BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73680.2
Length=2051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926743 jgi|Araly1|926743|scaffold_202304.1 2543 0.0
> Ahg926743 jgi|Araly1|926743|scaffold_202304.1
Length=2010
Score = 2543 bits (1377), Expect = 0.0
Identities = 1478/1528 (97%), Gaps = 2/1528 (0%)
Strand=Plus/Plus
Query 503 TGTAGTGGCGACAAAGTTGTTAGCGAGAAAAAGATTCATAGACAATGGGGACCAATTCAA 562
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 468 TGTAGTGGCGACAAAGTTGTTAGCTAGAAAAAGATTCATAGACAATGGGGACCAATTCAA 527
Query 563 CGTGATAGCTTGTTCTTGGATCCAGTTCATGATCCATGATTGGGTTGATCACTTAGAAGA 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 CGTGATAGCTTGTTCTTGGATCCAGTTCATGATCCATGATTGGGTTGATCACTTAGAAGA 587
Query 623 CACCCACCAGATTGAGCTTGAAGCTCCAGAAGAAGTAGCAAGTGGATGTCCATTGAAGTC 682
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 588 CACCCACCAGATTGAGCTTGAAGCTCCAGAAGAAGTAGCAAATGGATGTCCATTGAAGTC 647
Query 683 ATTCAAGTTCCTCAGAACGAAGAAAGTTCCCACCGATGATCACCACAAATCTGGCGCTGT 742
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 648 ATTCAAGTTCCTCAGAACGAAGAAAGTTCCCACCGGTGATCACCACAAATCTGGCGCTGT 707
Query 743 CAACACTAGAACCCCTTGGTGGGATGGGAGTGTAATATATGGAAATGACGAGACTGGAAT 802
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 708 CAACACTAGAACCCCTTGGTGGGATGGGAGTGTAATATATGGAAATGACGAGGCCGGAAT 767
Query 803 GAGAAGAGTTAGGGTTTTCAAGGACGGAAAGCTAAAAATCTCTGGGGATGGCTTGTTGGA 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GAGAAGAGTTAGGGTTTTCAAGGACGGAAAGCTAAAAATCTCTGGGGATGGCTTGTTGGA 827
Query 863 GAGGGACGAAAGAGGTGTTCCGATCTCCGGTGACATAAGAAACAGCTGGTCAGGTTTCTC 922
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 828 GAGGGACGAAAGAGGTGTTACTATCTCCGGTGACATAAGAAACAGCTGGTCAGGTTTCTC 887
Query 923 TCTGTTGCAAGCTCTCTTTGTCAAAGAACACAACTCCGTCTGTGATATGCTCAAAGAACG 982
||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 888 TCTGTTGCAAGCTCTCTTTGTGAAAGAACATAACTCTGTCTGTGATATGCTCAAAGAACG 947
Query 983 GTATCCAGATTTTGATGATGAGAAACTCTACCGGACTGCTAGACTTGTGACAGCAGCGGT 1042
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 948 GTATCCAGATTTTGATGATGAGAAACTCTACCGGACTGCTAGACTGGTGACTGCAGCGGT 1007
Query 1043 TATCGCTAAGGTTCATACGATCGATTGGACAATAGAACTCTT-AAAGACAGACACACTCA 1101
|||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1008 TATCGCTAAGGTTCATACAATCGATTGGACAATAGAACTCTTGAAA-ACAGACACACTCA 1066
Query 1102 CTGCTGGAATGAGGATCAACTGGTATGGGTTTTTTGGGAAGAAAGTGAAGGACATGGTTG 1161
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1067 CTGCTGGAATGAGGATCAACTGGTATGGGTTTTTAGGGAAGAAAGTGAAGGACATGGTCG 1126
Query 1162 GAGCAAGATTTGGTCCTCTATTTAGCGGATTAGTTGGTCTGAAGAAACCGAATGATCATG 1221
||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1127 GAGCAAGATTTGGTCCTATATTTAGCGGCTTAGTTGGTCTGAAGAAACCGAAAGATCATG 1186
Query 1222 GAGTTCCTTATTCCCTTACCGAAGAGTTCGTTAGTGTTTACAGGATGCATTGTCTTCTAC 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 GAGTTCCTTATTCCCTTACCGAAGAGTTCGTTAGTGTTTACAGGATGCATTGTCTTCTAC 1246
Query 1282 CAGAGACACTTATACTCCGAGATATGAACTCTGAGAATGTAGACAAAGAAAACCCTGCAA 1341
||||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||||
Sbjct 1247 CAGAGACACTTATCCTCCGAGATATGAAATCTGAGAATGTTGACAAAGCAAACCCTGCAA 1306
Query 1342 TAGAACGAGAGATACCGATGACGGAACTGATCGGGAAAAAAGCAGGAGAAAAGGCTTCGA 1401
|||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||
Sbjct 1307 TAGAACGAGAGATACCGATGACAGAACTGATCGGGAAAGAAGCAGGACTAAAGGGTTCGA 1366
Query 1402 AACTTGGGTTTGAGCAGTTACTTGTTTCAATGGGACACCAATCTTGTGGCGCATTGACAT 1461
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1367 AAATTGGGTTTGAGCAGTTACTTGTTTCAATGGGACACCAATCTTGTGGGGCATTGACAT 1426
Query 1462 TGTGGAACTACCCTAATTGGATGAGGAACCTTGTGGCTCAAGATATCGACGGAGAAGATA 1521
