BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73570.1
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476490 jgi|Araly1|476490|fgenesh2_kg.2__1620__AT1G73570.1 1607 0.0
Ahg920751 jgi|Araly1|920751|scaffold_102032.1 1038 0.0
> Ahg476490 jgi|Araly1|476490|fgenesh2_kg.2__1620__AT1G73570.1
Length=1860
Score = 1607 bits (870), Expect = 0.0
Identities = 953/993 (96%), Gaps = 6/993 (1%)
Strand=Plus/Plus
Query 826 TTTAATGGCCTT-GGTTACTTGTATGTCAAAGGCTATGGAGTAGATAAGAGAAACTACAC 884
|||||||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 871 TTTAATGG-CTTGGGTTACTTGTATGTTAAAGGCTATGGAGTAGATACGAGAAACTACAC 929
Query 885 TAAGGCGAGAGAATACTTTGAGATGGCTGCTAATAATGAAGATCCTAGCGGGCATTATAA 944
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 TAAGGCGAAAGAATACTTTGAGATGGCTGCTAATAATGAAGATCCTAGCGGGCATTATAA 989
Query 945 CCTTGGAGTGTTGTATCTTAAAGGCACTGGAGTCAAGAAGGATGTGAGGCATGCAACCAA 1004
|||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||
Sbjct 990 CCTTGGAGTGTTGTATCTTAAAGGCATTGGAGTGAAGAAGGATGTGAGGCGTGCAACCAA 1049
Query 1005 ATATTTCTTTGTTGCTGCCAATGCTGGTCAACCAAAGGCTTTTTATCAACTCGCCAAGAT 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 ATATTTCTTTGTTGCTGCCAATGCTGGTCAACCAAAGGCTTTTTATCAACTCGCCAAGAT 1109
Query 1065 GTTCCATACAGGCGTTGGACTTACAAAGAACTTGGAAATGGCGACAACTTTTTATAAGCT 1124
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1110 GTTCCATACGGGCGTTGGGCTTACAAAGAACTTGGAAATGGCGACGACTTTTTATAAACT 1169
Query 1125 AGTAGCAGAAAGAGGACCATGGAGTTCTCTCTCTAGATGGGCTCTTGAAGCTTACTTGAA 1184
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1170 AGTAGCAGAAAGAGGACCATGGAGTTCTCTCTCTAGATGGGCTCTTGAAGCCTACTCGAA 1229
Query 1185 AGGTGATGTGGGAAAGGCTTTTATATTGTATTCGAGAATGTCAGAGCTCGGTTATGAAGT 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 AGGTGATGTGGGAAAGGCTTTTATATTGTATTCGAGAATGTCAGAGCTCGGTTATGAAGT 1289
Query 1245 AGCACAAAGTAATGCTGCCTGGATCGTCGATAAATACGGGGAAAGAAGCATGTGCATGGG 1304
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1290 AGCACAAAGTAATGCTGCCTGGATCCTCGATAAATATGGGGAAAGAAGCATGTGCATGGG 1349
Query 1305 AGTGTATGGGTTTTGCACAGATAAGGAGAGGCACGATCGGGCTCATTCTTTGTGGTGGCG 1364
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1350 AGTGTCTGGGTTTTGCACAGAAAAGGAGAGGCACGATCGGGCTCATTCTTTGTGGTGGCG 1409
Query 1365 TGCCTCTGAACAGGGAAACGAACATGCTGCATTGCTTATTGGAGATGCATATTACTACGG 1424
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1410 TGCCTCTGAACAAGGAAACGAACATGCTGCATTGCTTATTGGAGATGCATACTACTACGG 1469
Query 1425 TCGGGGTACAGAGAGGGATTTCGTGCGTGCAGCAGAGGCGTACATGTATGCTAAATCTCA 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 TCGGGGTACAGAGAGGGATTTCGTGCGTGCAGCAGAGGCGTACATGTATGCTAAATCTCA 1529
