BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73640.1
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476500 jgi|Araly1|476500|fgenesh2_kg.2__1630__AT1G73640.1 1308 0.0
Ahg478935 jgi|Araly1|478935|fgenesh2_kg.3__1636__AT3G15060.1 115 5e-25
> Ahg476500 jgi|Araly1|476500|fgenesh2_kg.2__1630__AT1G73640.1
Length=850
Score = 1308 bits (708), Expect = 0.0
Identities = 807/855 (94%), Gaps = 6/855 (1%)
Strand=Plus/Plus
Query 2 AAACAAAAGAGGAACTTGAGAATTT-TATGCTTGAGACAAAATGGCAGAAGATACGTACG 60
|||||||||| ||||||||| |||| ||| ||||||||||||||||||||||| ||||||
Sbjct 1 AAACAAAAGAAGAACTTGAG-ATTTCTATTCTTGAGACAAAATGGCAGAAGATTCGTACG 59
Query 61 AGGAAGAGTGCGACTACTTGTTTAAGGCGGTGTTGATCGGAGACTCAGCCGTCGGAAAAT 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 60 AGGAAGAGTGCGACTACTTGTTCAAGGCGGTGTTGATCGGAGACTCAGCCGTCGGGAAAT 119
Query 121 CAAACCTCTTGTCTAGATTTTCTAAAGACGAGTTCCGGTTTGACTCTAAACCAACCATCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAAACCTCTTGTCTAGATTTTCTAAAGACGAGTTCCGGTTTGACTCTAAACCAACCATCG 179
Query 181 GAGTAGAGTTTGCTTACCGGAATGTTCACGTCGGAGATAAAATCATCAAGGCTCAGATTT 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAGTTGAGTTTGCTTACCGGAATGTTCACGTCGGAGATAAAATCATCAAGGCTCAGATTT 239
Query 241 GGGACACCGCCGGCCAAGAAAGATTTCGAGCAATCACAAGTTCGTACTACCGTGGAGCAT 300
|||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 240 GGGACACCGCCGGCCAAGAAAGATTTAGGGCAATTACAAGTTCGTACTACCGTGGAGCAT 299
Query 301 TAGGGGCATTACTGATTTACGACATCACTAGACGAACAACTTTCGACAACATCAAGAAAT 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 TAGGGGCATTACTGATTTACGACATCACAAGACGAACAACTTTCGACAACATCAAGAAAT 359
Query 361 GGCTTTTCGAGCTTAGAGACTTCGCCAATCCCGAAACCGTCGTTGTCCTCGTCGGAAACA 420
||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 360 GGCTTTTTGAGCTTAGGGACTTTGCCAATCCCGAAACCGTGGTTGTCCTCGTCGGCAACA 419
Query 421 AATCTGATCTCCGACAATCTAGAGAAGTTGAAGAAGACGAGGGTAAGACTCTAGCAGAAT 480
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 420 AATCCGATCTGCGACAATCTAGAGAAGTCGAAGAAGACGAGGGTAAGACTCTAGCTGAAT 479
Query 481 CAGAAGGTCTCTACTTCCTCGAGACTTCGGCTTTAGAGAATGTTAACGTCGAAGAAGCGT 540
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 480 CAGAAGGTCTCTTCTTCCTCGAGACTTCGGCTTTAGAGAACGTTAACGTCGAAGAAGCAT 539
Query 541 TTCTAGTGATGATCGGACGGATACATGAGGTTGTTACTCAGAGGATAGCTTCGGAAAACA 600
||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 540 TTCTAGTGATGATCGGACGGATACACGAGGTTGTGACTCAGAGGATAGCTTCGGACAACA 599
Query 601 AATCCAACGGTGCTGCGACGCCTCACATTAACGGTAATGGGAACGGTACGGTCCTTCCGG 660
|||||||||| ||| ||||| |||||||||| |||||||| ||||||||||||||||| |
Sbjct 600 AATCCAACGGAGCTACGACGGCTCACATTAATGGTAATGGTAACGGTACGGTCCTTCCCG 659
Query 661 TTGGTAAAGAAATTGTGAATATACACGAAGTCACTGCTACTCAACCCTTATTAAGCTCAT 720
|||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| |
Sbjct 660 TTGGTAAAGAAATTGTGAATATACACGAAGTCACTGCTACTCAACCGTTA--A-GCTCTT 716
Query 721 CTTCCAACTGTTGTTTCAAGTAAATAATTAATGTAtttttttCGTTTATTGTTTTGGAAT 780
| ||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct 717 CCTCCAACTGTTGTTTCAAGTAAATAACTAATGTATTTTTT-CGTCTATTGTTTTGGAAC 775
Query 781 ACTTTGATGATGTTTTTATTTGCCTGTGTATTCGTGAAAATTTTGCCTAGGTTGAGTACA 840
||||||||||||||||||||||| ||| ||||||||||||||||| || |||||||||||
Sbjct 776 ACTTTGATGATGTTTTTATTTGCATGTTTATTCGTGAAAATTTTGACTTGGTTGAGTACA 835
Query 841 TGAATTTAAATCATA 855
||||||| |||||||
Sbjct 836 TGAATTTTAATCATA 850
> Ahg478935 jgi|Araly1|478935|fgenesh2_kg.3__1636__AT3G15060.1
Length=862
Score = 115 bits (62), Expect = 5e-25
Identities = 170/221 (77%), Gaps = 12/221 (5%)
Strand=Plus/Plus
Query 84 AAGGCGGTGTTGATCGGAGACTCAGCCGTCGGAAAATCAAACCT-CTTGTCTAGATTTTC 142
|||| ||| || ||||| || || | |||||| ||||| || || ||| ||| |||| |
Sbjct 123 AAGGTGGTATTAATCGGTGATTCCGGCGTCGGTAAATCCAATCTGCTT-TCTCGATTCAC 181
Query 143 -TAAAGACGAGTTCCGGTTTGACTCTAAA-CCAACCATCGGAGTAGAGTTTGCTTACCGG 200
| |||||||| | | || |||||| || |||||||| || || || || ||| |
Sbjct 182 GCGCA-ACGAGTTCAGCCTCGAGTCTAAATCC-ACCATCGGCGTCGAATTCGC-CACCCG 238
Query 201 AATG--TTCACGTCGGA-GATAAAATCATCAAGGCTCAGATTTGGGACACCGCCGGCCAA 257
|| | |||| ||| || || |||||| |||||||||||||||||||||||||||| |||
Sbjct 239 AA-GCATTCATGTC-GATGAAAAAATCGTCAAGGCTCAGATTTGGGACACCGCCGGTCAA 296
Query 258 GAAAGATTTCGAGCAATCACAAGTTCGTACTACCGTGGAGC 298
|| |||| |||||||||||||| | ||||| || |||||
Sbjct 297 GAGAGATACCGAGCAATCACAAGCGCTTACTATCGAGGAGC 337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32709462786
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5