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 TGTGGAATTACCCTAATTGGATGAGGAACCTTGTGGCTCAAGATATCGACGGAGAAGATA 1486
Query 1522 GACCTCACCTTATAGACATGGCTGCCTTGGAGATTTATAGAGACCGGGAGAGAGGAGTTC 1581
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1487 GACCTCACCTTATAGATATGGCTGCCTTGGAGATTTATAGAGATCGGGAGAGAGGAGTTC 1546
Query 1582 CTCGGTACAACGAATTCAGAAAGAATCTGTTGATGAGTCCGATCAGCAAATGGGAAGAGT 1641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 CTCGGTACAACGAATTCAGAAAGAATCTGTTGATGAGTCCGATCAGCAAATGGGAAGAGT 1606
Query 1642 TGACAGATGATGAAGAAGCTATCAAGGTTTTAAGAGAAGTGTACGAAGACGATATAGAGA 1701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 TGACAGATGATGAAGAAGCTATCAAGGTTTTAAGAGAAGTGTACGAAGACGATATAGAGA 1666
Query 1702 AGCTTGATCTAAACGTGGGGTTGCACGCAGAGAAAAAGATCAAAGGATTCGCCATTAGCG 1761
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1667 AGCTTGATCTAAACGTGGGATTGCACGCAGAGAAGAAGATCAAAGGATTCGCCATTAGCG 1726
Query 1762 AAACTGCTTTCTTCATCTTCCTCCTTGTCGCCTCCAGGAGGCTAGAAGCAGATAGGTTTT 1821
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1727 AAACTGCTTTCTTCATCTTTCTCCTCGTCGCCTCCAGGAGGCTAGAAGCAGATAGGTTTT 1786
Query 1822 TCACTACGAACTTCAATGAGAAGACTTATACTAAGGAAGGGTTAGAGTGGGTCAATACTA 1881
|||| ||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||
Sbjct 1787 TCACGACGAACTTCAACGAGAAGACGTATACTAAAGAAGGATTAGAGTGGGTCAATACTA 1846
Query 1882 CAGAGACTTTAAAAGATGTGATAGACCGACACTTCCCGAGGTTAACCGATCAATGGATGC 1941
||||||||||||||||||| |||||| |||||||||| || |||||||||||||||||||
Sbjct 1847 CAGAGACTTTAAAAGATGTAATAGACAGACACTTCCCAAGCTTAACCGATCAATGGATGC 1906
Query 1942 GATGTTCGAGCGCCTTCTCTGTCTGGGGCTCGGATCCTAACCCAAAGAATTGGGTTCCTT 2001
||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1907 GATGTTCTAGCGCCTTCTCTGTCTGGGGCTCGGATCCTAACCCAAACACTTGGGTTCCTT 1966
Query 2002 TGTACCTCCGATCCGCTCCATAGGCCAT 2029
||||||||||||||||||||||||||||
Sbjct 1967 TGTACCTCCGATCCGCTCCATAGGCCAT 1994
Score = 750 bits (406), Expect = 0.0
Identities = 437/452 (97%), Gaps = 1/452 (0%)
Strand=Plus/Plus
Query 10 CATTACAATTGTGTGACTATCATTTAAAGAATAAAGCAAACACATGATCCAAAGAAGATA 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CATTACAATTGTGTGACTATCATTTAAAGAATAAAGCAAACACATGATCCAAAGAAGATA 60
Query 70 GATAGGGAGACaaaaaaaaa-TCAAGGCAAAAAATGGGTTTCTCTCCATCCTCTTCATGG 128
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GATAGGGAGACAAAAAAAAAATCAAGGCAAAAAATGGGTTTCTCTCCATCTTCTTCATGG 120
Query 129 TTTCTTCATCCTCAGCTTCATCATGTTGTTTCCAAGATGTCTTACTTTGATGCTTTTTTG 188
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 TTTCTTCATCCTCAGCTTCATCATGTTGTTTCCGAGATGTCTTACTTTGATGCTTTTTTA 180
Query 189 TTCTATATTGTGCACTTAGTGGACAAGCTAGGATTGTGGCATAGATTTCCAGTGTTATTA 248
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 TTCTATATTGTGCACTTAGTGGACAAGCTAGGATTGTGGCATAGGCTTCCAGTGTTATTA 240
Query 249 GGAGTGGCTTACTTGGGGTTACGAAGACATCTACATCAACGTTACAATCTGGTACATGTC 308
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GGAGTGGCTTACTTGGGGTTACGAAGACATCTACATCAACGTTACAATCTTGTACATGTC 300
Query 309 GGTCCGATCAACGGTCAGGGTTACGACACCGATGAGTTCTGTTATCGTACGGCTGACGGC 368
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 301 GGTCCGATCAACGGTCAGGATTACGACAACGATGAGTTCTGTTATCGTACGGCTGACGGC 360
Query 369 AAGTGTAACCATCCCTCCGATAACACCATCGGCAGCCAAGGCAGCTTCATCGGCCGGAAT 428
|||||||| ||||||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct 361 AAGTGTAATCATCCCTCCGACGACTCCATCGGCAGTCAAGGCAGCTTCATCGGCCGGAAT 420
Query 429 ATGCCTCCCTCTACTTCTCAGTACGGCttttt 460
||||||||||||||||||||||||||| ||||
Sbjct 421 ATGCCTCCCTCTACTTCTCAGTACGGCATTTT 452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77132746125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5