Query 1485 ATCAAATGCGCAAGCAATGTTCAACCTCGGTTACATGCATGAGCATGGAGAAGGTCTTCC 1544
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1530 ATCAAATGCGCAAGCAATGTTCAACCTCGGTTATATGCATGAGCATGGAGAAGGTCTTCC 1589
Query 1545 TTTTGATCTCCATCTTGCTAAACGTTACTACGACCAGGCCCTCCAGAGCGATACTGCTGC 1604
||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1590 TTTCGATCTCCATCTTGCTAAACGTTACTACGATCAGGCCCTCCAGAGCGATGCTGCTGC 1649
Query 1605 CAAATTGCCCGTCACGCTTGCTCTTGCGAGTGTATGGGTCCGCAGAAACTATGCTGATAC 1664
||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1650 CAAATTGCCTGTCACACTAGCTCTTGCGAGTGTATGGGTTCGCAGAAACTATGCTGATAC 1709
Query 1665 TGCCCTGGTGCAAGTACTGAATTCCTTACCAGAAGTGCATCAAAAGGTGGTGGAATGGGT 1724
||||||||||||||||||| ||||||||||||||||| ||| |||||||| |||||||||
Sbjct 1710 TGCCCTGGTGCAAGTACTGGATTCCTTACCAGAAGTGTATCGAAAGGTGGAGGAATGGGT 1769
Query 1725 AGAGAATG-GGATGTTGGAAGAAGTGGTTTTGGATCCCGTTGGTGCTA-ACGTGGCACAG 1782
|||||||| || |||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1770 AGAGAATGTGG-TGTTGGAAGAAGTGGTTTTGGATCCCGTTGGTGC-AGACGTGGCACAG 1827
Query 1783 CCCCTCGCTGCCCCAGTAGCATTTCCCCAGTAA 1815
|||||||||| || ||||| ||||||||||||
Sbjct 1828 CCCCTCGCTGGACCTGTAGCCTTTCCCCAGTAA 1860
Score = 1205 bits (652), Expect = 0.0
Identities = 773/833 (93%), Gaps = 1/833 (0%)
Strand=Plus/Plus
Query 1 ATGAGAGTCTCAGGCCAGAGTATCATAGCCATATCTCTATTCACACTCTCACTCTACATC 60
|||||| ||||||| || |||||||||||||| ||| | |||| ||||||| |||||||
Sbjct 1 ATGAGAATCTCAGGTCACAGTATCATAGCCATCTCTTTCTTCATACTCTCATTCTACATT 60
Query 61 CATCGTGTTCAAGCCCGTCCCTTCGTTCTCGTTCTCTCCAACGAAGATCTCAACGGAGGT 120
|||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct 61 TATCGCGTTCAAGCCCGTCCCTTCGTTCTCGTTCTCTCCAACGACGATTTCAACGGCGGC 120
Query 121 TTTAATGATAACGGCGCCTACGAATCCTCCGATTTCGATGAGTTTGGTGAATCCGAACCC 180
||| |||||||||| ||| | |||||||| |||||||||| || || ||||||||||||
Sbjct 121 TTTGATGATAACGGTGCCGAAGAATCCTCTAATTTCGATGAATTCGGAGAATCCGAACCC 180
Query 181 AAATCCGAAGAGGAGCTTGATCCCGGTTCATGGCGTCGAATCTTCGAGACAAATGAGTCC 240
||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||| |||
Sbjct 181 AAATCCGAAGAGGAGCTTGATCCCGGTTCCTGGCGACCAATCTTCGAGCCAAATGATTCC 240
Query 241 ACCGTCCACGCCTCTGCGTCGCCGCAGTATTACTCCGGACTCCACAAAATTCTCTCGGCT 300
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 241 GCCGTCCACGCCTCTGCGTCGCCGCAGTACTACTCCGGACTCCACAAAATCCTCTCGGCG 300
Query 301 GCGAGTGAAGGAAACACTACATTGATGGAGGAAGCGGTTTCAGAGATAGATTCGTCTGCC 360
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCGATTGAAGGAAACACTACGTTGATGGAGGAAGCGGTTTCAGAGATAGATTCGTCTGCC 360
Query 361 TCGTCAGGAGATCCACACGCACAATCAGTGATGGGGTTCGTATACGGGATTGGGATGATG 420
