BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73650.3
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316308 jgi|Araly1|316308|fgenesh1_pm.C_scaffold_2001341 1083 0.0
> Ahg316308 jgi|Araly1|316308|fgenesh1_pm.C_scaffold_2001341
Length=1359
Score = 1083 bits (586), Expect = 0.0
Identities = 627/647 (97%), Gaps = 2/647 (0%)
Strand=Plus/Plus
Query 194 GTGATTTACCAGTTCATATTCTTCGTAATCACGGCTCTTTTCAAATTTGATCAAGTCACT 253
||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 673 GTGGTTTACCAATTCATATTCTTCGTAATCACAGCTCTTTTCAAATTTGATCAAGTTACT 732
Query 254 GACTTTGCTGGTAGCACAAACTTCGTTATACTTGCTGTGTTAACACTTGTTCTCAAAGCC 313
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 733 GACTTTGCTGGTAGCACAAACTTCGTTATACTTGCTGTGTTAACACTTGTTCTTAAAGCC 792
Query 314 TCTTGGCATTTTCGACAGATAGTATTGACTTTGCTAGTTGTGGTATGGGGTCTTCGCTTG 373
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 793 TCTTGGCATTTTCGGCAGATAGTCTTGACTTTGCTAGTTGTGGTATGGGGTCTTCGCTTG 852
Query 374 GGGATTTTCCTTCTAATGAGGATCTTGCAATGGGGGGAAGATCGTCGCTTTGATGAACAG 433
||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 853 GGGATATTCCTCCTAATGAGGATCTTGCAATGGGGCGAAGATCGACGCTTTGATGAACAG 912
Query 434 CGTGGAAATATAGTGAGACTAATCATTTTCTGGACTCTTCAGGCTGTGTGGGTTTGGACG 493
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 913 CGTGGGAATATAGTGAGACTAATCATTTTCTGGACTCTTCAGGCCGTGTGGGTTTGGACG 972
Query 494 GTTAGCTTACCTTTAACAC-TTGTTAATGCAAGTGATGGTGGTGGATCTCTTAAACCCGC 552
||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 973 GTTAGCTTACCTTTAAC-CGTTGTTAATGCAAGTGATGGTGGAGGATCTCTTAAACCCGC 1031
Query 553 AGATGTTATCGGTTGGACTATGTGGGTTTTCGGTTTCTTGATTGAAGCTGCAGCTGATCA 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 AGATGTTATCGGTTGGACTATGTGGGTTTTCGGTTTCTTGATTGAAGCTGCAGCTGATCA 1091
Query 613 ACAGAAGCTATCATTCAAAAACTCTCCTGAAAACAGAGGAAAATGGTGTGATGTTGGAGT 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 ACAGAAGCTATCATTCAAAAACTCTCCTGAAAACAGAGGAAAATGGTGTGATGTTGGAGT 1151
Query 673 CTGGAAGTATTCAAGACATCCAAACTACTTCGGTGAGATGTTACTGTGGTGGGGAATCTT 732
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1152 GTGGAAGTATTCAAGACATCCAAACTACTTCGGTGAGATGTTACTGTGGTGGGGGATCTT 1211
Query 733 TGTGGCTGCATCGCCTGTGCTTGAAGGTGCAGAGTATCTTGTCATATTCGGACCACTCTT 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 TGTGGCTGCATCGCCTGTGCTTGAAGGTGCAGAGTATCTTGTCATATTCGGACCACTCTT 1271
Query 793 TCTCACTTTGCTACTTCTATTCGTCAGCGGCATACCATTACTCGAGG 839
|||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1272 TCTCACTTTGCTACTTCTGTTCGTCAGTGGCATACCATTACTCGAGG 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50017267104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5