BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73690.1
Length=1625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476509 jgi|Araly1|476509|fgenesh2_kg.2__1639__AT1G73690.1 2254 0.0
Ahg472021 jgi|Araly1|472021|fgenesh2_kg.1__1975__AT1G18040.1 1068 0.0
Ahg943049 jgi|Araly1|943049|scaffold_603593.1 183 3e-45
> Ahg476509 jgi|Araly1|476509|fgenesh2_kg.2__1639__AT1G73690.1
Length=1584
Score = 2254 bits (1220), Expect = 0.0
Identities = 1501/1629 (92%), Gaps = 49/1629 (3%)
Strand=Plus/Plus
Query 1 GTTTACTTTTCAATATTTTCCCCTAAAAATGTCGATTCCTTCTGTAATTGCTCTAACGGC 60
|||||||||||||||||||| ||| |||||||||||| |||||| ||||||||||||||
Sbjct 1 GTTTACTTTTCAATATTTTCTCCT-CAAATGTCGATTCTTTCTGTGATTGCTCTAACGGC 59
Query 61 TAC-TTTTTCTCCAGAGCATCATAAGATACCTCAACGTTAACGATAACAAATTAATTAAG 119
||| |||||| |||||| ||||||| |||||||||||||||||||| | |||| |
Sbjct 60 TACTTTTTTCGCCAGAG---CATAAGAAACCTCAACGTTAACGATAAC--A--AATT--G 110
Query 120 ATCAGTTTCGATCAATTGCTTGTGATCCGATTAGAGAGTTCCGGAGATGGAACAGCCGAA 179
| || | | || | | || | |||| || ||||||||||||| ||||| ||
Sbjct 111 --C---TT-G-T-AA-T-C---TG----G-TTAGTGAATTCCGGAGATGGATCAGCCAAA 152
Query 180 GAAAGTTGCTGATAGGTATCTAAAGCGAGAGGTTCTTGGTCAAGGTACTTATGGAGTCGT 239
|||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 153 AAAAGTTGCCGATAGGTATCTGAAGCGTGAGGTTCTTGGTCAAGGTACTTACGGAGTCGT 212
Query 240 CTTCAAAGCTACTGATACAAAGAATGGAGAAACTGTAGCGATCAAGAAAATAAGACTTGG 299
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 213 CTTCAAGGCTACTGATACTAAGAATGGAGAAACTGTAGCGATTAAGAAAATAAGACTTGG 272
Query 300 TAAAGAGAAAGAAGGTGTGAATGTAACAGCTCTTAGAGAAATCAAATTACTTAAAGAGCT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TAAAGAGAAAGAAGGTGTGAATGTAACAGCTCTTAGAGAAATCAAATTACTTAAAGAGCT 332
Query 360 TAAGCATCCACATATAATTGAGTTGATTGATGCGTTTCCTCACAAGGAGAATTTGCACAT 419
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 333 TAAGCATCCACATATAATTGAGTTGATTGATGCATTCCCTCACAAGGAGAACTTGCACAT 392
Query 420 CGTGTTTGAGTTCATGGAGACTGATCTCGAAGCAGTTATCCGAGATCGTAATCTCTATCT 479
||||||||||||||||||||||||||||| || ||||| || |||| |||||| | |||
Sbjct 393 TGTGTTTGAGTTCATGGAGACTGATCTCGAGGCTGTTATTCGCGATCCTAATCTGTTTCT 452
Query 480 TTCGCCTGGTGATGTCAAATCTTACCTCCAAATGATATTGAAAGGTCTTGAATATTGCCA 539
|||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 453 TTCGCCCGCTGATGTCAAATCTTACCTCCAAATGATATTGAAAGGTCTTGAGTATTGCCA 512
Query 540 TGGCAAATGGGTTCTGCACAGAGATATGAAGCCAAACAACTTGTTGATAGGACCCAATGG 599
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 TGACAAATGGGTTTTGCACAGAGATATGAAGCCAAACAACTTGTTGATAGGACCCAATGG 572
Query 600 ACAGCTGAAACTTGCAGATTTTGGGTTAGCACGTATATTTGGTAGCCCAGGTCGTAAGTT 659
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 573 ACAACTGAAACTTGCAGATTTTGGGTTAGCTCGTATATTTGGTAGCCCAGGTCGTAAGTT 632
Query 660 TACCCACCAGGTGTTTGCTAGATGGTATAGAGCACCTGAACTTTTGTTTGGTGCAAAACA 719
