BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73590.1
Length=2270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476492 jgi|Araly1|476492|fgenesh2_kg.2__1622__AT1G73590.1 3517 0.0
Ahg472559 jgi|Araly1|472559|fgenesh2_kg.1__2513__AT1G23080.1 359 6e-98
Ahg484057 jgi|Araly1|484057|fgenesh2_kg.5__49__AT2G01420.1 259 6e-68
> Ahg476492 jgi|Araly1|476492|fgenesh2_kg.2__1622__AT1G73590.1
Length=2252
Score = 3517 bits (1904), Expect = 0.0
Identities = 2148/2264 (95%), Gaps = 23/2264 (1%)
Strand=Plus/Plus
Query 1 AACACTCACTTTACTCTTTTTTCCctcttcaccacttctct--ctcaaactaaagacaaa 58
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1 AACACTCACTTTACTCTTTTTTCCCTCTTCACCACTTCTCTCCCCCAAACTAAAGACAAA 60
Query 59 agctcttctctc-t-tccctctctcttctcCGGCGAACAAAAGATGATTACGGCGGCGGA 116
| |||||||||| | || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 AACTCTTCTCTCATCTCTCTCTCTCTTCTCCGGCGAACAAAAGATGATAACGGCGGCGGA 120
Query 117 CTTCTACCACGTTATGACGGCTATGGTTCCGTTATACGTAGCTATGATCCTCGCTTACGG 176
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 TTTCTACCACGTCATGACGGCTATGGTTCCGTTATACGTAGCCATGATCCTCGCTTACGG 180
Query 177 CTCTGTCAAATGGTGGAAAATCTTCACACCAGACCAATGCTCCGGCATAAACCGTTTCGT 236
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCCGTCAAATGGTGGAAGATCTTCACACCAGACCAATGCTCCGGCATAAACCGTTTCGT 240
Query 237 CGCTCTCTTCGCCGTTCCTCTCCTCTCTTTCCACTTCATCGCCGCTAACAACCCTTACGC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGCTCTCTTCGCCGTTCCTCTCCTCTCTTTCCACTTCATCGCCGCTAACAACCCTTACGC 300
Query 297 CATGAACCTCCGTTTCCTCGCCGCAGATTCTCTCCAGAAAGTCATTGTCCTCTCTCTCCT 356
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 301 CATGAACCTCCGTTTCCTCGCCGCAGATTCTCTCCAGAAAATCATTGTCCTCTCTCTACT 360
Query 357 CTTCCTCTGGTGCAAACTCAGCCGCAACGGTTCTTTAGATTGGACCATAActctcttctc 416
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 361 CTTCCTCTGGTGCAAACTCAGCCGCAACGGCTCGTTAGATTGGACCATAACTCTCTTCTC 420
Query 417 tctctcGACACTCCCCAACACTCTAGTCATGGGGATACCTCTTCTCAAAGGCATGTATGG 476
||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 421 TCTCTCGACTCTTCCCAACACTCTAGTCATGGGGATTCCTCTACTCAAAGGCATGTACGG 480
Query 477 TAATTTCTCCGGCGACCTCATGGTTCAAATCGTTGTTCTTCAGTGTATCATTTGGTACAC 536
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 481 TGATTTCTCCGGCGACCTCATGGTTCAAATCGTTGTTCTTCAATGTATCATTTGGTACAC 540
Query 537 ACTCATGCTCTTTCTCTTTGAGTACCGTGGAGCTAAGCTTTTGATCTCCGAGCAGTTTCC 596
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 541 ACTCATGCTCTTTCTCTTTGAGTACCGTGGCGCGAAGCTTTTGATCTCCGAGCAGTTTCC 600
