BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73610.1
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476497 jgi|Araly1|476497|fgenesh2_kg.2__1627__AT1G73610.1 1587 0.0
> Ahg476497 jgi|Araly1|476497|fgenesh2_kg.2__1627__AT1G73610.1
Length=1038
Score = 1587 bits (859), Expect = 0.0
Identities = 985/1044 (94%), Gaps = 15/1044 (1%)
Strand=Plus/Plus
Query 1 ATGAATTGCCTCATGTTCTTCAAAATGCTATTAGCATTCTCTTTCATTAGTCTATTTTAT 60
||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGAATTGCCTTATGTTCTCCAAAATGCTATTAGCATTCTCTTTGGTTAGTCTATTTTAT 60
Query 61 GTTGGTAATGCACAACAATCATATGGCAATTCAACGGTTTCGGCACTTTTCGCTTTTGGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GTTGGTAATGCACAACAATCATATGGCAATTCAACGGTTTCGGCACTTTTCGCGTTTGGA 120
Query 121 GACTCAATACTTGACACAGGCAACAATAATCTTCTTTTAAGTGTTT-CTAAAGTCAATTT 179
|||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 121 GACTCAATACTTGACACAGGCAACAATAATCTTCTTCCAAGT-TTTAGTAAAGTCAATTT 179
Query 180 TTATCCATACGGTAGAGACTTTATAGGTGGAAG-AGCTACTGGGAGATTTGGAAATGGGA 238
|||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 180 TTATCCATACGGTAGAGACTTTATAGGTGG-AGTAGCTACCGGGAGATTTGGAAATGGGA 238
Query 239 GAGTTTTTTCTGATATAATTGCTGAGGGTTTGGGATTGAAGAATCTCTTACCAGCATATC 298
|||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||
Sbjct 239 GAGTTTTTTCTGATATGATTGCTGAAGGTTTGGGATTGAAGAATATCTTACCAGCATATC 298
Query 299 GTGATCCATACCTCT-GGAACAATGATCTAACGACTGGTGTTTGTTTCGCATCTGGTGGA 357
||||||||||||||| | |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 299 GTGATCCATACCTCTCTG-ACAATGATCTAACGACTGGTGTTTGTTTTGCATCCGGTGGA 357
Query 358 TCTGGACTTGATCCAATCACTGCAAGAACAACAGGAAGTATATGGGTGTCAGACCAGGTC 417
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCTGGACTTGATGCAATCACTGCAAGAACAACAGGAAGTATATGGGTGTCAGACCAGGTC 417
Query 418 ACAGACTTCCAAAACTACATCACCAGACTAAATGGTGTAGTAGGAAATCAAGAACAAGCA 477
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 418 ACAGACTTCCAAAACTACATCGCCAGACTAAATGGTGTAGTAGGGAATCAAGAACAAGCA 477
Query 478 AATGCAGTTATATCAAATGCTGTTTACCTAATCTCCGCAGGAAATAATGATATTGCTATC 537
|||||| ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 478 AATGCAATTATATCAAATGCGGTTTACCTAATCTCCGCCGGAAATAACGATATTGCTATC 537
Query 538 ACTTATTTTACTACGGGGGCTAGAAGATTACAATACACTCTTCCAGCCTACAATGATCAA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ACTTATTTTACTACGGGGGCTAGAAGATTACAATACACTCTTCCAGCCTACAATGATCAA 597
Query 598 TTGGTCTCTTGGACTCGTGATCTCATAAAGAGTTTATATGATATGGGTGCAAGAAAATTT 657
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 598 TTGGTCTCTTGGACTCGTGATCTCATAAAGAGTTTATATGATCTGGGTGCAAGAAAATTT 657
Query 658 GCCGTTATGGGAACATTACCGCTAGGTTGTTTACCAGGAGCAAGAGCCTTA-AC-GAG-A 714
|| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 658 GCGGTTATGGGAACATTACCGCTAGGTTGTTTACCAGGAGCAAGAGCCTTAGATAGAGTA 717
Query 715 GCATGTGAATTATT-TGTAAATCAAGGAGCTGCTATGTTCAACCAACAATTATCTGCCGA 773
||||||||| | || | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 GCATGTGAACTCTTCTC-AAATCAAGCAGCTGCTATGTTCAACCAACAATTATCTGCCGA 776
Query 774 CATTGACAATCTTGGTGCAACATTTCCGGGTGCCAAATTCGTGTACGTAGATATGTACAA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CATTGACAATCTTGGTGCAACATTTCCGGGTGCCAAATTCGTGTACGTAGATATGTACAA 836
Query 834 TCCTCTTT-TGGGTCTCATCATTAACCCTCAAGCTTCAGGGTTCATTGATGTAGCTGATG 892
|||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 837 TCCTCTTTATGG-TCTCATCAGTAACCCTCAAGCTTCAGGGTTCATTGATGCAGCTGATG 895
Query 893 CGTGTTGTTGTACGCCAACG-CACTTAATACCGTGCTTGGATGCGTCTCGTTACGTGTTT 951
| |||||||||||||||||| | | || |||||||| |||||||||||||| ||||||
Sbjct 896 CTTGTTGTTGTACGCCAACGGC-CATAGTACCGTGCCCGGATGCGTCTCGTTTTGTGTTT 954
Query 952 TGGGATGTAGCCCATCCGACCCAGAAGTCATACGAAACCATCGCTCCACAGATTATTGAA 1011
|||||||| ||||||||||||||| |||||||| |||| ||||| |||| ||||||||||
Sbjct 955 TGGGATGTCGCCCATCCGACCCAGCAGTCATACCAAACTATCGCACCACCGATTATTGAA 1014
Query 1012 AATATCAAAGCAAAGCTCGCATGA 1035
||||||||||||||||||||||||
Sbjct 1015 AATATCAAAGCAAAGCTCGCATGA 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5