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 TACCCACCAGGTCTTTGCTAGATGGTATAGAGCACCTGAACTTTTGTTTGGTGCAAAACA 692
Query 720 ATATGATGGTGCAGTTGATGTTTGGGCTGCTGGCTGCATTTTTGCTGAACTTCTATTACG 779
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 ATATGGTGGTGCAGTTGATGTTTGGGCTGCTGGCTGCATTTTTGCTGAACTTCTATTACG 752
Query 780 CAGACCATTTCTTCAGGGAAACAGTGATATTGATCAATTAAGCAAAATCTTTGCTGCCTT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 CAGACCATTTCTTCAGGGAAACAGTGATATTGATCAATTAAGCAAAATCTTTGCTGCCTT 812
Query 840 TGGGACTCCAAAAGCAGATCAGTGGCCTGACATGATCTGCCTTCCTGATTATGTAGAGTA 899
|||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 813 TGGGACCCCAAAAGCAGATCAGTGGCCCGATATGATCTGCCTTCCTGATTATGTAGAGTA 872
Query 900 TCAATTTGTCCCTGCTCCTTCTTTACGTTCTTTACTCCCAACGGTTAGTGAGGATGCTTT 959
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 873 TCAATTTGTCCCTGCGCCTTCTTTACGTTCTTTACTCCCAACGGTTAGTGAGGATGCATT 932
Query 960 AGATTTGTTGTCAAAGATGTTCACCTATGACCCCAAGTCTAGAATATCGATTCAGCAGGC 1019
||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||
Sbjct 933 AGATTTGTTGTCAAAGATGTTTACCTATGATCCCAAGTCTAGAATAACGATTCAGCAGGC 992
Query 1020 TCTAAAACACAGGTACTTCACATCTGCACCTTCACCTACTGACCCTTTAAAGCTCCCAAG 1079
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 993 TCTACAACACAGGTACTTCACATCTGCACCTTCGCCTACTGACCCTTTAAAGCTCCCAAG 1052
Query 1080 ACCAGTTTC-CAAGCAAGATGCTAAGTCATCTGATAGTAAACTTGAAGCCATTAAAGTGC 1138
||||||| | |||||| || |||||||||||||| ||||||| ||||| |||||||||
Sbjct 1053 ACCAGTT-CGCAAGCAGGACGCTAAGTCATCTGACAGTAAACACGAAGCTATTAAAGTGT 1111
Query 1139 TGTCACCAGCACATAAGTTTAGAAGAGTGATGCCTGACCGAGGAAAGTCTGGTAATGGTT 1198
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1112 TGTCACCAGCACATAAGCTTAGAAGAGTGATGCCTGACCGAGGAAAGTCTGCTAATGGTT 1171
Query 1199 TCAAGGACCAGAGTGTTGATGTCATGAGACAAGCTAGCCATGATGGACAAGCACCAATGT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1172 TCAAGGACCAGAGTGTTGATGTCATGAGACAAGCTAGCCATGATGGACAAGCACCGATGT 1231
Query 1259 CTTTAGATTTCACCATCTTAGCTGAGCGGCCACCAAACCGACCAACCATCACCAGTGCAG 1318
||||||||||||||||| |||| |||||||| || ||||||||||||||||||||||| |
Sbjct 1232 CTTTAGATTTCACCATCCTAGCCGAGCGGCCTCCTAACCGACCAACCATCACCAGTGCGG 1291
Query 1319 ATAGATCTCATCTGAAGAGGAAACTTGATCTCGAGTTCCTATAGGATATCGCGTAACAGG 1378
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 1292 ATAGATCTCATCTGAAGAGGAAACTCGATCTCGAGTTCCTATAGGATATAGCTTAACAGG 1351
Query 1379 CTTCTTCTTGACGTCGTTCTTCAGGTTCCTATAGCCTATAGGATCTCTCTTACTGGTTGG 1438
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1352 CTTCTTCTTGACGTCGTTCTTCAG-TTCCTATAGCCTATAGGATCTCTCTTACTGGTTGG 1410
Query 1439 TTCCGTTCAGTAATTCCTGAAATTTTTCATATCACAACTAGTGATGACGAATAGTTTGAA 1498
|||| | | |||| || | ||||| |||||||||||||||||||||| ||||
Sbjct 1411 TTCC-TG-A--AATT--TG---T----CATATTACAACTAGTGATGACGAATAGTGTGAA 1457
Query 1499 TCATTCTTTCTGTCTAAAATAAAGAATATAAAGCACAGATGATTAACTAATCATCATGTA 1558