Query 597 AGACACAGCAGGATCTATTGTTTCGATTCATGTTGATTCCGACATTATGTCTTTAGATGG 656
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGACACAGCTGGATCTATTGTTTCGATTCATGTTGATTCCGACATTATGTCTTTAGATGG 660
Query 657 AAGACAACCTTTGGAAACTGAAGCTGAGATTAAAGAAGATGGGAAGCTTCATGTTACTGT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGACAACCTTTGGAAACTGAAGCTGAGATTAAAGAAGATGGGAAGCTTCATGTTACTGT 720
Query 717 TCGTCGTTCTAATGCTTCAAGGTCTGATATTTACTCGAGAAGGTCTCAAGGCTTATCTGC 776
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCGTCGTTCTAATGCTTCGAGGTCTGATATTTACTCGAGAAGGTCTCAAGGCTTATCTGC 780
Query 777 GACACCTAGACCTTCGAATCTAACCAACGCTGAGATATATTCGCTTCAGAGTTCAAGAAA 836
||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 781 GACTCCAAGACCTTCGAATCTAACAAACGCTGAGATTTATTCGCTTCAGAGTTCAAGAAA 840
Query 837 CCCAACGCCACGTGGCTCTAGTTTTAATCATACTGATTTTTACTCGATGATGGCTTCTGG 896
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 841 CCCAACGCCTCGTGGCTCTAGCTTTAATCATACTGATTTTTACTCTATGATGGCTTCCGG 900
Query 897 TGGTGGTCGGAACTCTAACTTTGGTCCTGGAGAAGCTGTGTTTGGTTCTAAAGGTCCTAC 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TGGTGGTCGGAACTCTAACTTTGGTCCTGGAGAAGCTGTGTTTGGTTCTAAAGGTCCTAC 960
Query 957 TCCGAGACCTTCCAACTACGAAGAAGACGGTGGTCCTGCTAAACCGACGGCTGCTGGAAC 1016
||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 961 TCCGAGACCCTCTAACTATGAAGAAGACGGTGGTGCTGCTAAACCGACGGCTGCTGGAAC 1020
Query 1017 TGCTGCTGGAGCTGGGAGGTTTCATTATCAATCTGGAGGAAGTGGTGGCGGTGGAGGAGC 1076
||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1021 TGCCGCTGGAGCTGGGAGGTTTCATTATCAATCTGGAGGTAGCGGTGGTGGTGGAGGAGC 1080
Query 1077 GCATTATCCGGCGCCGAACCCAGGGATGTTTTCGCCCAACACTGGCGGTGGTGGAGGCAC 1136
|||||||||||||||||| |||||||||||||| || ||||| |||||||||||||| ||
Sbjct 1081 GCATTATCCGGCGCCGAATCCAGGGATGTTTTCACCTAACACCGGCGGTGGTGGAGGTAC 1140
Query 1137 GGCGGCGAAAGGAAACGCTCCGGTGGTTGGTGGGAAAAGACAAGACGGAAACGGAAGAGA 1196
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1141 GGCGGCGAAAGGGAACGCTCCGGTTGTTGGTGGGAAGAGACAAGACGGAAACGGAAGAGA 1200
Query 1197 TCTTCACATGTTTGTGTGGAGCTCAAGTGCTTCGCCGGTCTCAGATGTGTTCGGCGGTGG 1256
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1201 TCTTCATATGTTTGTGTGGAGCTCAAGTGCATCTCCGGTCTCAGATGTGTTCGGCGGTGG 1260
Query 1257 AGGAGGAAACCACCACGCCGATTACTCCACCGCTACGAACGATCATCAAAAGGACGTTAA 1316
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1261 AGGAGGAAACCACCACGCCGATTACGCCACCGGTACGAACGATCATCAAAAGGACGTTAA 1320
Query 1317 GATCTCTGTACCTCAGGGGAATAGTAACGACAACCAGTACGTGGAGAGGGAAGAGTTTAG 1376
||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 1321 AATCTCTGTACCTCAGGGGAATAGTAACGAGAACCAGTACGTTGAAAGGGAAGAGTTTAG 1380
