BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G73560.1

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476489 jgi|Araly1|476489|fgenesh2_kg.2__1619__AT1G73560.1         643    0.0  


> Ahg476489 jgi|Araly1|476489|fgenesh2_kg.2__1619__AT1G73560.1
Length=456

 Score =  643 bits (348),  Expect = 0.0
 Identities = 422/458 (92%), Gaps = 4/458 (1%)
 Strand=Plus/Plus

Query  15   AATGGAGATTAACAAATTTCTGGCCGTAGTCGTAGCCGTCGTGGTCCTCTACTCCGTCG-  73
            ||||||||||| ||||||||||||||||||||||||||| || || ||||||||||| | 
Sbjct  1    AATGGAGATTAGCAAATTTCTGGCCGTAGTCGTAGCCGTTGTAGTTCTCTACTCCGT-GC  59

Query  74   AAGCGACGGCACAAGGAGGAAACCCTCAGTTGACGGCTTGTC-TGCAGAAACTGCTGCCG  132
            | || || |||||||||||||||||||||  || |||||| | |||| ||| || |||||
Sbjct  60   AGGCTACAGCACAAGGAGGAAACCCTCAGACGATGGCTTG-CGTGCAAAAATTGGTGCCG  118

Query  133  TGTCAGCCGTACATACATTCGCTGAATCCGCCTCCTCCGCCATCGTGTTGCGGGCCGATG  192
            |||||||||||||||||  || |||||||| ||||||||||||||||||||||||| |||
Sbjct  119  TGTCAGCCGTACATACACACGGTGAATCCGTCTCCTCCGCCATCGTGTTGCGGGCCAATG  178

Query  193  AAAGAGATCGTAGAGAAAGACGCACCGTGTTTATGCATCGCTTTTAACAATCCGGAGGTG  252
            ||||||||||||||||||||||| ||||||||||||  || ||||||||| |||||| ||
Sbjct  179  AAAGAGATCGTAGAGAAAGACGCGCCGTGTTTATGCGCCGTTTTTAACAACCCGGAGATG  238

Query  253  CTCAAAGCCCTAAACCTCACCAAAGAGAACGCTCTCCTACTTCCCAAGGCATGTGGAGTT  312
            |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct  239  CTCAAAGCCCTAAACCTCACCAAAGAGAACGCTCTCGTGCTTCCCAAGGCATGTGGAGTT  298

Query  313  AATCCTGACGTTTCACTCTGCTCCAAAATAGCCACTCCTTCGCCTATTGCGTCGCCGGGA  372
            ||||||||||||||| |||||||||| || ||| |||||||||||| |||||||||||||
Sbjct  299  AATCCTGACGTTTCAGTCTGCTCCAAGATCGCCTCTCCTTCGCCTACTGCGTCGCCGGGA  358

Query  373  TCAACCAATGGAACCTCTTCCGCTTCAACTATCAGCTTCAATCGATTTAGCTTTCTGTCT  432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  359  TCAACCAATGGAACCTCTTCCGCTTCAACTATCAGCTTCAATCGATTTAGCTTTCTGTCT  418

Query  433  GCTTTTGTGGCAATGATCTTCTTCTGATTATGTCATTT  470
            ||||||||||||||||||||||| ||||||||||||||
Sbjct  419  GCTTTTGTGGCAATGATCTTCTTTTGATTATGTCATTT  456



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19383039212


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5