGGCAGCACCAAGAAAAATGCAGCTCTATCCATCAGTTT  419

Query  420  tttcggatttt-cttttgtat  439
            ||| ||||||  |||| ||||
Sbjct  420  TTTGGGATTTAGCTTT-GTAT  439



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18505460665


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5