Query 1377 TTTCGGTAACAAAGACGATGATAGCAAAGTATTGGCAACGGACGGTGGGAACAACATAAG 1436
||||||||| ||||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 1381 TTTCGGTAATAAAGACGATGATAGCAAGGTGTTGGCAGCGGACGGTGGGAACAACATAAG 1440
Query 1437 CAACAAAACGACGCAGGCTAAGGTGATGCCACCAACAAGTGTGATGACAAGACTCATTCT 1496
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CAACAAAACGCCGCAGGCAAAGGTGATGCCACCAACAAGTGTGATGACAAGACTCATTCT 1500
Query 1497 CATTATGGTTTGGAGGAAACTTATTCGTAATCCCAACTCTTACTCCAGTTTATTCGGCAT 1556
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1501 CATTATGGTTTGGAGGAAACTTATCCGTAATCCCAACTCTTACTCCAGTTTATTCGGCAT 1560
Query 1557 CACCTGGTCCCTCATTTCCTTCAAGTGGAACATTGAAATGCCAGCTCTTATAGCAAAGTC 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 CACCTGGTCCCTCATTTCCTTCAAGTGGAACATTGAAATGCCAGCTCTTATAGCAAAGTC 1620
Query 1617 TATCTCCATACTCTCAGATGCAGGTCTAGGCATGGCTATGTTCAGTCTTGGGTTGTTCAT 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TATCTCCATACTCTCAGATGCAGGTCTAGGCATGGCTATGTTCAGTCTTGGGTTGTTCAT 1680
Query 1677 GGCGTTAAACCCAAGAATAATAGCTTGTGGAAACAGAAGAGCAGCTTTTGCGGCGGCTAT 1736
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1681 GGCGTTAAACCCAAGAATAATAGCTTGTGGAAACAGAAGAGCAGCATTTGCGGCGGCTAT 1740
Query 1737 GAGATTTGTCGTTGGACCTGCCGTCATGCTCGTTGCTTCTTATGCCGTTGGCCTCCGTGG 1796
||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1741 GAGATTTATCGCCGGACCTGCCGTCATGCTCGTTGCTTCTTATGCTGTTGGCCTCCGTGG 1800
Query 1797 CGTCCTCCTCCATGTTGCCATTATCCAGGCAGCTTTGCCGCAAGGAATAGTACCGTTTGT 1856
||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1801 CGTCCTCCTCCGTGTCGCCATCATCCAGGCAGCTTTGCCGCAAGGAATAGTACCGTTTGT 1860
Query 1857 GTTTGCCAAAGAGTATAATGTGCATCCTGACATTCTTAGCACTGCGGTGATATTTGGGAT 1916
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 GTTCGCCAAAGAGTATAATGTGCATCCTGACATTCTTAGCACTGCGGTGATATTTGGGAT 1920
Query 1917 GTTGATCGCGTTGCCCATAACTCTTCTCTACTACATTCTCTTGGGTCTATGA--AG--AG 1972
||||||||||||||||||||||||||||||||||||||||||||| || ||| || ||
Sbjct 1921 GTTGATCGCGTTGCCCATAACTCTTCTCTACTACATTCTCTTGGGGCTGTGATGAGTGAG 1980
Query 1973 ATA-TTACCAAAACACAGGGAC-TTTGTTTTATTCTTTTGTGGGATGATGAATTGTGAAA 2030
||| |||||||||||||||||| ||| ||||| ||||||| ||||| ||||| |||||||
Sbjct 1981 ATAGTTACCAAAACACAGGGACGTTT-TTTTAATCTTTTGGGGGATTATGAAATGTGAAA 2039
Query 2031 AGAACAATGCCCTTTTTGTTGAAAACCCACAAATTAAATCAGAAGCAGCTTTAGAGAATC 2090
||||||||||||||||||||||||||||||||||||||||| || ||| ||| ||||
Sbjct 2040 AGAACAATGCCCTTTTTGTTGAAAACCCACAAATTAAATCAAAA-CAG----AGA-AATC 2093
