BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G73610.1 Length=1035 Score E Sequences producing significant alignments: (Bits) Value Ahg476497 jgi|Araly1|476497|fgenesh2_kg.2__1627__AT1G73610.1 1587 0.0 > Ahg476497 jgi|Araly1|476497|fgenesh2_kg.2__1627__AT1G73610.1 Length=1038 Score = 1587 bits (859), Expect = 0.0 Identities = 985/1044 (94%), Gaps = 15/1044 (1%) Strand=Plus/Plus Query 1 ATGAATTGCCTCATGTTCTTCAAAATGCTATTAGCATTCTCTTTCATTAGTCTATTTTAT 60 ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 1 ATGAATTGCCTTATGTTCTCCAAAATGCTATTAGCATTCTCTTTGGTTAGTCTATTTTAT 60 Query 61 GTTGGTAATGCACAACAATCATATGGCAATTCAACGGTTTCGGCACTTTTCGCTTTTGGA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 GTTGGTAATGCACAACAATCATATGGCAATTCAACGGTTTCGGCACTTTTCGCGTTTGGA 120 Query 121 GACTCAATACTTGACACAGGCAACAATAATCTTCTTTTAAGTGTTT-CTAAAGTCAATTT 179 |||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| Sbjct 121 GACTCAATACTTGACACAGGCAACAATAATCTTCTTCCAAGT-TTTAGTAAAGTCAATTT 179 Query 180 TTATCCATACGGTAGAGACTTTATAGGTGGAAG-AGCTACTGGGAGATTTGGAAATGGGA 238 |||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||| Sbjct 180 TTATCCATACGGTAGAGACTTTATAGGTGG-AGTAGCTACCGGGAGATTTGGAAATGGGA 238 Query 239 GAGTTTTTTCTGATATAATTGCTGAGGGTTTGGGATTGAAGAATCTCTTACCAGCATATC 298 |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||| Sbjct 239 GAGTTTTTTCTGATATGATTGCTGAAGGTTTGGGATTGAAGAATATCTTACCAGCATATC 298 Query 299 GTGATCCATACCTCT-GGAACAATGATCTAACGACTGGTGTTTGTTTCGCATCTGGTGGA 357 ||||||||||||||| | |||||||||||||||||||||||||||| ||||| |||||| Sbjct 299 GTGATCCATACCTCTCTG-ACAATGATCTAACGACTGGTGTTTGTTTTGCATCCGGTGGA 357 Query 358 TCTGGACTTGATCCAATCACTGCAAGAACAACAGGAAGTATATGGGTGTCAGACCAGGTC 417 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 TCTGGACTTGATGCAATCACTGCAAGAACAACAGGAAGTATATGGGTGTCAGACCAGGTC 417 Query 418 ACAGACTTCCAAAACTACATCACCAGACTAAATGGTGTAGTAGGAAATCAAGAACAAGCA 477 ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 418 ACAGACTTCCAAAACTACATCGCCAGACTAAATGGTGTAGTAGGGAATCAAGAACAAGCA 477 Query 478 AATGCAGTTATATCAAATGCTGTTTACCTAATCTCCGCAGGAAATAATGATATTGCTATC 537 |||||| ||||||||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct 478 AATGCAATTATATCAAATGCGGTTTACCTAATCTCCGCCGGAAATAACGATATTGCTATC 537 Query 538 ACTTATTTTACTACGGGGGCTAGAAGATTACAATACACTCTTCCAGCCTACAATGATCAA 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 ACTTATTTTACTACGGGGGCTAGAAGATTACAATACACTCTTCCAGCCTACAATGATCAA 597 Query 598 TTGGTCTCTTGGACTCGTGATCTCATAAAGAGTTTATATGATATGGGTGCAAGAAAATTT 657 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 598 TTGGTCTCTTGGACTCGTGATCTCATAAAGAGTTTATATGATCTGGGTGCAAGAAAATTT 657 Query 658 GCCGTTATGGGAACATTACCGCTAGGTTGTTTACCAGGAGCAAGAGCCTTA-AC-GAG-A 714 || |||||||||||||||||||||||||||||||||||||||||||||||| | ||| | Sbjct 658 GCGGTTATGGGAACATTACCGCTAGGTTGTTTACCAGGAGCAAGAGCCTTAGATAGAGTA 717 Query 715 GCATGTGAATTATT-TGTAAATCAAGGAGCTGCTATGTTCAACCAACAATTATCTGCCGA 773 ||||||||| | || | |||||||| ||||||||||||||||||||||||||||||||| Sbjct 718 GCATGTGAACTCTTCTC-AAATCAAGCAGCTGCTATGTTCAACCAACAATTATCTGCCGA 776 Query 774 CATTGACAATCTTGGTGCAACATTTCCGGGTGCCAAATTCGTGTACGTAGATATGTACAA 833 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 CATTGACAATCTTGGTGCAACATTTCCGGGTGCCAAATTCGTGTACGTAGATATGTACAA 836 Query 834 TCCTCTTT-TGGGTCTCATCATTAACCCTCAAGCTTCAGGGTTCATTGATGTAGCTGATG 892 |||||||| ||| |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 837 TCCTCTTTATGG-TCTCATCAGTAACCCTCAAGCTTCAGGGTTCATTGATGCAGCTGATG 895 Query 893 CGTGTTGTTGTACGCCAACG-CACTTAATACCGTGCTTGGATGCGTCTCGTTACGTGTTT 951 | |||||||||||||||||| | | || |||||||| |||||||||||||| |||||| Sbjct 896 CTTGTTGTTGTACGCCAACGGC-CATAGTACCGTGCCCGGATGCGTCTCGTTTTGTGTTT 954 Query 952 TGGGATGTAGCCCATCCGACCCAGAAGTCATACGAAACCATCGCTCCACAGATTATTGAA 1011 |||||||| ||||||||||||||| |||||||| |||| ||||| |||| |||||||||| Sbjct 955 TGGGATGTCGCCCATCCGACCCAGCAGTCATACCAAACTATCGCACCACCGATTATTGAA 1014 Query 1012 AATATCAAAGCAAAGCTCGCATGA 1035 |||||||||||||||||||||||| Sbjct 1015 AATATCAAAGCAAAGCTCGCATGA 1038 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38504146170 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5