BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G73690.1 Length=1625 Score E Sequences producing significant alignments: (Bits) Value Ahg476509 jgi|Araly1|476509|fgenesh2_kg.2__1639__AT1G73690.1 2254 0.0 Ahg472021 jgi|Araly1|472021|fgenesh2_kg.1__1975__AT1G18040.1 1068 0.0 Ahg943049 jgi|Araly1|943049|scaffold_603593.1 183 3e-45 > Ahg476509 jgi|Araly1|476509|fgenesh2_kg.2__1639__AT1G73690.1 Length=1584 Score = 2254 bits (1220), Expect = 0.0 Identities = 1501/1629 (92%), Gaps = 49/1629 (3%) Strand=Plus/Plus Query 1 GTTTACTTTTCAATATTTTCCCCTAAAAATGTCGATTCCTTCTGTAATTGCTCTAACGGC 60 |||||||||||||||||||| ||| |||||||||||| |||||| |||||||||||||| Sbjct 1 GTTTACTTTTCAATATTTTCTCCT-CAAATGTCGATTCTTTCTGTGATTGCTCTAACGGC 59 Query 61 TAC-TTTTTCTCCAGAGCATCATAAGATACCTCAACGTTAACGATAACAAATTAATTAAG 119 ||| |||||| |||||| ||||||| |||||||||||||||||||| | |||| | Sbjct 60 TACTTTTTTCGCCAGAG---CATAAGAAACCTCAACGTTAACGATAAC--A--AATT--G 110 Query 120 ATCAGTTTCGATCAATTGCTTGTGATCCGATTAGAGAGTTCCGGAGATGGAACAGCCGAA 179 | || | | || | | || | |||| || ||||||||||||| ||||| || Sbjct 111 --C---TT-G-T-AA-T-C---TG----G-TTAGTGAATTCCGGAGATGGATCAGCCAAA 152 Query 180 GAAAGTTGCTGATAGGTATCTAAAGCGAGAGGTTCTTGGTCAAGGTACTTATGGAGTCGT 239 |||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct 153 AAAAGTTGCCGATAGGTATCTGAAGCGTGAGGTTCTTGGTCAAGGTACTTACGGAGTCGT 212 Query 240 CTTCAAAGCTACTGATACAAAGAATGGAGAAACTGTAGCGATCAAGAAAATAAGACTTGG 299 |||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 213 CTTCAAGGCTACTGATACTAAGAATGGAGAAACTGTAGCGATTAAGAAAATAAGACTTGG 272 Query 300 TAAAGAGAAAGAAGGTGTGAATGTAACAGCTCTTAGAGAAATCAAATTACTTAAAGAGCT 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 273 TAAAGAGAAAGAAGGTGTGAATGTAACAGCTCTTAGAGAAATCAAATTACTTAAAGAGCT 332 Query 360 TAAGCATCCACATATAATTGAGTTGATTGATGCGTTTCCTCACAAGGAGAATTTGCACAT 419 ||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| Sbjct 333 TAAGCATCCACATATAATTGAGTTGATTGATGCATTCCCTCACAAGGAGAACTTGCACAT 392 Query 420 CGTGTTTGAGTTCATGGAGACTGATCTCGAAGCAGTTATCCGAGATCGTAATCTCTATCT 479 ||||||||||||||||||||||||||||| || ||||| || |||| |||||| | ||| Sbjct 393 TGTGTTTGAGTTCATGGAGACTGATCTCGAGGCTGTTATTCGCGATCCTAATCTGTTTCT 452 Query 480 TTCGCCTGGTGATGTCAAATCTTACCTCCAAATGATATTGAAAGGTCTTGAATATTGCCA 539 |||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 