Query 2091 TTTGAGGATAATTGAAGCTCTTGAAGAA-GAGAAGAAGAAGGAGACTTAAGTAGGAGCTC 2149
|| || || ||||||||||||||||||| | |||||||||| ||||||| | | ||||
Sbjct 2094 TTCGAAGACAATTGAAGCTCTTGAAGAATG-GAAGAAGAAGAAGACTTA-G--G-AGCTT 2148
Query 2150 AGCAAGTTTTACCTTTTTCTTAATTTTAATGAACATTCGTGTTTCCTCTTTTGGTAGGTT 2209
||||||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||
Sbjct 2149 GGCAAGTTTTACCTTTTTCTTAGTTTTTATGAACATTCGTGTTTCTTCTTTTGCTAGGTT 2208
Query 2210 TTAGGAATTTGTAAAAGCTTTGGCTACTTTTAGTGAATTAAAAA 2253
|||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 2209 TTAGGAATTTGTAAAAGCGTTGGCTACCTTTAGTGAATTAAAAA 2252
> Ahg472559 jgi|Araly1|472559|fgenesh2_kg.1__2513__AT1G23080.1
Length=2198
Score = 359 bits (194), Expect = 6e-98
Identities = 452/575 (79%), Gaps = 24/575 (4%)
Strand=Plus/Plus
Query 151 TACGTAGCTATGATCCTCGCTTACGGCTCTGTCAAATGGTGGAAAATCTTCACACCAGAC 210
|||||||| |||||||||||||||||||| ||| ||||||||||| ||| ||||||||
Sbjct 213 TACGTAGCCATGATCCTCGCTTACGGCTCCGTCCGGTGGTGGAAAATTTTCTCACCAGAC 272
Query 211 CAATGCTCCGGCATAAACCGTTTCGTCGCTC-TCTTCGCCGTTCCTCTCCTCTCTTTCCA 269
|||||||||||||||||||| |||||||| | | ||||| || |||||||||||||||||
Sbjct 273 CAATGCTCCGGCATAAACCGCTTCGTCGC-CATTTTCGCTGTCCCTCTCCTCTCTTTCCA 331
Query 270 CTTCATCGCCGCTAACAACCCTTACGCCATGAACCTCCGTTTCCTCGCCGCAGATTCTCT 329
||||||| || | |||||||| ||||| ||||| ||||| ||| ||||||| ||| | ||
Sbjct 332 CTTCATCTCCTCCAACAACCCATACGCAATGAATCTCCGATTCATCGCCGCCGATACACT 391
Query 330 CCAGAAAGTCATTGTCCTCTCTCTCCTCTTCCTCTGGTGCAAACT-CAGC-CGCAACGGT 387
||| ||| | || | ||| ||||||| || ||||| || |||| || | ||| ||||
Sbjct 392 CCAAAAACTAATCATGCTCACTCTCCTAATCATCTGG-GCTAACTTCA-CTCGCTCCGGT 449
Query 388 TCTTTAGATTGGACCATAActctcttctctctctcGACACTCCCCAACACTCTAGTCATG 447
| | || |||| ||| || |||||||||| || ||||| ||||||||||| || |||
Sbjct 450 AGTCTCGAATGGAGCATCACAATCTTCTCTCTTTCAACACTTCCCAACACTCTCGTTATG 509
Query 448 GGGATACCTCTTCTCAAAGGC-ATGTATGGT-AATTTCTCCGGCG-ACCTCATGGTTCAA 504
|| |||||||| || | || ||||| || ||| | |||||| || ||||||||||
Sbjct 510 GGAATACCTCT-CTTGATCGCCATGTACGGCGAATAT-TCCGGCTCAC-TCATGGTTCAG 566
Query 505 ATCGTTGTTCTTCAGTGTATCATTTGGTACACACT-CATGCTCTTTCTCTTT-GAGTACC 562
|||||||||||||||||||| || |||||||| || | | |||||||| ||| || |||
Sbjct 567 ATCGTTGTTCTTCAGTGTATAATATGGTACACGCTTCTT-CTCTTTCT-TTTCGAATACA 624
Query 563 GTGGAGCTAAGCTTTTGATC-TCCGAGCAGTTTCCAGACACAGCAGGATCTATTGTTTCG 621
| ||||||||| | |||||| | || ||||| ||||| || | | || ||||| ||
Sbjct 625 GAGGAGCTAAGATCTTGATCATG-GAACAGTTCCCAGAGACTGGTGCTTCGATTGTATC- 682
Query 622 ATTCAT-GTTGATTCCGACATTATGTCTTTAGATGGA-A-GACAACCTTTGGAAACTGAA 678
