BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73580.1
Length=507
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316299 jgi|Araly1|316299|fgenesh1_pm.C_scaffold_2001332 798 0.0
> Ahg316299 jgi|Araly1|316299|fgenesh1_pm.C_scaffold_2001332
Length=507
Score = 798 bits (432), Expect = 0.0
Identities = 483/508 (95%), Gaps = 2/508 (0%)
Strand=Plus/Plus
Query 1 ATGTCGCT-TATGGATAATCTGTTAGGTATCCTCCGCGTTCGTGTCCAACGCGGTGTCAA 59
||||| || | ||||||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct 1 ATGTCCCTGT-TGGATAATCTGTTAGGTATCCTCCGCGTTCGCGTCAAACGTGGTGTCAA 59
Query 60 CCTCGCCGTACGTGATGTTTCCAGCAGCGATCCTTACGTCGTCCTCAAGCTAGGTCGTCA 119
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 60 CCTCGCCGTACGTGATGTTTCTAGCAGCGATCCTTACGTCGTCCTCAAGCTAGGTCGCCA 119
Query 120 GAAACTCAAAACCAAAGTGGTGAAGCAAAACGTAAACCCACAATGGCAAGAAGATTTGTC 179
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 120 GAAACTCAAAACCAAAGTGGTGAAGAAAAACGTAAACCCACAATGGGAAGAAGATTTGTC 179
Query 180 ATTCACAGTAACCGACCCTAATCTCCCGCTTACTCTGATTGTGTACGATCACGACTTCTT 239
||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATTCACAGTCTCTGACCCGAATCTCCCGCTTACTCTGATTGTGTACGATCACGACTTCTT 239
Query 240 CAGCAAAGACGACAAAATGGGAGACGCAGAGATCGATTTGAAACCGTACATCGAAGCCTT 299
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 CAGCAAAGATGACAAAATGGGAGACGCAGAGATCGATTTGAAACCGTACATTGAAGCCTT 299
Query 300 ACGAATGGAACTCTCCGGTTTACCAGACGGAACCATCATATCGACCATCGGTCCAAGCCG 359
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 300 GCGAATGGAGCTCTCCGGTTTACCAGACGGAACCATCATATCGACGATCGGTCCGAGCCG 359
Query 360 TGGCAACTGCTTAGCCGAGGAAAGCTACATCCGTTGGATCAACGATCGAATCGTTCAGCA 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 CGGCAACTGCTTAGCCGAAGAAAGCTACATCCGTTGGATCAACGATCGAATCGTTCAGAA 419
Query 420 CATTTGTCTCCGACTCCGTAACGTCGAGCGTGGTGAAGTTGAGATTGAACTCCAATGGAT 479
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 420 CATTTGTCTCCGACTCCGTAACGTCGAGCGTGGTGAAGTCGAGATTGAGCTCCAATGGAT 479
Query 480 TGATCTTCCCGGTTCTAAAGGCTTGTAA 507
||||||||||||||||||||||||||||
Sbjct 480 TGATCTTCCCGGTTCTAAAGGCTTGTAA 507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18429149487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5