453 TTCGCCCGCTGATGTCAAATCTTACCTCCAAATGATATTGAAAGGTCTTGAGTATTGCCA 512 Query 540 TGGCAAATGGGTTCTGCACAGAGATATGAAGCCAAACAACTTGTTGATAGGACCCAATGG 599 || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 513 TGACAAATGGGTTTTGCACAGAGATATGAAGCCAAACAACTTGTTGATAGGACCCAATGG 572 Query 600 ACAGCTGAAACTTGCAGATTTTGGGTTAGCACGTATATTTGGTAGCCCAGGTCGTAAGTT 659 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 573 ACAACTGAAACTTGCAGATTTTGGGTTAGCTCGTATATTTGGTAGCCCAGGTCGTAAGTT 632 Query 660 TACCCACCAGGTGTTTGCTAGATGGTATAGAGCACCTGAACTTTTGTTTGGTGCAAAACA 719 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 633 TACCCACCAGGTCTTTGCTAGATGGTATAGAGCACCTGAACTTTTGTTTGGTGCAAAACA 692 Query 720 ATATGATGGTGCAGTTGATGTTTGGGCTGCTGGCTGCATTTTTGCTGAACTTCTATTACG 779 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 693 ATATGGTGGTGCAGTTGATGTTTGGGCTGCTGGCTGCATTTTTGCTGAACTTCTATTACG 752 Query 780 CAGACCATTTCTTCAGGGAAACAGTGATATTGATCAATTAAGCAAAATCTTTGCTGCCTT 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 753 CAGACCATTTCTTCAGGGAAACAGTGATATTGATCAATTAAGCAAAATCTTTGCTGCCTT 812 Query 840 TGGGACTCCAAAAGCAGATCAGTGGCCTGACATGATCTGCCTTCCTGATTATGTAGAGTA 899 |||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 813 TGGGACCCCAAAAGCAGATCAGTGGCCCGATATGATCTGCCTTCCTGATTATGTAGAGTA 872 Query 900 TCAATTTGTCCCTGCTCCTTCTTTACGTTCTTTACTCCCAACGGTTAGTGAGGATGCTTT 959 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 873 TCAATTTGTCCCTGCGCCTTCTTTACGTTCTTTACTCCCAACGGTTAGTGAGGATGCATT 932 Query 960 AGATTTGTTGTCAAAGATGTTCACCTATGACCCCAAGTCTAGAATATCGATTCAGCAGGC 1019 ||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| Sbjct 933 AGATTTGTTGTCAAAGATGTTTACCTATGATCCCAAGTCTAGAATAACGATTCAGCAGGC 992 Query 1020 TCTAAAACACAGGTACTTCACATCTGCACCTTCACCTACTGACCCTTTAAAGCTCCCAAG 1079 |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 993 TCTACAACACAGGTACTTCACATCTGCACCTTCGCCTACTGACCCTTTAAAGCTCCCAAG 1052 Query 1080 ACCAGTTTC-CAAGCAAGATGCTAAGTCATCTGATAGTAAACTTGAAGCCATTAAAGTGC 1138 ||||||| | |||||| || |||||||||||||| ||||||| ||||| ||||||||| Sbjct 1053 ACCAGTT-CGCAAGCAGGACGCTAAGTCATCTGACAGTAAACACGAAGCTATTAAAGTGT 1111 Query 1139 TGTCACCAGCACATAAGTTTAGAAGAGTGATGCCTGACCGAGGAAAGTCTGGTAATGGTT 1198 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 1112 TGTCACCAGCACATAAGCTTAGAAGAGTGATGCCTGACCGAGGAAAGTCTGCTAATGGTT 