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 TCTTCGGGAGATCCACACGCACAATCAGTGATGGGATTCGTATACGGGATTGGGATGATG 420
Query 421 CGTGAGACGAGCCGAAGCAAATCGATTTTGCATCATCATTTCGCGGCTGCGGGAGGAAAT 480
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 421 CGTGAGACGAGCCGAAGCAAATCGATTTTGCATCATCATTTCGCTGCTGAGGGAGGAAAT 480
Query 481 ATGCAGTCTAAAATGGCACTTGCTTTTAGATATCTAAGACAAAATATGTATGATAAAGCT 540
||||||| ||||||||||||||||| |||||||| |||||||||||| |||||||||||
Sbjct 481 GTGCAGTCCAAAATGGCACTTGCTTTCAGATATCTTAGACAAAATATGCATGATAAAGCT 540
Query 541 GTTGAGTTATATGCTGAACTAGCAGAGACAGCAGTGAATAGCTTTTTGATATCCAAGGAT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 GTTGAGTTATATGCTGAACTAGCAGAGACAGCAGTGAATAGCTTTTTGATATCTAAGGAT 600
Query 601 TCTCCAATGGCTGAGCCAGTTAGAATCCACATTGGAACAGAGGAGAATAAAGATGCACTA 660
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTCCAATGGTTGAGCCAGTTAGAATCCACATTGGAACAGAGGAGAATAAAGATGCACTT 660
Query 661 AGGAAGTCACGAGGGGAGGAAGATGAGGATTTTCAGATATTGGAATACCAGGCAGAGAAA 720
||||| || || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGGAAATCCCGTGGAGAGGAAGATGAGGATTTTCAGATATTGGAATACCAGGCAGAGAAA 720
Query 721 GGGAATTCTGTAGCAATGCACAAAATTGGACTGTTTTATTACTTTGGTTTGAGAGGATTA 780
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 GGGAATTCTGCGGCAATGCACAAAATTGGACTGTTTTATTACTTTGGTTTGAGAGGGTTA 780
Query 781 AGGCGTGATCACGCTAAGGCGTTGTATTGGTTTTCGAAGGCGG-AGTTTAATG 832
|||||||||||||| ||||||||||| |||||||||||||||| | || ||||
Sbjct 781 AGGCGTGATCACGCCAAGGCGTTGTACTGGTTTTCGAAGGCGGCACTTGAATG 833
> Ahg920751 jgi|Araly1|920751|scaffold_102032.1
Length=2079
Score = 1038 bits (562), Expect = 0.0
Identities = 810/930 (87%), Gaps = 16/930 (2%)
Strand=Plus/Plus
Query 826 TTTAATGGCCTTGGTTACTTGTATGTCAAAGGCTATGGAGTAGATAAGAGAAACTACACT 885
|||||||| |||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 972 TTTAATGGAATTGGCTACTTGTATGTCAAAGGCTATGGAGTAGATAAGAAAAATTACACT 1031
Query 886 AAGGCGAGAGAATACTTTGAGATGGCTGCTAATAATGAAGATCCTAGCGGGCATTATAAC 945
||||| |||||||| ||||||| ||||| | | |||||||| || || ||||||||||||
Sbjct 1032 AAGGCAAGAGAATATTTTGAGAAGGCTGTTGACAATGAAGACCCCAGTGGGCATTATAAC 1091
Query 946 CTTGGAGTGTTGTATCTTAAAGGCACT-GGAGTCAAGAA-GGATGTGAGGCATGCAACCA 1003
|||||||| |||||||||||||||| | |||||||| || |||||||||||| ||||| |
Sbjct 1092 CTTGGAGTTTTGTATCTTAAAGGCA-TCGGAGTCAA-AAGGGATGTGAGGCAGGCAACAA 1149
Query 1004 AATATTTCTTTGTTGCTGCCAATGCTGGTCAACCAAAGGCTTTTTATCAACTCGCCAAGA 1063
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1150 AATATTTCTTTGTTGCTGCAAATGCTGGTCAACCAAAGGCTTTCTATCAACTCGCCAAGA 1209
Query 1064 TGTTCCATACAGGCGTTGGACTTACAAAGAACTTGGAAATGGCGACAACTTTTTATAAGC 1123
|||||||||| || ||||| |||| ||||||| |||||||||| || | |||||||||
