BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G73603.1

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926732 jgi|Araly1|926732|scaffold_202293.1                        416    5e-116


> Ahg926732 jgi|Araly1|926732|scaffold_202293.1
Length=312

 Score =  416 bits (225),  Expect = 5e-116
 Identities = 286/314 (91%), Gaps = 10/314 (3%)
 Strand=Plus/Plus

Query  53   aaagaaaaaaagaaaaaaaaaTGGCCAAGGCAACTTCTTCACTTGTCGTCCCCATCATCT  112
            |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AAAGAAAACAAGAAACAAAAATGGCCAAGGCAACTTCTTCACTTGTCGTCCCCATCATCT  60

Query  113  TTCTTGTGATATTTGCTTTAGTTGAGCAGAATATGGGATGTAATGATTAT-A--TTGTTG  169
            |||||||||||||||| ||||||||||||||||||||||||||||||||| |  ||| ||
Sbjct  61   TTCTTGTGATATTTGCGTTAGTTGAGCAGAATATGGGATGTAATGATTATGATGTTGGTG  120

Query  170  GCGATGTGTGCGTTCATTGTCGAG-AAAGATGCCTCAGATATTATCCAGTTACAAGAAAA  228
            || ||| |||||  |||||||| |  ||||||||||| ||||||||||  ||||||||| 
Sbjct  121  GCAATGGGTGCGACCATTGTCG-GCTAAGATGCCTCAAATATTATCCACCTACAAGAAAG  179

Query  229  GCCGAGTGTTACAG--GAATCATTGTCTTTGCATCGGCCCTTGTCCGGATGATAGGCCTC  286
            ||||| || | |||   ||||||||| |||||||||||||||||||||||||||||||||
Sbjct  180  GCCGAATG-T-CAGCTTAATCATTGTATTTGCATCGGCCCTTGTCCGGATGATAGGCCTC  237

Query  287  ATAAGCGATTCCAAATGTTAAACTCTTCCAAAAATGTAAAAGCACAAATCCTAAGTTGAA  346
            |||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||
Sbjct  238  ATAAGCGATTCCAAATGTTAAACTCTTC-AAAAATGTATAAGCAAAAATCCTAAGTTGAA  296

Query  347  TGTCAAAATCATAA  360
            ||||||||||||||
Sbjct  297  TGTCAAAATCATAA  310



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13850478807


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5