1171 Query 1199 TCAAGGACCAGAGTGTTGATGTCATGAGACAAGCTAGCCATGATGGACAAGCACCAATGT 1258 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1172 TCAAGGACCAGAGTGTTGATGTCATGAGACAAGCTAGCCATGATGGACAAGCACCGATGT 1231 Query 1259 CTTTAGATTTCACCATCTTAGCTGAGCGGCCACCAAACCGACCAACCATCACCAGTGCAG 1318 ||||||||||||||||| |||| |||||||| || ||||||||||||||||||||||| | Sbjct 1232 CTTTAGATTTCACCATCCTAGCCGAGCGGCCTCCTAACCGACCAACCATCACCAGTGCGG 1291 Query 1319 ATAGATCTCATCTGAAGAGGAAACTTGATCTCGAGTTCCTATAGGATATCGCGTAACAGG 1378 ||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||| Sbjct 1292 ATAGATCTCATCTGAAGAGGAAACTCGATCTCGAGTTCCTATAGGATATAGCTTAACAGG 1351 Query 1379 CTTCTTCTTGACGTCGTTCTTCAGGTTCCTATAGCCTATAGGATCTCTCTTACTGGTTGG 1438 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1352 CTTCTTCTTGACGTCGTTCTTCAG-TTCCTATAGCCTATAGGATCTCTCTTACTGGTTGG 1410 Query 1439 TTCCGTTCAGTAATTCCTGAAATTTTTCATATCACAACTAGTGATGACGAATAGTTTGAA 1498 |||| | | |||| || | ||||| |||||||||||||||||||||| |||| Sbjct 1411 TTCC-TG-A--AATT--TG---T----CATATTACAACTAGTGATGACGAATAGTGTGAA 1457 Query 1499 TCATTCTTTCTGTCTAAAATAAAGAATATAAAGCACAGATGATTAACTAATCATCATGTA 1558 ||||||||||||| | |||||| | ||||||| |||||||||||||||||||||||||| Sbjct 1458 TCATTCTTTCTGTTTTCAATAAA-A-TATAAAGTACAGATGATTAACTAATCATCATGTA 1515 Query 1559 CACCCTTCATAGAAAAATCT--CTGTTTTTGGCCTATGTTTAGAAGAGAGCTCTGATCCC 1616 ||||| |||||||| ||||| |||||||||||||||| | | ||||||| ||||||||| Sbjct 1516 CACCCATCATAGAACAATCTATCTGTTTTTGGCCTATGCTCAAAAGAGAGTTCTGATCCC 1575 Query 1617 AAACTCATT 1625 ||||||||| Sbjct 1576 AAACTCATT 1584 > Ahg472021 jgi|Araly1|472021|fgenesh2_kg.1__1975__AT1G18040.1 Length=1616 Score = 1068 bits (578), Expect = 0.0 Identities = 1012/1216 (83%), Gaps = 52/1216 (4%) Strand=Plus/Plus Query 160 CCGGAGATGGAACAGCCGAAGAAAGTTGCTGATAGGTATCTAAAGCGAGAGGTTCTTGGT 219 ||||||||||| ||||| ||||||||||||||||||||||| |||| ||||||||||||| Sbjct 180 CCGGAGATGGAGCAGCCAAAGAAAGTTGCTGATAGGTATCTCAAGCAAGAGGTTCTTGGT 239 Query 220 CAAGGTACTTATGGAGTCGTCTTCAAAGCTACTGATACAAAGAATGG-AGAAACTGTAGC 278 |||||||| ||||||||||||||||| || |||||||| ||| | || | |||||||||| Sbjct 240 CAAGGTACCTATGGAGTCGTCTTCAAGGCCACTGATACTAAG-ACGGAACAAACTGTAGC 298 Query 279 GATCAAGAAAATAAGACTTGGTAAAGAGAA-AGAAGGTGTGAATGTAACAGCTCTTAGAG 337 |||||||| ||||| ||||||||| | || |||||||| ||| | |||||||| || | Sbjct 