Sbjct 1210 TGTTCCATACTGGTGTTGGGCTTAAAAAGAACCTGGAAATGGCAACTTCATTTTATAAGT 1269
Query 1124 TAGTAGCAGAAAGAGGACCATGGAGTTCTCTCTCTAGATGGGCTCTTGAAGCTTACTTGA 1183
||||||||||||| || || |||||||||||||||||||||||||||||||||||||| |
Sbjct 1270 TAGTAGCAGAAAGGGGGCCGTGGAGTTCTCTCTCTAGATGGGCTCTTGAAGCTTACTTAA 1329
Query 1184 AAGGTGATGTGGGAAAGGCTTTTATATTGTATTCGAGAATGTCAGAGCTCGGTTATGAAG 1243
||||||||||||| |||||||| || ||||| || || ||| ||||| | ||||||||||
Sbjct 1330 AAGGTGATGTGGGTAAGGCTTTGATCTTGTACTCAAGGATGGCAGAGATGGGTTATGAAG 1389
Query 1244 TAGCACAAAGTAATGCTGCCTGGATCGTCGATAAATACGGGGAAAGAAGCATGTGCATGG 1303
||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1390 TAGCACAAAGTAACGCTGCCTGGATCCTTGATAAATACGGGGAAAGAAGCATGTGCATGG 1449
Query 1304 GAGTGTATGGGTTTTGCACAGATAAGGAGAGGCACGATCGGGCTCATTCTTTGTGGTGGC 1363
|||| | ||| ||||||||||| || ||||| || || ||||| ||||||||||||||||
Sbjct 1450 GAGTATCTGGATTTTGCACAGACAAAGAGAGACATGAGCGGGCACATTCTTTGTGGTGGC 1509
Query 1364 GTGCCTCTGAACAGGGAAACGAACATGCTGCAT-TGCTTATTGGAGATGCATATTACTAC 1422
| ||||||||||| || || ||||||||||| | |||| ||||||||||||||||||||
Sbjct 1510 GGGCCTCTGAACAAGGCAATGAACATGCTGC-TCTGCTCATTGGAGATGCATATTACTAT 1568
Query 1423 GGTCGGGGTACAGAGAGGGATTTCGTGCGTGCAGCAGAGGCGTACATGTATGCTAAATCT 1482
|| ||||| || ||||| ||||| || ||||| || || || |||||| ||||||||||
Sbjct 1569 GGCCGGGGAACCGAGAGAGATTTTGTACGTGCGGCTGAAGCATACATGCATGCTAAATCA 1628
Query 1483 CAATCAAATGCGCAAGCAATGTTCAACCTCGGTTACATGCATGAGCATGGAGAAGGTCTT 1542
|| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1629 CAGTCAAACGCGCAAGCAATGTTCAACCTCGGTTACATGCATGAGCATGGACAAGGACTT 1688
Query 1543 CCTTTTGATCTCCATCTT-GCTAAACGTTACTACGACCAGGCCCTCCAGAGCGATACTGC 1601
|| |||||||||||| || || ||||||||||| || || ||||| ||||||||| | ||
Sbjct 1689 CCCTTTGATCTCCAT-TTAGCAAAACGTTACTATGATCAAGCCCTTCAGAGCGATGCAGC 1747
Query 1602 TGCCAAATTGCCCGTCACGCTTGCTCTTGCGAG-TGTATGGGTCCGCAGAAACTATGCTG 1660
|||| |||||| ||||| |||||||| || || | ||||| |||| |||||||||||||
Sbjct 1748 CGCCAGATTGCCAGTCACACTTGCTCTCGCTAGCT-TATGGCTCCGAAGAAACTATGCTG 1806
Query 1661 ATACTGCCCTGGTGCA-AGTACTGAATTCCTTACCAGAAGTGCATCAAAAGGTGGTGGAA 1719
|||| | ||||||| | ||| || |||| |||||||||||| ||| |||||||| | |
Sbjct 1807 ATACCGTCCTGGTG-AGAGTTGTGGATTCATTACCAGAAGTGTATCCAAAGGTGGAG-AC 1864
Query 1720 TGGG-TAGAGAATG-GGATGTTGGAAGAAG 1747
| || ||||||||| || |||| |||||||
Sbjct 1865 TTGGATAGAGAATGTGG-TGTTTGAAGAAG 1893
Score = 544 bits (294), Expect = 1e-153
Identities = 615/767 (80%), Gaps = 33/767 (4%)
Strand=Plus/Plus
Query 67 GTTCAAGCCCGTCCC-TTCGTTCTCGTTCTCTCCAACGAAGATCTCAACGGAGGTTTTAA 125
||||| || |||||| || |||||||| ||||| || || |||||||| | || |
Sbjct 87 GTTCACGCTCGTCCCGTT-GTTCTCGTCCTCTCAAATGACGATCTCAATAGCGGCGGCGA 145