||||| ||||| ||||| || | |||||||| ||| | || ||| | |||||||
Sbjct 683 ATTCAAAGTTGAGTCCGATGTTGTTTCTTTAGACGGACATGATTTTCTT-G-AAACTGAT 740
Query 679 GCTGAGATTAAAGAAGATGGGAAGCTTCATGTTAC 713
||| | || || ||||| ||||||||||||||
Sbjct 741 GCTCAAATCGGTGACGATGGTAAGCTTCATGTTAC 775
> Ahg484057 jgi|Araly1|484057|fgenesh2_kg.5__49__AT2G01420.1
Length=2208
Score = 259 bits (140), Expect = 6e-68
Identities = 429/564 (76%), Gaps = 38/564 (7%)
Strand=Plus/Plus
Query 95 AAAAGATGATTACGGCGGC-GGACTTCTACCA-CGTTATGACGGCTATGGTTCC-GTTAT 151
|||| |||||||| | ||| ||||| || || ||| | || || |||| || || |
Sbjct 56 AAAAAATGATTAC-GTGGCACGACTTGTA-CACCGTCCTCACCGCCGTGGTGCCACTT-T 112
Query 152 ACGTAGCTATGATCCTCGCTTACGGCTCTGT-CAAATGGTGGAAAATCTTCACACCAGAC 210
|||| || ||||| || || ||||| || || | | |||||||| || ||| | || |||
Sbjct 113 ACGTCGCCATGATTCTTGCCTACGGATCCGTGC-AGTGGTGGAAGATATTCTCCCCTGAC 171
Query 211 CAATGCTCCGGCATAAACCGTTTCGTCGCTC-TCTTCGCCGTTCCTCTCCTCTCTTTCCA 269
|| ||||||||||| || || |||||||| | | |||||||| ||||||||||| |||||
Sbjct 172 CAGTGCTCCGGCATCAATCGCTTCGTCGC-CATTTTCGCCGTCCCTCTCCTCTCCTTCCA 230
Query 270 CTTCATCGCCGCTAACAACCCTTACGCCATGAACCTCCGTTTCCTCGCCGCAGATTCTCT 329
||||||| || | ||| | ||||||||||||||| |||| ||| ||||||| || | ||
Sbjct 231 CTTCATCTCCACCAACGATCCTTACGCCATGAACTTCCGCTTCGTCGCCGCCGACACGCT 290
Query 330 CCAGAAAG-TCATTGTCCTC-TCTCT-CCTCTTCCTCTGGTGC-AAACTCAGCC--GCAA 383
|| |||| |||| | ||| ||| | | | | || ||| || || || | || | ||
Sbjct 291 TCA-AAAGATCATCATGCTCGTCT-TGCTTGGT-CTATGG-GCTAATCT-AACCAAG-AA 344
Query 384 CGGT-TCTTTAGATTGGACCATAActc-tcttctctctctcGACACTC-CCC-AACACTC 439
|||| | || || |||| || || | ||||||||||| | ||||| ||| |||||||
Sbjct 345 CGGTAGC-TTGGAGTGGATGATCAC-CATCTTCTCTCTC-AG-CACTCTCCCAAACACTC 400
Query 440 TAGTCATGGGGATACCTCTT-CTCAAAGGCATGTATGGTAATTTCTCCGGCGAC-CTCAT 497
| |||||||| || ||| || | | | |||||| || | || | | ||| | |||||
Sbjct 401 TTGTCATGGGAATCCCT-TTGTTGATCGCCATGTACGGGACTTACGCTGGC-TCTCTCAT 458
Query 498 GGTTCAAATCGTTGTTCTTCAGTGTATCATTTGGTACACACTCATGCTCTTTCTCTTTGA 557
||||||| ||||||||||||||||||||||||||||||| ||| | ||||||||||| ||
Sbjct 459 GGTTCAAGTCGTTGTTCTTCAGTGTATCATTTGGTACACTCTCCTTCTCTTTCTCTTCGA 518
Query 558 GTACCGTGGAGCTAAGCTTTTGATCTCCG-AGCAGTTTCCAGACACAGCAG-GATCTATT 615
||||||||| |||||||||||||| | | ||||||| || || || | | | || |||
Sbjct 519 GTACCGTGGCGCTAAGCTTTTGAT-TATGGAGCAGTTCCCGGAGACTGGTGCG-TCCATT 576
Query 616 GTTTCGATTCATGTTGATTCCGAC 639
|| || || | ||||| ||||||
Sbjct 577 GTCTCCTTTAAAGTTGAATCCGAC 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85474509780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5