299 AATCAAGAAGATAAGGCTTGGTAAACA-AAGGGAAGGTGTAAATATTACAGCTCTCAGGG 357 Query 338 AAATCAAATTACTTAAAGAGCTTAAGCATCCACATATAATTGAGTTGATTGATGCGTTTC 397 |||||||| | || ||||||||||||||||| ||||||||| | | |||||||| |||| Sbjct 358 AAATCAAAATGCTCAAAGAGCTTAAGCATCCTCATATAATTCTGCTCATTGATGCATTTC 417 Query 398 CTCACAAGGAGAATTTGCA-CATCGTGTTTGAGTTCATGGAGACTGATCTCGAAGCAGTT 456 |||||||||| || ||||| | | || |||||||||||||||||||| |||||||| || Sbjct 418 CTCACAAGGAAAACTTGCATC-TTGTCTTTGAGTTCATGGAGACTGACCTCGAAGCTGTC 476 Query 457 ATCCGAGA-TCGTAATCTCTA-T-CTTTCGCCTGGTGATGTCAAATCTTACCTCCAAATG 513 || || || || || | || | || || || | || ||||||||||||||| |||| Sbjct 477 ATTCGCGATTC-CAA-C-ATATTCCTCTCACCCGCCGACATCAAATCTTACCTCCTAATG 533 Query 514 ATATTGAAAGGTCTTGAATATTGCCATGGCAAATGGGTTCTGCACAGAGATATGAAGCCA 573 | ||| ||||| |||| |||||||| | ||||||||| ||||||| |||||||||||| Sbjct 534 ACATTTAAAGGACTTGCTTATTGCCACGATAAATGGGTTTTGCACAGGGATATGAAGCCA 593 Query 574 AACAACTTGTTGATAGGACCCAATGGACAGCTGAAACTTGCAGATTTTGGGTTAGCACGT 633 || |||||||| |||||| ||||||||||||| |||||||||||||| ||||||||| Sbjct 594 AATAACTTGTTAATAGGAGTTGATGGACAGCTGAAGCTTGCAGATTTTGGCTTAGCACGT 653 Query 634 ATATTTGGTAG-CCCAGGTCGTAAGTTTACCCACCAGGTGTTTGCTAGATGGTATAGAGC 692 ||||||||||| || | |||||| ||||||||||||||||||||||||||||| ||||| Sbjct 654 ATATTTGGTAGTCCTA-ATCGTAAATTTACCCACCAGGTGTTTGCTAGATGGTACAGAGC 712 Query 693 ACCTGAACTTTTGTTTGGTGCAAAACAATATGATGGTGCAGTTGATGTTTGGGCTGCTGG 752 ||| |||||||||||||||||||||||||||| || |||||||||||| ||||| | ||| Sbjct 713 ACCAGAACTTTTGTTTGGTGCAAAACAATATGGTGCTGCAGTTGATGTGTGGGCCGTTGG 772 Query 753 CTGCATTTTTGCTGAACTTCTATTACGCAGACCATTTCTTCAGGGAAACAGTGATATTGA 812 |||||| || || ||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 773 CTGCATATTCGCCGAACTTCTACTGCGCAGACCATTTCTTCAGGGAAACAGTGATATTGA 832 Query 813 TCAATTAAGCAAAATCTTTGCTGCCTTTGGGACTCCAAAAGCAGATCAGTGGCCTGACAT 872 ||||||||||||||| |||||||| |||||||| |||||||||||||||||||| || | Sbjct 833 TCAATTAAGCAAAATATTTGCTGCTTTTGGGACACCAAAAGCAGATCAGTGGCCGGATGT 892 Query 873 GATCT--GCCTTCCTGATTATGTAGAGTATCAATTTGTCCCTGCTCCTTCTTTACGTTCT 930 | | || |||| |||||||||||||||||||||||| | || || ||| |||||||| Sbjct 893 AA-CAAAGC-TTCCAGATTATGTAGAGTATCAATTTGTCGCGGCACCGTCTCTACGTTCT 950 Query 931 TTACTCCCAACGGTTAGTGAGGATGCTTTAGATTTGTTGTC-AAAGATGTTCACCTATGA 