Query 126 TGATAACGGCG-CCTACGAATCCTCCGATTTCGATGAGTTTGGTGAATCCGAACCCAAAT 184
||||||||| | | | || ||||| || |||||||||||||| ||||||||||| || |
Sbjct 146 TGATAACGGAGTCGGA-GAGTCCTCTGACTTCGATGAGTTTGGGGAATCCGAACCTAAGT 204
Query 185 CCGAAGAGGAGCTTGATCCCGGTTCATGGCG-TCGAATCTTCGAGACAAATGAGTCCACC 243
||||||||||||||||||||||||||||||| |||| |||||||| || |||| |||||
Sbjct 205 CCGAAGAGGAGCTTGATCCCGGTTCATGGCGATCGA-TCTTCGAGCCAGATGACTCCACT 263
Query 244 GTCCACGCCTCTGCGTCGCCGCAGTATTACTCCGGACTCCACAAA--ATTCTCTCGGCTG 301
||||| ||| ||||||||||||||||||||||| ||| | ||| ||||| || || |
Sbjct 264 GTCCAAGCC---GCGTCGCCGCAGTATTACTCCGGCCTC-A-AAAGGATTCTATCAGCAG 318
Query 302 CGAGTGAAGGAAACACTACA--TTGATGGAGGAAGCGGTTTCA-GAGATAGATTC-GTCT 357
||||||| ||||| | || || ||||||||||| || | |||||||| | | ||
Sbjct 319 CGAGTGAGGGAAATT-T-CAGGTTAATGGAGGAAGCAGTGG-ATGAGATAGAGGCTG-CT 374
Query 358 GCCTCGTCAGGAGATCCACACGCACAATC-AGTGATGGGGTTCGTATACGGGATTGGGAT 416
| ||| | ||||||||||||||||| || | | ||||||||||| ||||||||||| ||
Sbjct 375 TCTTCGGCTGGAGATCCACACGCACAGTCGA-TAATGGGGTTCGTTTACGGGATTGGAAT 433
Query 417 GATGCGTGAGACGAGCCGAAGCAAATCGATT-TTGCATCATCATTTCGCGGCTGCGGGAG 475
|||||| |||| |||| |||||||||| || || || ||| ||||||| ||||| || |
Sbjct 434 GATGCGAGAGAAGAGCAAAAGCAAATCGTTTCTT-CACCATAATTTCGCAGCTGCTGGTG 492
Query 476 GAAATATGCAGTCTAAAATGGCACTTGCTTTTA-GATATCTAAGACAAAATATGTATGAT 534
| ||||||||||| || ||||||||||| || | | ||| | | ||| ||||| |||||
Sbjct 493 GGAATATGCAGTCGAAGATGGCACTTGCGTTCACG-TATTTGCGTCAAGATATGCATGAT 551
Query 535 AAAGCTGTTG-AGTTATATGCTGAACTAGCAGAGACAGCAGTGAATAGCTTTT-TGATAT 592
|||||||| | | |||||||||||| |||| ||||| || || ||||| |||| |||| |
Sbjct 552 AAAGCTGT-GCAATTATATGCTGAATTAGCTGAGACGGCTGTCAATAG-TTTTCTGATCT 609
Query 593 CCAAGGATTCTCCAATGGCTGAGCCAGTTAGAATCCACATTGGAACAGAGGAGAATAAAG 652
| ||||||||||| ||| ||| ||| |||||| || | ||||| || || || ||||
Sbjct 610 CAAAGGATTCTCCGGTGGTTGAACCAACTAGAATTCATAGCGGAACTGAAGAAAACAAAG 669
Query 653 ATGCACTAAGGAAGTCACGAGGGGAGGAAGATGAGGATTTTCAGATATTGGAATACCAGG 712
||| |||||||| || || || ||||| ||||| ||||| |||||||||||||| ||||
Sbjct 670 GTGCTCTAAGGAAATCCCGTGGCGAGGAGGATGAAGATTTCCAGATATTGGAATATCAGG 729
Query 713 CAGAGAAAGGGAATTCTG-TAGCAATGCACAAAATTGGACTGTTTTATTACTTTGGTTTG 771
|| ||||||||||| || | || ||| |||||||||| ||||| || |||||||| ||
Sbjct 730 CACAGAAAGGGAATGCTAAT-GCCATGTACAAAATTGGCCTGTTCTACTACTTTGGCCTG 788
Query 772 AGAGGATTAAGGCGTGATCACGCTAAGGCGTTGTATTGGTTTTCGAA 818
|||||||||||||||||||| | ||||| ||| | ||||||| |||
Sbjct 789 CGAGGATTAAGGCGTGATCACACCAAGGCATTGCACTGGTTTTTGAA 835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68143448305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5