||||||||||||| | |||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 1458 TCATTCTTTCTGTTTTCAATAAA-A-TATAAAGTACAGATGATTAACTAATCATCATGTA 1515
Query 1559 CACCCTTCATAGAAAAATCT--CTGTTTTTGGCCTATGTTTAGAAGAGAGCTCTGATCCC 1616
||||| |||||||| ||||| |||||||||||||||| | | ||||||| |||||||||
Sbjct 1516 CACCCATCATAGAACAATCTATCTGTTTTTGGCCTATGCTCAAAAGAGAGTTCTGATCCC 1575
Query 1617 AAACTCATT 1625
|||||||||
Sbjct 1576 AAACTCATT 1584
> Ahg472021 jgi|Araly1|472021|fgenesh2_kg.1__1975__AT1G18040.1
Length=1616
Score = 1068 bits (578), Expect = 0.0
Identities = 1012/1216 (83%), Gaps = 52/1216 (4%)
Strand=Plus/Plus
Query 160 CCGGAGATGGAACAGCCGAAGAAAGTTGCTGATAGGTATCTAAAGCGAGAGGTTCTTGGT 219
||||||||||| ||||| ||||||||||||||||||||||| |||| |||||||||||||
Sbjct 180 CCGGAGATGGAGCAGCCAAAGAAAGTTGCTGATAGGTATCTCAAGCAAGAGGTTCTTGGT 239
Query 220 CAAGGTACTTATGGAGTCGTCTTCAAAGCTACTGATACAAAGAATGG-AGAAACTGTAGC 278
|||||||| ||||||||||||||||| || |||||||| ||| | || | ||||||||||
Sbjct 240 CAAGGTACCTATGGAGTCGTCTTCAAGGCCACTGATACTAAG-ACGGAACAAACTGTAGC 298
Query 279 GATCAAGAAAATAAGACTTGGTAAAGAGAA-AGAAGGTGTGAATGTAACAGCTCTTAGAG 337
|||||||| ||||| ||||||||| | || |||||||| ||| | |||||||| || |
Sbjct 299 AATCAAGAAGATAAGGCTTGGTAAACA-AAGGGAAGGTGTAAATATTACAGCTCTCAGGG 357
Query 338 AAATCAAATTACTTAAAGAGCTTAAGCATCCACATATAATTGAGTTGATTGATGCGTTTC 397
|||||||| | || ||||||||||||||||| ||||||||| | | |||||||| ||||
Sbjct 358 AAATCAAAATGCTCAAAGAGCTTAAGCATCCTCATATAATTCTGCTCATTGATGCATTTC 417
Query 398 CTCACAAGGAGAATTTGCA-CATCGTGTTTGAGTTCATGGAGACTGATCTCGAAGCAGTT 456
|||||||||| || ||||| | | || |||||||||||||||||||| |||||||| ||
Sbjct 418 CTCACAAGGAAAACTTGCATC-TTGTCTTTGAGTTCATGGAGACTGACCTCGAAGCTGTC 476
Query 457 ATCCGAGA-TCGTAATCTCTA-T-CTTTCGCCTGGTGATGTCAAATCTTACCTCCAAATG 513
|| || || || || | || | || || || | || ||||||||||||||| ||||
Sbjct 477 ATTCGCGATTC-CAA-C-ATATTCCTCTCACCCGCCGACATCAAATCTTACCTCCTAATG 533
Query 514 ATATTGAAAGGTCTTGAATATTGCCATGGCAAATGGGTTCTGCACAGAGATATGAAGCCA 573
| ||| ||||| |||| |||||||| | ||||||||| ||||||| ||||||||||||
Sbjct 534 ACATTTAAAGGACTTGCTTATTGCCACGATAAATGGGTTTTGCACAGGGATATGAAGCCA 593
Query 574 AACAACTTGTTGATAGGACCCAATGGACAGCTGAAACTTGCAGATTTTGGGTTAGCACGT 633
|| |||||||| |||||| ||||||||||||| |||||||||||||| |||||||||
Sbjct 594 AATAACTTGTTAATAGGAGTTGATGGACAGCTGAAGCTTGCAGATTTTGGCTTAGCACGT 653
Query 634 ATATTTGGTAG-CCCAGGTCGTAAGTTTACCCACCAGGTGTTTGCTAGATGGTATAGAGC 692
||||||||||| || | |||||| ||||||||||||||||||||||||||||| |||||
Sbjct 654 ATATTTGGTAGTCCTA-ATCGTAAATTTACCCACCAGGTGTTTGCTAGATGGTACAGAGC 712
Query 693 ACCTGAACTTTTGTTTGGTGCAAAACAATATGATGGTGCAGTTGATGTTTGGGCTGCTGG 752
||| |||||||||||||||||||||||||||| || |||||||||||| ||||| | |||
Sbjct 713 ACCAGAACTTTTGTTTGGTGCAAAACAATATGGTGCTGCAGTTGATGTGTGGGCCGTTGG 772
Query 753 CTGCATTTTTGCTGAACTTCTATTACGCAGACCATTTCTTCAGGGAAACAGTGATATTGA 812