989 ||| ||||| | |||||||| |||||| | || |||||||| ||| ||||| |||||||| Sbjct 951 TTATTCCCAGCAGTTAGTGAAGATGCTCTCGACTTGTTGTCCAAA-ATGTTTACCTATGA 1009 Query 990 CCCCAAGTCTAGAATATCGATTCAGCAGGCTCTAAAACACAGGTACTTCACATCTGCACC 1049 ||| ||| | ||||| || || ||||||||||| ||||||| |||||||| |||||||| Sbjct 1010 CCCAAAGGCCAGAATTTCCATAAAGCAGGCTCTAGAACACAGATACTTCACTTCTGCACC 1069 Query 1050 TTCACCTACTGACCCTT-TAAAGCTCCCAA-GACCAGTTTCC-AAGCAAGATGCTAAGTC 1106 | | ||||||||||| ||| |||||||| | || ||| | ||||| |||| ||| || Sbjct 1070 TGCTCCTACTGACCCGGCTAA-GCTCCCAAAGCCC-GTT-CATAAGCAGGATGGTAAATC 1126 Query 1107 ATCTGATAGTAAACTTGAAGCCATTAAAGTGCTGTCACCAGCACATAAGTTTAGAAGAGT 1166 ||| | |||||| ||||||||||| |||||| |||||| ||| ||||||||||||||| Sbjct 1127 CTCTTACGGTAAACATGAAGCCATTACAGTGCTATCACCACCACGTAAGTTTAGAAGAGT 1186 Query 1167 GATGCCTGACCGAGGAAAG-TCTGGTAATGGTTTCAAGGACCAGAGTGTTGATGTCATGA 1225 ||||||||| || || | | | || || | ||| |||| | | |||| ||| Sbjct 1187 GATGCCTGAGCGTGGGAGGGT-TGATA--G-TTTAAAGG-C-----TC---ATGT--TGA 1231 Query 1226 GACAAGCTAGCCATGATGGACAAGCACCAATGTCTTTAGATTTCACCATCTTAGCTGAGC 1285 |||| | || | ||||||||| ||||| |||||||| |||||| | ||||||| Sbjct 1232 --CAAG---G--ATCA---ACAAGCACCCATGTCATTAGATTTTACCATCCTCGCTGAGC 1281 Query 1286 GGCCACCAAACCGACCAACCATCACCAGTGCAGATAGATCTCATCTGAAGAGGAAACTTG 1345 | || |||||||| ||||| ||||||||||| |||||||||||||||||||||||||| | Sbjct 1282 GACCTCCAAACCGGCCAACAATCACCAGTGCTGATAGATCTCATCTGAAGAGGAAACTCG 1341 Query 1346 ATCTCGAGTTCCTATA 1361 |||| ||||||| ||| Sbjct 1342 ATCTTGAGTTCCAATA 1357 > Ahg943049 jgi|Araly1|943049|scaffold_603593.1 Length=416 Score = 183 bits (99), Expect = 3e-45 Identities = 120/130 (92%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 667 CAGGTGTTTGCTAGATGGTATAGAGCACCTGAACTTTTGTTTGGTGC-AAAACAATATGA 725 |||||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||| Sbjct 135 CAGGTGTTTGCTAGATGGTACAGAGCACCAGAACTTTTGTTTGGTGCTAAAA-AATATGG 193 Query 726 TGGTGCAGTTGATGTTTGGGCTGCTGGCTGCATTTTTGCTGAACTTCTATTACGCAGACC 785 || |||||||||||||||||||||||||||||| || ||||||||||| |||||||||| Sbjct 194 TGCTGCAGTTGATGTTTGGGCTGCTGGCTGCATATTCGCTGAACTTCTGCTACGCAGACC 253 Query 786 ATTTCTTCAG 795 |||||||||| Sbjct 254 ATTTCTTCAG 263 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60906301755 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5