BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73620.1
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476498 jgi|Araly1|476498|fgenesh2_kg.2__1628__AT1G73620.1 1280 0.0
> Ahg476498 jgi|Araly1|476498|fgenesh2_kg.2__1628__AT1G73620.1
Length=959
Score = 1280 bits (693), Expect = 0.0
Identities = 786/830 (95%), Gaps = 9/830 (1%)
Strand=Plus/Plus
Query 1 ATAAAGAGAAAATCTCCAAAAGCAATGACCAATGAGAA-ATG-TGAAGTTGCTCTTCCAC 58
|||||||||||||||||||||||||| | |||| ||| || | | | |||| |||
Sbjct 1 ATAAAGAGAAAATCTCCAAAAGCAATAAGAAATGTGAAGCTGCTTCA-CAG-TCTTACAC 58
Query 59 TAAAGTTGAAATCAG-A-AA-AACCATCAATGGcttcttc-atcatctctctttctcctc 114
| ||||||||||||| | || ||||||||||||||||||| || ||||||||||||||||
Sbjct 59 TCAAGTTGAAATCAGAAGAAGAACCATCAATGGCTTCTTCAAT-ATCTCTCTTTCTCCTC 117
Query 115 cctctccttcttcttgtctccCAAGCTTCAGCTTCAACGGTTATATTTTACAACAAGTGC 174
||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 118 CCTCTCCTTCTTCTTCTCTCCCACGCTTCAGCTTCAACGGTAATATTCTACAACAAGTGC 177
Query 175 ACGTACACTGTCTGGCCTGGGATCCAACCTAGCTCCGGTCAGTCATTACTCGCCGGCGGC 234
|||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct 178 ACGTACACTGTCTGGCCTGGGATCCAGCCTAGCTCCGGCCAGTCAGTACTCGCCGGCGGC 237
Query 235 GGATTTAAACTGTCGCCGAACAGAGCTTACACTCTCCAACTTCCACCGCTCTGGTCCGGT 294
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 238 GGATTTAAACTGTCGCCGAACAGAGCTTACACTCTTCAACTTCCACCGCTCTGGTCCGGT 297
Query 295 CGCTTCTGGGGCCGCCACGGTTGCTCCTTTGACAGATCTGGCCGTGGTCGCTGCGCCACC 354
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 298 CGCTTCTGGGGACGCCACGGTTGCTCCTTCGACAGATCTGGCCGTGGTCGCTGCGCTACC 357
Query 355 GGAGACTGTGGTGGTTCTTTCCTCTGTAACGGAGCTGGCGGTGTACCTCCGGCTACTCTT 414
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGAGACTGTGGCGGTTCTTTCCTCTGTAACGGAGCTGGCGGTGTACCTCCGGCTACTCTT 417
Query 415 GCCGAGATCACCCTCGGTCATGACATGGACTTTTATGACGTCAGCCTCGTTGATGGATAT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GCCGAGATCACCCTCGGTCATGACATGGACTTTTATGACGTCAGCCTCGTTGATGGATAT 477
Query 475 AACTTGGCGATGTCGATAATGCCGGTGAAGGGTACGGGAAAGTGTACCTACGCTGGTTGC 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AACTTGGCGATGTCGATAATGCCGGTGAAGGGTACGGGAAAGTGTACCTACGCTGGTTGC 537
Query 535 GTAAGCGACCTGAACCGGATGTGCCCGGTTGGTCTACAAGTCCGTTCACGTGACGGGACA 594
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 538 GTAAGCGACCTGAACCGGATGTGCCCGGTTGGTCTACAAGTCCTTTCACGTGACGGGAAA 597
Query 595 CAGGTAGTAGCCTGTAAAAGCGCATGCTCTGCGTTTAACTCACCACGCTATTGCTGTACC 654
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 598 CAGGTAGTAGCCTGTAAAAGCGCATGCTCTGCCTTTAACTCACCACGCTATTGTTGTACC 657
Query 655 GGCTTGTTCGGTAACCCACAGTCATGCAAGCCAACGGCTTACTCTAAGATCTTCAAGGTA 714
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 658 GGCTTGTTCGGTAACCCACAGTCATGCAAGCCTACGGCTTACTCTAAGATCTTCAAGGTA 717
Query 715 GCTTGCCCTAAGGCTTACTCATACGCCTACGATGACCCAACTAGCATTGCGACATGTTCT 774
||||||||||||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct 718 GCTTGCCCTAAGGCTTACTCATACGCCTATGACGACCCAACTAGCATTGCTACGTGTTCT 777
Query 775 AAAGCTAATTATGTCGTCACTTTTTGCCCTCACCGCGGCCGTTGATTAAA 824
|||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 778 AAAGCTAACTACGTCGTCACTTTTTGCCCCCACCGCGGCCGTTGATTAAA 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36979229490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5