|||||| || || ||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 773 CTGCATATTCGCCGAACTTCTACTGCGCAGACCATTTCTTCAGGGAAACAGTGATATTGA 832
Query 813 TCAATTAAGCAAAATCTTTGCTGCCTTTGGGACTCCAAAAGCAGATCAGTGGCCTGACAT 872
||||||||||||||| |||||||| |||||||| |||||||||||||||||||| || |
Sbjct 833 TCAATTAAGCAAAATATTTGCTGCTTTTGGGACACCAAAAGCAGATCAGTGGCCGGATGT 892
Query 873 GATCT--GCCTTCCTGATTATGTAGAGTATCAATTTGTCCCTGCTCCTTCTTTACGTTCT 930
| | || |||| |||||||||||||||||||||||| | || || ||| ||||||||
Sbjct 893 AA-CAAAGC-TTCCAGATTATGTAGAGTATCAATTTGTCGCGGCACCGTCTCTACGTTCT 950
Query 931 TTACTCCCAACGGTTAGTGAGGATGCTTTAGATTTGTTGTC-AAAGATGTTCACCTATGA 989
||| ||||| | |||||||| |||||| | || |||||||| ||| ||||| ||||||||
Sbjct 951 TTATTCCCAGCAGTTAGTGAAGATGCTCTCGACTTGTTGTCCAAA-ATGTTTACCTATGA 1009
Query 990 CCCCAAGTCTAGAATATCGATTCAGCAGGCTCTAAAACACAGGTACTTCACATCTGCACC 1049
||| ||| | ||||| || || ||||||||||| ||||||| |||||||| ||||||||
Sbjct 1010 CCCAAAGGCCAGAATTTCCATAAAGCAGGCTCTAGAACACAGATACTTCACTTCTGCACC 1069
Query 1050 TTCACCTACTGACCCTT-TAAAGCTCCCAA-GACCAGTTTCC-AAGCAAGATGCTAAGTC 1106
| | ||||||||||| ||| |||||||| | || ||| | ||||| |||| ||| ||
Sbjct 1070 TGCTCCTACTGACCCGGCTAA-GCTCCCAAAGCCC-GTT-CATAAGCAGGATGGTAAATC 1126
Query 1107 ATCTGATAGTAAACTTGAAGCCATTAAAGTGCTGTCACCAGCACATAAGTTTAGAAGAGT 1166
||| | |||||| ||||||||||| |||||| |||||| ||| |||||||||||||||
Sbjct 1127 CTCTTACGGTAAACATGAAGCCATTACAGTGCTATCACCACCACGTAAGTTTAGAAGAGT 1186
Query 1167 GATGCCTGACCGAGGAAAG-TCTGGTAATGGTTTCAAGGACCAGAGTGTTGATGTCATGA 1225
||||||||| || || | | | || || | ||| |||| | | |||| |||
Sbjct 1187 GATGCCTGAGCGTGGGAGGGT-TGATA--G-TTTAAAGG-C-----TC---ATGT--TGA 1231
Query 1226 GACAAGCTAGCCATGATGGACAAGCACCAATGTCTTTAGATTTCACCATCTTAGCTGAGC 1285
|||| | || | ||||||||| ||||| |||||||| |||||| | |||||||
Sbjct 1232 --CAAG---G--ATCA---ACAAGCACCCATGTCATTAGATTTTACCATCCTCGCTGAGC 1281
Query 1286 GGCCACCAAACCGACCAACCATCACCAGTGCAGATAGATCTCATCTGAAGAGGAAACTTG 1345
| || |||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 1282 GACCTCCAAACCGGCCAACAATCACCAGTGCTGATAGATCTCATCTGAAGAGGAAACTCG 1341
Query 1346 ATCTCGAGTTCCTATA 1361
|||| ||||||| |||
Sbjct 1342 ATCTTGAGTTCCAATA 1357
> Ahg943049 jgi|Araly1|943049|scaffold_603593.1
Length=416
Score = 183 bits (99), Expect = 3e-45
Identities = 120/130 (92%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 667 CAGGTGTTTGCTAGATGGTATAGAGCACCTGAACTTTTGTTTGGTGC-AAAACAATATGA 725
|||||||||||||||||||| |||||||| ||||||||||||||||| |||| ||||||
Sbjct 135 CAGGTGTTTGCTAGATGGTACAGAGCACCAGAACTTTTGTTTGGTGCTAAAA-AATATGG 193
Query 726 TGGTGCAGTTGATGTTTGGGCTGCTGGCTGCATTTTTGCTGAACTTCTATTACGCAGACC 785
|| |||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 194 TGCTGCAGTTGATGTTTGGGCTGCTGGCTGCATATTCGCTGAACTTCTGCTACGCAGACC 253
Query 786 ATTTCTTCAG 795
||||||||||
Sbjct 254 ATTTCTTCAG 263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60906301755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5